HG10003008 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10003008
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	Chr11: 16314686 .. 16317249 (-)
RNA-Seq Expression	HG10003008
Synteny	HG10003008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGCTGGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCGCCATTTCCCCTCTCTCCCTCAATCCATCGCGAAATCGCGGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCGGAGCAAAATCAGGATGTGAATCAGAAGAAAAAGCTATACATCTTCAATTTACCTTGGTCTTTCTCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTATCACTGATGTTGAGGTTATTCTTCTTCTTCTTCTTTTGTTCATTCTTGTTTTGTGGTAATAATGTTTATGTAATCTGATGGATTTGTGTTGGATTGTGTGTTTGTACTTAAAATAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCTGAAATTTGACTCTCAAGTAGGTTTTCTTCAATCTTCTTCTGCTCACTTTCTGTTTGCTTATTTGCCCAAATGAATTCTTAATTCTTTTTTTCTTACTGGTATTCTACCAATTACTTGTTTGGTTTGGTTCTGAAATTGTGCATTTCAATTTCAATATGACTTTTGGTATATATATAAAACTACTTTGAGAATCCTCAAGATTTTTTTTTTTTTTTTTTTAGATATTTGTAAGTTTCCGGATGGAATTGAAGTCACTAGGGTTTGAACTCATTTCTTTTGTTTCAATGTCACTAAACTAACTTAAAGGTGGTTCAAAAGGTCTTTTTATCCTATTGTTTAATTAATAAAAAAAACAAATTTCCTCTTCTAGGGTTAGTGATAAAAAATGTTACGAATAGCCTAAATTTAGTTGCGCTGATGTCAAATGATTTGAATTCTAAAAACAATGAAAACTAATCTTTTCCTTGTACCACAAAGCACCGGTCAACGTTAAAATGCTCATTCGTGATTGCATGTCTTGTTCATTACGAATTGATGAGATCTTAAACATGAATTCACGTTTGAGAAAAGTCATAAAATCGCAAAATTTTAATAACGGACAAGTAGTTGTATTATTATAAAAATTGCAATGCACCTTGAAATTACGTAGTCTCATTAATTCATGATTGGTGCAAACCCGCAGTTGCAAATGGGCTCTAAAGAGAATTTAATGTTGGTTGGTGTTTTATGACCCAAGCAAAAGGTTAATTTCCATTCTTGTCAAAGTCGGGGTCATTTGACATTAGTGCAACTAAATTTAGATCATCCCTATAAAAAGAACTCTTTAGTGATATACAAATGTCATAGGGTTAAATAGTTGTCCCTTAGAATTAATTCAACTAGATATAGTCTTGCTAAAAGACTCATATAGTTACTTCTTGAAAAAAAAGAAGTTTATAGTTCAAATACAAGTGATTCCTCTCTCTTAAAGACGATTTAGTTATATCTACTCTTGAGGTCAGAGCTATAATCCATTTATCAGACATTAAATATTTAAAAAGATATCTCTATTCTCATTGTTATGTAGTGTCAGATTACATTCAAACTTGTGGCACTGAGGAAGTTAAAACAAGTCCTAAAAACTAAGGCTATCATTGACATACATTTCAGTCATTTTGCTTTACATTGGTTCTAAACATACATCGCATACATAACTACTGCCTATTATAAGTACAACAGACATTATCTACGTTCTGTTCATGGTAAATATATCATGTTAATATGTTCCATGAAAACATATATTTCTGCAGGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAGGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCTGGTCCCCCTCCTGGAGAGACGGTGAATAAACTTTATGTATCAAATCTTGCTTGGAAGGTGAGATCCAGCAATCTCAGAGAGTTCTTCTCTGAGAACTTTAACCCAGTTGCAGCCAGGGTTGTCTTTGATAGCCCTTCTGGAAGATCTGCTGGATACGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTGAAACTGCACTTTCTTCATTGGAGGGGAAGGTAATTTCCTTCCCGAGATCCTGTTGATTGATGAAGTATTGTGTAACCAAGAATCTATTTGGAATCACTTTCCAAATGCTTAAAAACAACTTTTTAAGTACTTGAAAAGTTATTCCAAGCAGAGTCCCTGAGTGTTAGTAACACAAATTATTCATGGTTTGAAATTGAATCAACATTCACGAAAAGGGAAAACTTGAACTAATGCTTGTTTTTAAGTATCATTTGTTCAAAACCTGAAAAATAACTCAGTACCATGTTACATTTTAACCCTTAATGCAAGTGGAATGTTCTATTATGTTCCTTCCTTACATATATGCTTTACTCTCTCCCTCCACAGGAATTGATGGGAAGACCGCTTCGCCTGAAATTCAGTGAAAGAAATGTCAGCGAATCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG

mRNA sequence

ATGGCGACGCTGGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCGCCATTTCCCCTCTCTCCCTCAATCCATCGCGAAATCGCGGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCGGAGCAAAATCAGGATGTGAATCAGAAGAAAAAGCTATACATCTTCAATTTACCTTGGTCTTTCTCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTATCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCTGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAGGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCTGGTCCCCCTCCTGGAGAGACGGTGAATAAACTTTATGTATCAAATCTTGCTTGGAAGGTGAGATCCAGCAATCTCAGAGAGTTCTTCTCTGAGAACTTTAACCCAGTTGCAGCCAGGGTTGTCTTTGATAGCCCTTCTGGAAGATCTGCTGGATACGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTGAAACTGCACTTTCTTCATTGGAGGGGAAGGAATTGATGGGAAGACCGCTTCGCCTGAAATTCAGTGAAAGAAATGTCAGCGAATCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG

Coding sequence (CDS)

ATGGCGACGCTGGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCGCCATTTCCCCTCTCTCCCTCAATCCATCGCGAAATCGCGGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCGGAGCAAAATCAGGATGTGAATCAGAAGAAAAAGCTATACATCTTCAATTTACCTTGGTCTTTCTCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTATCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCTGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAGGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCTGGTCCCCCTCCTGGAGAGACGGTGAATAAACTTTATGTATCAAATCTTGCTTGGAAGGTGAGATCCAGCAATCTCAGAGAGTTCTTCTCTGAGAACTTTAACCCAGTTGCAGCCAGGGTTGTCTTTGATAGCCCTTCTGGAAGATCTGCTGGATACGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTGAAACTGCACTTTCTTCATTGGAGGGGAAGGAATTGATGGGAAGACCGCTTCGCCTGAAATTCAGTGAAAGAAATGTCAGCGAATCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG

Protein sequence

MATLESAIPIISQYISSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSRNRGGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES

Homology

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BLAST of HG10003008 vs. NCBI nr
Match: XP_038904114.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 505.4 bits (1300), Expect = 3.3e-139
Identity = 269/286 (94.06%), Postives = 274/286 (95.80%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSRN 60
           MATLESAIPIISQYISSSSSKL  NKLPSAIKLRISFSSPL  LNPTTAISPLSL+ SRN
Sbjct: 1   MATLESAIPIISQYISSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSRN 60

Query: 61  RGGG---RLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTITD 120
            GGG   RLCSAVQEVSLEEASEQN+DVNQKKKLYIFNLPWSFSVVDIKELFGQCGT+TD
Sbjct: 61  HGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTD 120

Query: 121 VEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKPPG 180
           VEIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+RLKKPPPPKPPG
Sbjct: 121 VEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPG 180

Query: 181 PPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATRE 240
           PPP ETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATRE
Sbjct: 181 PPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATRE 240

Query: 241 EAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           EAETALSSLEGKELMGRPLRLKFSERNV+ESETPKED VESQPEES
Sbjct: 241 EAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 286

[Close]

BLAST of HG10003008 vs. NCBI nr
Match: KAG6577717.1 (hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015754.1 hypothetical protein SDJN02_23392 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 499.2 bits (1284), Expect = 2.3e-137
Identity = 263/287 (91.64%), Postives = 274/287 (95.47%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSL---NP 60
           MATLESAIPIISQYISSSSSKL F+KLPSAIKLRISFSSPLLSLNPTTA+SPL L   NP
Sbjct: 1   MATLESAIPIISQYISSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNP 60

Query: 61  SRNR-GGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTIT 120
           SRNR GGGR CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVDIKE FGQCGT+T
Sbjct: 61  SRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGTVT 120

Query: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKPP 180
           DVEIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+RLKKPPPPKPP
Sbjct: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP 180

Query: 181 GPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 240
           GPPPGETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYGFVSFATR
Sbjct: 181 GPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFATR 240

Query: 241 EEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           EEAETALSSLEGKELMGRPLRLKFSER V +SETPKED VESQPEES
Sbjct: 241 EEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287

[Close]

BLAST of HG10003008 vs. NCBI nr
Match: XP_008448669.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 495.4 bits (1274), Expect = 3.4e-136
Identity = 259/285 (90.88%), Postives = 273/285 (95.79%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSR 60
           MATLESA+PIIS Y+ SSSSSKLCFNKLPSAIKLRISFSSPLLSLNP T ISP+S N SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  N-RGGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTITDV 120
           N  GGGRLCSAVQEVSLEEASE+ QDVNQKKKLYIFNLPWS SVVDIKELFGQCGT++DV
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKPPGP 180
           EIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+R K+PPPPKPPGP
Sbjct: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           A+TALSSLEGKELMGRPLRLKFSER+V+ESETPKEDIVESQPEES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of HG10003008 vs. NCBI nr
Match: XP_011650340.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus] >KGN55743.1 hypothetical protein Csa_011017 [Cucumis sativus])

HSP 1 Score: 494.2 bits (1271), Expect = 7.5e-136
Identity = 257/288 (89.24%), Postives = 273/288 (94.79%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSS----SKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLN 60
           M T+ES +PIIS YISSSS    SKLCFNKLPS IKLRISFSSPLLSLNPTT ISP S N
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  PSRNRGGG-RLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTI 120
            SRNRGGG RLCSA+QEV+LEEASE+NQDVNQK+KLYIFNLPWS SVVDIKELFGQCGT+
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+RLKKPPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLR+FFSENFNP+AARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           REEA+TALSSLEGKELMGRPLRLKFSERNV+E+ETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of HG10003008 vs. NCBI nr
Match: XP_023007582.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-134
Identity = 262/294 (89.12%), Postives = 274/294 (93.20%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-------SSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPL 60
           MATLESAIPIISQYI       SSSSSKL F+KLPSAIKLRISFSSPLLSLNPTTA+SPL
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  SL---NPSRNRGGG-RLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELF 120
            L   NP RNRGGG R CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTITDVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKK 180
           GQCGT+TDVEIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+RLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYG 240
           PPPPKPPGPPPGETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           FVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETPKED VESQPEES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of HG10003008 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-31
Identity = 84/233 (36.05%), Postives = 131/233 (56.22%), Query Frame = 0


Query: 68  SAVQEVSLEEASEQNQDVN-QKKKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQK-N 127
           SA +E  +EE  E+ +  + +  +LY+ NLP+S +   + E+F + GT+ +VEI+  +  
Sbjct: 92  SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVT 151

Query: 128 GRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKPPGPPPGE--- 187
            RSRGFAFVTM S +EA+ AI  FD  ++ GR +KV F           P  P  GE   
Sbjct: 152 DRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNF-----------PEVPRGGEREV 211

Query: 188 --------------TVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGY 247
                         + +KLYV+NL+W + S  LR+ F++    ++A+V++D  SGRS G+
Sbjct: 212 MSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGF 271

Query: 248 GFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPE 282
           GF++F++ E   +AL ++   EL GRPLRL  + +    S  P   +VE+ PE
Sbjct: 272 GFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPP---VVETSPE 310

[Close]

BLAST of HG10003008 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.0e-28
Identity = 96/326 (29.45%), Postives = 156/326 (47.85%), Query Frame = 0


Query: 2   ATLESAIPIISQYISSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSRNR 61
           AT  SA        S S+S+L +   P + KL  +  +PL+          L  N  R+R
Sbjct: 16  ATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLI----------LHSNIRRHR 75

Query: 62  GGGRLCSAVQEVSL----------------EEASEQNQDVNQKK----------KLYIFN 121
                C+A  E S                 EE  E  ++V ++K          +LY+ N
Sbjct: 76  ---FFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGN 135

Query: 122 LPWSFSVVDIKELFGQCGTITDVEIIKQK-NGRSRGFAFVTMASPDEAQAAILKFDSQEI 181
           LP++ +  ++ ++FG+ GT+ DV+I+  K   RSRGF FVTM S +EA+ A+  F+S +I
Sbjct: 136 LPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 195

Query: 182 SGRVIKVEFARRLKKPPPPKPPGPPPGE-----------------TVNKLYVSNLAWKVR 241
            GR +KV F           P  P  GE                 + +K+Y  NL W + 
Sbjct: 196 GGRTVKVNF-----------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLT 255

Query: 242 SSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLR 284
           S  L++ F +    + A+V+++  +GRS G+GF+SF + E  ++AL+++ G E+ GR LR
Sbjct: 256 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 315

[Close]

BLAST of HG10003008 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 68/193 (35.23%), Postives = 117/193 (60.62%), Query Frame = 0


Query: 72  EVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQKN-GRSRG 131
           EV  +E  E+ Q+  +  KL++ NLP+      +  LF Q G +   E+I  ++  +SRG
Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178

Query: 132 FAFVTMASPDEAQAAILKFDSQEISGRVIKV-EFARRLKKPPPPKPPGPPPGETVNKLYV 191
           F FVTM++ +EA+ A+  ++  +++GR++ V + ARR ++P  P    P   E   ++YV
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERP----PRTFEQSYRIYV 238

Query: 192 SNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGK 251
            N+ W +  + L + FSE+   V+ARVV+D  +GRS G+GFV+ A+  E   A+++L+G+
Sbjct: 239 GNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQ 298

Query: 252 ELMGRPLRLKFSE 263
            L GR +R+  +E
Sbjct: 299 SLDGRTIRVNVAE 307

[Close]

BLAST of HG10003008 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27
Identity = 85/257 (33.07%), Postives = 134/257 (52.14%), Query Frame = 0


Query: 16  SSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSRNRGGGRLCSAVQEVSL 75
           S ++S   F+  PS++ L +S SS   S      ++    +   +   G           
Sbjct: 25  SQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIEDVEDG----------- 84

Query: 76  EEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQK-NGRSRGFAFV 135
           ++  E+ ++ +   K+++ NLP+S     + ELF + G +  VE+I  K  GRSRGF FV
Sbjct: 85  DDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 144

Query: 136 TMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPK---------PPGPPPGETVN 195
           TM+S +E +AA  +F+  E+ GR ++V        PPP K           G    ++ N
Sbjct: 145 TMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRGGSRGGGSFDSSN 204

Query: 196 KLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSS 255
           ++YV NLAW V    L   FSE    V A+VV+D  SGRS G+GFV++++ EE   A+ S
Sbjct: 205 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 264

Query: 256 LEGKELMGRPLRLKFSE 263
           L+G +L GR +R+  +E
Sbjct: 265 LDGVDLNGRAIRVSPAE 265

[Close]

BLAST of HG10003008 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-26
Identity = 85/259 (32.82%), Postives = 124/259 (47.88%), Query Frame = 0


Query: 35  ISFSSPLLSLNPTTAISPLSLNPSRNRGGGRLCSAV---QEVSLEE------ASEQNQDV 94
           +S  SP LS    +     S+    N    R    V    E  +EE      A  + Q  
Sbjct: 28  VSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFARNVAITSEFEVEEDGFADVAPPKEQSF 87

Query: 95  NQKKKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQK-NGRSRGFAFVTMASPDEAQA 154
           +   KL++ NLP++     + +LF   G +  VE+I  K  GRSRGF FVTM+S  E +A
Sbjct: 88  SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147

Query: 155 AILKFDSQEISGRVIKVEFARRLKKPPPPKPP---------------------GPPPGET 214
           A  +F+  E+ GR ++V        PPPPK                       G     +
Sbjct: 148 AAQQFNGYELDGRPLRVNAG-----PPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGS 207

Query: 215 VNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETAL 263
            N++YV NL+W V    L   FSE    V ARV++D  SGRS G+GFV++ + +E + A+
Sbjct: 208 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 267

[Close]

BLAST of HG10003008 vs. ExPASy TrEMBL
Match: A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 259/285 (90.88%), Postives = 273/285 (95.79%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSR 60
           MATLESA+PIIS Y+ SSSSSKLCFNKLPSAIKLRISFSSPLLSLNP T ISP+S N SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  N-RGGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTITDV 120
           N  GGGRLCSAVQEVSLEEASE+ QDVNQKKKLYIFNLPWS SVVDIKELFGQCGT++DV
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKPPGP 180
           EIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+R K+PPPPKPPGP
Sbjct: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           A+TALSSLEGKELMGRPLRLKFSER+V+ESETPKEDIVESQPEES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of HG10003008 vs. ExPASy TrEMBL
Match: A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.6e-136
Identity = 257/288 (89.24%), Postives = 273/288 (94.79%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSS----SKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLN 60
           M T+ES +PIIS YISSSS    SKLCFNKLPS IKLRISFSSPLLSLNPTT ISP S N
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  PSRNRGGG-RLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTI 120
            SRNRGGG RLCSA+QEV+LEEASE+NQDVNQK+KLYIFNLPWS SVVDIKELFGQCGT+
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+RLKKPPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLR+FFSENFNP+AARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           REEA+TALSSLEGKELMGRPLRLKFSERNV+E+ETPKEDIVESQPEES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of HG10003008 vs. ExPASy TrEMBL
Match: A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.2e-135
Identity = 262/294 (89.12%), Postives = 274/294 (93.20%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-------SSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPL 60
           MATLESAIPIISQYI       SSSSSKL F+KLPSAIKLRISFSSPLLSLNPTTA+SPL
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  SL---NPSRNRGGG-RLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELF 120
            L   NP RNRGGG R CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTITDVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKK 180
           GQCGT+TDVEIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+RLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYG 240
           PPPPKPPGPPPGETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           FVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETPKED VESQPEES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of HG10003008 vs. ExPASy TrEMBL
Match: A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 2.0e-134
Identity = 260/288 (90.28%), Postives = 270/288 (93.75%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSL---N 60
           MATLESAIPIISQYI SSSSSKL    LPSAIKLRISFSSPLLS NPTTA+SPL L   N
Sbjct: 1   MATLESAIPIISQYISSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLFLTN 60

Query: 61  PSRNR-GGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTI 120
           PSRNR GGGR CSAVQEVSLEEASE+NQDVNQK+KLYIFNLPWSFSVVDIKE FGQCGT+
Sbjct: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKP 180
           TDVEIIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+RLKKPPPPKP
Sbjct: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYGFVSFAT
Sbjct: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           REEAETALSSLEGKELMGRPLRLKFSER V +SETPKED VESQPEES
Sbjct: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of HG10003008 vs. ExPASy TrEMBL
Match: A0A5A7UAR3 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001500 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 5.8e-134
Identity = 257/285 (90.18%), Postives = 271/285 (95.09%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSR 60
           MATLESA+PIIS Y+ SSSSSKLCFNKLPSAIKLRISFSSPLLSLNP T ISP+S N SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  N-RGGGRLCSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTITDV 120
           N  GGGRLCSAVQEVSLEEASE+ QDVNQKKKLYIFNLPWS SVVDIKELFGQCGT++D 
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSD- 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLKKPPPPKPPGP 180
            IIKQKNGRSRGFAFVTMASPDEAQAAI KFDSQEISGRVIKVEFA+R K+PPPPKPPGP
Sbjct: 121 -IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AETALSSLEGKELMGRPLRLKFSERNVSESETPKEDIVESQPEES 284
           A+TALSSLEGKELMGRPLRLKFSER+V+ESETPKEDIVESQPEES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of HG10003008 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 276.9 bits (707), Expect = 1.8e-74
Identity = 161/285 (56.49%), Postives = 202/285 (70.88%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSK-LCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSR 60
           MA LE+++ I S   SSSSSK   F+K  S++KL        LSL   + +SP+    S 
Sbjct: 1   MAVLEASLSIFSFSSSSSSSKPYLFSKRSSSLKL------TALSLRIPSNLSPVFSLRSG 60

Query: 61  NRGGGRL-----------CSAVQEVSLEEASEQNQDVNQKKKLYIFNLPWSFSVVDIKEL 120
           +    RL            SA +E S EE +E+ Q+ N K+KL++FNLPWS SV DI EL
Sbjct: 61  SDNSRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISEL 120

Query: 121 FGQCGTITDVEIIKQKNGRSRGFAFVTMASPDEAQAAILKFDSQEISGRVIKVEFARRLK 180
           FGQCGT+ +VEII+QK+G++RGFAFVTMAS +EAQAAI KFD+ ++SGR+I V FARR K
Sbjct: 121 FGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFK 180

Query: 181 KPPPPKP---PGPPPGETVNKLYVSNLAWKVRSSNLREFF-SENFNPVAARVVFDSPSGR 240
           KP P  P   P P PG+T +KLYVSNLAWK RS++LRE F + +FNPV+ARVVF  P GR
Sbjct: 181 KPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGR 240

Query: 241 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVSESE 270
           S+GYGFVSFATREEAE A++ L GKE+MGRP+ LKFS R+ SESE
Sbjct: 241 SSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESE 279

[Close]

BLAST of HG10003008 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-33
Identity = 91/260 (35.00%), Postives = 142/260 (54.62%), Query Frame = 0


Query: 35  ISFSSPLLSLNPTTAISPLSLNPSRNRGGGRLCSAVQEVSLEEASEQN------QDVNQK 94
           +S S+P L      A  P S+            +  QE  LE +S  +      ++   K
Sbjct: 34  LSLSTPSLCRLHRHATFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISK 93

Query: 95  KKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQKNGRSRGFAFVTMASPDEAQAAILK 154
            +L   N+PW+ +  DI+ LF + G++ D+E+   K  R+RG  F+ MASP+EA  A+  
Sbjct: 94  TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKS 153

Query: 155 FDSQEISGRVIKVEFARRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFF-SE 214
            +S E  GR +KV++A+  KK        P P  T N L+V+NLA++ R+ +L+EFF ++
Sbjct: 154 LESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDAD 213

Query: 215 NFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRL----KFSER 274
             N V+  V+F     RS+GYGFVSF T+++AE AL   +GK+ +GRP+RL    +F + 
Sbjct: 214 TGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKL 273

Query: 275 NVSESETPKEDIVESQPEES 284
              E   P E+  E +P +S
Sbjct: 274 QAKEGLQPPEEEAEEEPSQS 292

[Close]

BLAST of HG10003008 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-33
Identity = 79/201 (39.30%), Postives = 122/201 (60.70%), Query Frame = 0


Query: 88  KKKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQKNGRSRGFAFVTMASPDEAQAAIL 147
           K +L   N+PW+ +  DI+ LF + G++ D+E+   K  R+RG  F+ MASP+EA  A+ 
Sbjct: 33  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92

Query: 148 KFDSQEISGRVIKVEFARRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFF-S 207
             +S E  GR +KV++A+  KK        P P  T N L+V+NLA++ R+ +L+EFF +
Sbjct: 93  SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 152

Query: 208 ENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRL----KFSE 267
           +  N V+  V+F     RS+GYGFVSF T+++AE AL   +GK+ +GRP+RL    +F +
Sbjct: 153 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 212

Query: 268 RNVSESETPKEDIVESQPEES 284
               E   P E+  E +P +S
Sbjct: 213 LQAKEGLQPPEEEAEEEPSQS 232

[Close]

BLAST of HG10003008 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-29
Identity = 96/326 (29.45%), Postives = 156/326 (47.85%), Query Frame = 0


Query: 2   ATLESAIPIISQYISSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTAISPLSLNPSRNR 61
           AT  SA        S S+S+L +   P + KL  +  +PL+          L  N  R+R
Sbjct: 16  ATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLI----------LHSNIRRHR 75

Query: 62  GGGRLCSAVQEVSL----------------EEASEQNQDVNQKK----------KLYIFN 121
                C+A  E S                 EE  E  ++V ++K          +LY+ N
Sbjct: 76  ---FFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGN 135

Query: 122 LPWSFSVVDIKELFGQCGTITDVEIIKQK-NGRSRGFAFVTMASPDEAQAAILKFDSQEI 181
           LP++ +  ++ ++FG+ GT+ DV+I+  K   RSRGF FVTM S +EA+ A+  F+S +I
Sbjct: 136 LPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 195

Query: 182 SGRVIKVEFARRLKKPPPPKPPGPPPGE-----------------TVNKLYVSNLAWKVR 241
            GR +KV F           P  P  GE                 + +K+Y  NL W + 
Sbjct: 196 GGRTVKVNF-----------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLT 255

Query: 242 SSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLR 284
           S  L++ F +    + A+V+++  +GRS G+GF+SF + E  ++AL+++ G E+ GR LR
Sbjct: 256 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 315

[Close]

BLAST of HG10003008 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-28
Identity = 87/238 (36.55%), Postives = 124/238 (52.10%), Query Frame = 0


Query: 33  LRISFSSPLLSLNPTTAISPLSLNPSRNRGGGRLCSAVQEVSLEEASEQ-------NQDV 92
           LR +FS+P           PL ++        R+ S    V LEE  +        +   
Sbjct: 32  LRFNFSTP----------KPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPA 91

Query: 93  NQKKKLYIFNLPWSFSVVDIKELFGQCGTITDVEIIKQKN-GRSRGFAFVTMASPDEAQA 152
               KLY  NLP++     + ++         VE++  ++ G+SRGFAFVTM++ ++   
Sbjct: 92  AVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNI 151

Query: 153 AILKFDSQEISGRVIKVEFARRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREF 212
            I   D  E  GR +KV FA    KP P K P  P  ET +KL+V NL+W V S +L   
Sbjct: 152 IIDNLDGTEYLGRALKVNFA---DKPKPNKEPLYP--ETEHKLFVGNLSWTVTSESLAGA 211

Query: 213 FSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 263
           F E  + V ARVVFD  +GRS GYGFV ++++ E ETAL SL+G EL GR +R+  ++
Sbjct: 212 FRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254

The following BLAST results are available for this feature:

BLAST of HG10003008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904114.1	3.3e-139	94.06	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
KAG6577717.1	2.3e-137	91.64	hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008448669.1	3.4e-136	90.88	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
XP_011650340.1	7.5e-136	89.24	29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus] >KGN55743.1 hypothet...	[more]
XP_023007582.1	1.1e-134	89.12	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima]	[more]

BLAST of HG10003008 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	1.8e-31	36.05	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	7.0e-28	29.45	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19683	1.2e-27	35.23	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08935	1.6e-27	33.07	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q9ZUU4	3.0e-26	32.82	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]

BLAST of HG10003008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK84	1.6e-136	90.88	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ...	[more]
A0A0A0L1U2	3.6e-136	89.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1	[more]
A0A6J1KZ42	5.2e-135	89.12	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115...	[more]
A0A6J1E5Z7	2.0e-134	90.28	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5A7UAR3	5.8e-134	90.18	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of HG10003008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35410.1	1.8e-74	56.49	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.1	1.5e-33	35.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	2.0e-33	39.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	5.0e-29	29.45	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	1.9e-28	36.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..162 e-value: 5.3E-26 score: 102.4 coord: 186..259 e-value: 1.3E-21 score: 87.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 91..160 e-value: 1.5E-17 score: 63.2 coord: 187..257 e-value: 1.6E-17 score: 63.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 185..263 score: 18.018063
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 89..166 score: 18.785557
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 169..273 e-value: 7.8E-24 score: 86.4 coord: 57..168 e-value: 3.6E-28 score: 100.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..277
None	No IPR available	PANTHER	PTHR48025:SF6	CHLOROPLAST, PUTATIVE-RELATED	coord: 6..274
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 6..274
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 170..264
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 80..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10003008.1	HG10003008.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding