HG10002992 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002992
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CS domain-containing protein
Location	Chr11: 16120303 .. 16126730 (-)
RNA-Seq Expression	HG10002992
Synteny	HG10002992

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGCATTCGCTTCCAATTCCACCGGTCTTACTTCCTGCGCCGGCCTCTCCCCTTCGACTTCTCGTTTCAGTTCCCGTTTCACTCGTAACTGCTCTTCCAGCACCGCTACAGTTCGCACTTTGGATTAGGAGGTACTTATTCTGTGCGATGTTTTGTTGGTTTGTGCAAAAGTTAGGATTGTAAATCGTATGCAAAAATTGGAATTACGAGGTACTGCAATTAAAAAAAAAAGAAGTATTTCGTTGAATTTCTCTGTAGTCTATCATATGTATTAGCTGCGTTCAGAATTTTTGGAAGTATTTCTTGGATAACCTTTCGCATTTCCTTCCAAAAGCGTTAAGGACTGTATCTAGACTGGCTATTGTTAGAATTTTGTAAATGGAAGAGAAATTTGCTTCTCTTTTCAATTTGTTATCTTTAGAAACGGCGTATCTGGTCAACATACGGTGAGGAGCTAGAGGTTAGAGAGCTGAAGTTTTGTATGCAGATGCCTCGTTGAAGCTATGGTGAAAATTTGGGCGTAGACATGTAAATAGTTTATTGGAAAAGAATAATCAATCCATTTGCATCAATTTAATGCATATAATGTTTGAAACAAATTGGTTTATATATTCTATAATTATGATGATCCACTAGAATAGGATAAGAAATGGCAGGAAGAATTATAATAATTGTTATGGTTGCATGTGTTGTGGCCATCAGATGATGAGTTCTTACATCATATAGGCGTTAGCACTTCATATCTCATGCTTAAACTCAGTAAGGACGATTTTCTTATTCATCCTGTATTTGGAGTTGCCTTTTTCTTCGTTCACCAGTCTTTAACCCCCTACTTACTAGATGAAATTTCATGCAGTTCACCGATAGTTCTTCTGAAGTGGAACTGAGGTTACAACTTGGGACTCAGGACATTCGTAGTTCAAAAGATGTTTATGTGGATGCAAATGAAACCTCTTTGACTATTAGAGTTCAACGCCTGGGGTCTATCATAACTCTTCTAGAAACAAAGCAACTATTTGAGAAAATAAAACCTGCGGAAACAATATGGTTTGTTGTTGTCATGGTAAGATAACCTACACCACTATGAATTTCAATGACTAAATATGGCATTTCTTAGGTTGAATAGGTATATTGATGAAGATCAACTAGTTATAAATTTAAAGAAGCATGATCCAGACTTAAAATGGCCCGACATAGTAGAGTCTTGGGAATCTCTAACAGCAGGATCTACCCAGCTTCTAAAAGGAACTTCTATATTTTTGGTAGGGGATTCAACAGATATTAACCAAAAAGTTTCCCATGAACTCGCAGTTGAATTGGGTAGTTTATTTTCTCTATCTTGGGTCACTTTCATTTTTCCCATGGTCTAAGTTGACAATGGTCGTCACGTAAATTGTTAGTTTATTTGAAACAACTGATTCTATGCTTTCCAGGTAATGGTCATCAACTGAATTGTGGCCTTGTAACGTAACAACTTAAACCAGGCAAATATTTTATCGCCGGATACTTCATCGGTTATCATAGGCAAGAAAAACATTAACTTCCCCTTCTCAATTATTAACGTAAAGAACTCTGAGAAATTAATGCCCTCCCCAGTGTTTCAAAAATCCCACTGAACCGTGTGCCTAGACCCAAGGCATGGCCTCAATGCCTTGCTTTACTCCAAGTGAAAATAGTTATAAATCACTGATTGAGGGTCTAAATTAATTCCCTCGTAAAAGTTTAGGGTTAAATTGAGATAATTATTAGTTTTAGGTTTTAATTGATATAATCAAGCCAACTTTGAAGGAAGAAATCCATGTAGATTCTTAAGGCCTTTTTTTTTTCCCTACAATCTCAAATAAAAACTATAATTTCTTAAAATTTTCACCATCTTATTATTTGTCATACAATATTTCTTCATATATATATTTCTATTGTGCACTCATAAAAATTAAAAATAAAAAAAAAAAAAAAAAAACCTACACTTTTTTCTATTTGCCTCGCACTTAAGCCTTGGAGGGCTATTGCGCTGTAGTGTGCCTCAAGCTTTTAAAAACACTAGCCCTTTTTAGAATTTTTCCTGCTAATTTTGTCAAACTTTCATCTGATAATTTTTTTTGGCATGATTCTTAGGTATACTCCATTGAGTACAAAAGAACTCCTGGAAACATTTTCCAAGCAGACCATTGATTCATGTAAGTACTATTTAACCTAGACATGCTTTGATGCCACTAATCAATGTCAAGGTCTTATAAACTTTTGTCCCTTTTCACAACAATCACCTTCGGAAGTTTTTCTCGAGAGGTGACGAATTCCCTTAACTACTAACAATTTTATAATTTGGTCTATATCTATTCTGAGGTCAGAATGTTATGTGCTTGATCTCTGTTTCTCATCTCTTAGAAAAGTGTAGAATGCCTTCACCAGAAAAAAGGGCCACCAAGCCAAAAGGGAAGTACAGAGAAACTTGCACAAAAAAAAGATCCCCAACTTTTGGTAATAGTAAATAGAGGGTAATCACGAAATAAATTTGAATTAGGAGTCCAGAAGGAAGCGCTATATGTGCTGCCTCCTCATGCAACTTCTTCTGCTTCTTGAAATGGGGACTCAAAACTCTACCCCAACCAATCCCACTTTATGGATGTAAAAGGGCCCAAGGAATATGATTCAAATCCGCTGCCATGCTCTTACACACCAGTCACGACCAAAGACAAGAGACTGAAAGAGTAGCTTTGGTATTAATTCTTCTGAGGGCAGCAACCCAGAAAAGAGCTGCATGTTCTCTGAAATTTTCAACTTCCACAAAGTAAAGAAGAAAGAGTGAGTGAGTCAGAAGAAATTGGACACCAATTGATGCAACAAAGAATTTCAAGAGAAGATCTCAAATATTTCTTACCCTAGAGACAATGGTGACCATATCTGGTGGTGGAAACAATCAACTAGTGAAAGGGTAAATGGGAGGCTAACTCCTTGATGTCACCATCGGAGAGGGCCCTCTAGTGGATCATAGTTGAGATTAGATGATTTTTTGGAGATGGCCATCGTGGAAATCAGAGGGAATTTGCAACTGGGAGGGACTAGTACAGATCCTATTATCCTTCCAAAATCGAAACTCTACTGCCATCCCCTGTAGGGAAAATAAGATAAAGGTAATGAAAGGGAGAAACTTGAGAGACTGGGGGAGATAATCTTACAATGACTTCTGTAGGTGCTTTTAGGGTTATAGACACTGCCTGCATTTCAGTTGATAAAATGAAACTCACATGTAATTATTATTGTTTAATGTAACAAAGCCTGGAGTTTTAAAGGGAACCTCACAACCATTTTAGAGAGGCTACATTTTTGTAGTTTAATTTTCCTATTCCTAGCCCCTTTCTCACTAGTTCCCAATACAACATTCCAATTCCCGAGTGTGACCCACCACCTTCCTCTACATTTTCTCGTTAGAAATCTCTCGTAGCCTTTTCCAACTTGTTCTTCATTTTTTTCAAGATTTTTTAAGAGAAGTGAAACACAAAATGGTACTGCTTAGCACAACCCCTCCTTTGATTGAAAAAGAAAAAGAAAAAGAAAAAAATCCTCCTAGACAAAAGTTTCTTTCCACCCTTCCTTCACCATTGTGTGAGAGTCCGATTAAGAGATGTATTGGTAATATTAGTAGGATAATGGTAAGGGCAAAGTGGTAATTAGCTAGTGGCGTCTTGGTTATAAATAAGGAGAATTGCACCTTAGGCATGGGGGATCATTTTGGTAAAGATTATCCATTGTGGGACTTTGGGAGAGAGGTGTTGATATTTTTTGTGTTTGGATACTGACATTAACCATGCCGCTATCTTTTATAAAACCATTCCCACAACTTGGGCAAAAGAAATAAAGACGAGTGCTCCCTGGCACCATTTTCACAAAGCAATTGGACTTTGTGTTGGGATTTTCCTAACAAGGAACAAAACAGAAAACACAGAGATAAAACCTAAGGAACTCACGTAACCTCACTACTGCCCTATTTGAAATTTTCAAGATTTGCAGCAAGGGTTTTTGCAGATACAAAGATAGATGTTGAAAGATACTTCAACAATTGTGTTAGGAGTGCAAGTAGAGTCTCGTATTGGCTTGGAAAGGAAACGTATAAGTGAGGACAACTATCTCTATTGGTATGAGGCTTTTTGGGTGGTTCCGAAAGTAAAGCCATAACATTTTTTGCCTAAAGTGGATAATTCATGCCATTATGGAGATTTGTAGAGGGTTTATTGTCCTTATCAAATTGCAAATTGTTTCCAAATCTATAACTTGGATTTTTTAGCAAACTGGTGTTGCCTAAGAAAAAGAGAGGATTCTTTCCAAGAAGTCTAAACTCGATCTTTATTATCAATCAAATGAATGAATTCGAGAGAGTATCTCACTCTCTCTATATATTTATAGTGGATTGGAAAACAAATTAAGAACAAGAAATATGAAAAGGAAACTAAAAGGATTTAACCAAGAATTAACCCAAAGGATTCTCTTAAAACTACTGACCCTTGGTTCCTTTTCACCATTCCTCGCATGCATATCTACAATAGGAGGCTTAACACCAAGTCCTTATGATTTACCATTTACCTCAAAATTTGATTGTGCTAACTCAGACTAGAGAACCAAAATTGCCTTACATGCTTAAAATGACTTTTATCCCCGATTTTGCAGTGTGTTAATGACTAATCAATTCCAGGGATGCTTGCTGAAGGCTCCGATGCTGTAGCACAAGCAGAAAACGCTGTATTAGAAAGTTTAAGCAGGTATGTTTAACACTTGCCTTGTCTTTTAGTATTTGGTTGATTAATAGAATTCGAGGATGTATGTTCTTCTTCCTGTTGATTACACAGCCATGTCCGTGCTGTTGTTGCAACATTAGGAGGTCGACCGGGAGCTGCAGGAAGGACTGATACTTGGAGACATCTTTATGCAGGATTCACTGTCTGGCTTTCACAAACTGAAGCTACAGGTAATACATTGTCTCTGTTCCATTTAGTTCCAAAATTTTCATGCCCATCTTGATTTTGCCCTTTCTTTTCCACCAGTTGATGAAAAACCCCATTCAAAGTTTTGCAAAATTTTCTGTTTACAAGATTGCATGAGGTCCATTTCTAGTTCTCTAAAGATGCAAATTTTAACGTACATTCACTTGGAACTTTCCTTGTTGGTGCTTTAAATACAGATGAAAGTGCAGCTAAGGAAGAAGCTAGGAGACACATGCAAGACAGTAAGCTAGCATACTCAAATGCAGAAGTGGTAGTTAAACTTCAGGGTTGGGATGATGCTCATTCCAAAGCAGTGGCTCAGGCAGCATTAAGTGCCCTTAAGCAACTTATTCTCTCAGACAAAAACCTTCCAGGTACAATTTGTGTTGCGCAATCTCGAATTCATCTCATACAGAAATGTTTTTCTGCATGTCAAAGAGAATTAGGAGAATATTGAAGCTTATATCCTAGTCATTAGTTCAAACAGCATTACAATTACTGATAGATAAAATGACTGATTTCTAATTTCCTAAAGATCTGATTCCATCTGAATTATGATCCTTACAAATATGATATCATATTGACTGATAATTGTCAAAATTTTGATGTAATTAAATTTACTGTGACCCTTCAATTTAAGTTTTTGAGTTGCTACTAAAGCAGAAGGTCAAACATTTAAATTTCTGTAACATCATTTCCTATCCAATTAATATTAATTTTCCACTTGTTAGGACTTCCACAAATCTTCAAGCTTTATAAGTGGGAGAGTAGTGAAGTATGGGTATAACTGTATAACTAGATATAATCCTTTAGCTTAAACTTTTGGTTTGTCTGGTGATTTAATAATAGTAATGCTAGTTTTTGTGCCAATTTTATAAACCTTACCATTGTCGATATGAAGTCCCATATTTAGCTTGAACTTTGAAGTCATAGGTTAGTTACGACTCAAAAACACTCGTAACCAACAAGAATGTGTAGGCACAACATTATTTTGCTGGGGCAGCCTAAAAATAATTCATCATCATGTTTCTAAGGGACCGCCCATTTTTCCAGATTTGCAATTTATTTCATGCTTTTGACCCGATATTTCGACGACGTATCCATCAATCATTAGTAGCTTCATACCAATGTTATTGATTAAAAGAATACAATTGAAAGAAGTGTTCAATTTTATATATAGTGGAACCACCTTCTGAAGGAACAACTTTTGATCTTGTGATCTGATTTCATATTAAAGTTGGCGACAGCCTCGTGTCGATTTTCTCTAGTAGTTCATGTGATTCGAGTATATTTCGATTAAGTGGTTTGGTCTGCTATGTTAATGTAGATAAGAAAAGTCTTTACATCCGGTTGGGATGTCGTGGTGATTGGCCGAACATCAAACCTCCAGGTTGGGATCCTGCTTCCGATGGAAAAACAAACAACACCAACGCCCGTAGTACTTGA

mRNA sequence

ATGGCGTCGCATTCGCTTCCAATTCCACCGGTCTTACTTCCTGCGCCGGCCTCTCCCCTTCGACTTCTCGTTTCAGTTCCCGTTTCACTCGTAACTGCTCTTCCAGCACCGCTACAGTTCGCACTTTGGATTAGGAGAAACGGCGTATCTGGTCAACATACGTTCACCGATAGTTCTTCTGAAGTGGAACTGAGGTTACAACTTGGGACTCAGGACATTCGTAGTTCAAAAGATGTTTATGTGGATGCAAATGAAACCTCTTTGACTATTAGAGTTCAACGCCTGGGGTCTATCATAACTCTTCTAGAAACAAAGCAACTATTTGAGAAAATAAAACCTGCGGAAACAATATGGTATACTCCATTGAGTACAAAAGAACTCCTGGAAACATTTTCCAAGCAGACCATTGATTCATGGATGCTTGCTGAAGGCTCCGATGCTGTAGCACAAGCAGAAAACGCTGTATTAGAAAGTTTAAGCAGCCATGTCCGTGCTGTTGTTGCAACATTAGGAGGTCGACCGGGAGCTGCAGGAAGGACTGATACTTGGAGACATCTTTATGCAGGATTCACTGTCTGGCTTTCACAAACTGAAGCTACAGATGAAAGTGCAGCTAAGGAAGAAGCTAGGAGACACATGCAAGACAGTAAGCTAGCATACTCAAATGCAGAAGTGGTAGTTAAACTTCAGGGTTGGGATGATGCTCATTCCAAAGCAGTGGCTCAGGCAGCATTAAGTGCCCTTAAGCAACTTATTCTCTCAGACAAAAACCTTCCAGATAAGAAAAGTCTTTACATCCGGTTGGGATGTCGTGGTGATTGGCCGAACATCAAACCTCCAGGTTGGGATCCTGCTTCCGATGGAAAAACAAACAACACCAACGCCCGTAGTACTTGA

Coding sequence (CDS)

ATGGCGTCGCATTCGCTTCCAATTCCACCGGTCTTACTTCCTGCGCCGGCCTCTCCCCTTCGACTTCTCGTTTCAGTTCCCGTTTCACTCGTAACTGCTCTTCCAGCACCGCTACAGTTCGCACTTTGGATTAGGAGAAACGGCGTATCTGGTCAACATACGTTCACCGATAGTTCTTCTGAAGTGGAACTGAGGTTACAACTTGGGACTCAGGACATTCGTAGTTCAAAAGATGTTTATGTGGATGCAAATGAAACCTCTTTGACTATTAGAGTTCAACGCCTGGGGTCTATCATAACTCTTCTAGAAACAAAGCAACTATTTGAGAAAATAAAACCTGCGGAAACAATATGGTATACTCCATTGAGTACAAAAGAACTCCTGGAAACATTTTCCAAGCAGACCATTGATTCATGGATGCTTGCTGAAGGCTCCGATGCTGTAGCACAAGCAGAAAACGCTGTATTAGAAAGTTTAAGCAGCCATGTCCGTGCTGTTGTTGCAACATTAGGAGGTCGACCGGGAGCTGCAGGAAGGACTGATACTTGGAGACATCTTTATGCAGGATTCACTGTCTGGCTTTCACAAACTGAAGCTACAGATGAAAGTGCAGCTAAGGAAGAAGCTAGGAGACACATGCAAGACAGTAAGCTAGCATACTCAAATGCAGAAGTGGTAGTTAAACTTCAGGGTTGGGATGATGCTCATTCCAAAGCAGTGGCTCAGGCAGCATTAAGTGCCCTTAAGCAACTTATTCTCTCAGACAAAAACCTTCCAGATAAGAAAAGTCTTTACATCCGGTTGGGATGTCGTGGTGATTGGCCGAACATCAAACCTCCAGGTTGGGATCCTGCTTCCGATGGAAAAACAAACAACACCAACGCCCGTAGTACTTGA

Protein sequence

MASHSLPIPPVLLPAPASPLRLLVSVPVSLVTALPAPLQFALWIRRNGVSGQHTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIKPAETIWYTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVVATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVVKLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASDGKTNNTNARST

Homology

[Close]

BLAST of HG10002992 vs. NCBI nr
Match: KAG6577731.1 (putative inactive shikimate kinase like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 426.0 bits (1094), Expect = 2.6e-115
Identity = 225/279 (80.65%), Postives = 234/279 (83.87%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTD SSEVELRLQL TQDIRSSKDV+VDANETSLTIRV+RLGSI+TLLETKQLFEKIK
Sbjct: 78  YEFTDGSSEVELRLQLETQDIRSSKDVFVDANETSLTIRVRRLGSIVTLLETKQLFEKIK 137

Query: 113 PAETIW------------------------------------YTPLSTKELLETFSKQTI 172
           PAETIW                                    YTPLSTKELLETFSKQ I
Sbjct: 138 PAETIWYIDEDQLLLKGTSIYLIGDSTDINQKVAHELAVGLGYTPLSTKELLETFSKQNI 197

Query: 173 DSWMLAEGSDAVAQAENAVLESLSSHVRAVVATLGGRPGAAGRTDTWRHLYAGFTVWLSQ 232
           DSWMLAEGS+AVAQAENAVLESLSSHVR VVATLGGRPGAA RTDTWRHLYAGFT+WLSQ
Sbjct: 198 DSWMLAEGSEAVAQAENAVLESLSSHVRTVVATLGGRPGAARRTDTWRHLYAGFTIWLSQ 257

Query: 233 TEATDESAAKEEARRHMQDSKLAYSNAEVVVKLQGWDDAHSKAVAQAALSALKQLILSDK 292
           TEATDESAAKEEARRHMQDSK+AYSNAEVVVKLQGWDDAHSKAVAQAALSALKQL+LSDK
Sbjct: 258 TEATDESAAKEEARRHMQDSKVAYSNAEVVVKLQGWDDAHSKAVAQAALSALKQLVLSDK 317

Query: 293 NLPDKKSLYIRLGCRGDWPNIKPPGWDPASDGKTNNTNA 296
           NLPDKKSLYIRLGCRGDWPNIKPPGWDPASD  T NT+A
Sbjct: 318 NLPDKKSLYIRLGCRGDWPNIKPPGWDPASDEDTKNTSA 356

[Close]

BLAST of HG10002992 vs. NCBI nr
Match: XP_038892435.1 (probable inactive shikimate kinase like 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 422.2 bits (1084), Expect = 3.8e-114
Identity = 231/308 (75.00%), Postives = 238/308 (77.27%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK
Sbjct: 77  YEFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 136

Query: 113 PAETIW------------------------------------------------------ 172
           PAETIW                                                      
Sbjct: 137 PAETIWYIDEDQLVINLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIFLIGDSTDINQ 196

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      YTPLSTKELLETFSKQTI+SWMLAEG +AVAQAEN VLESLSSHVRAVV
Sbjct: 197 KVAHELAVGLGYTPLSTKELLETFSKQTINSWMLAEGFEAVAQAENTVLESLSSHVRAVV 256

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 292
           ATLGG+ GAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV
Sbjct: 257 ATLGGQLGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 316

Query: 293 KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD 296
           KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD
Sbjct: 317 KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD 376

[Close]

BLAST of HG10002992 vs. NCBI nr
Match: XP_022965359.1 (probable inactive shikimate kinase like 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 420.6 bits (1080), Expect = 1.1e-113
Identity = 229/308 (74.35%), Postives = 235/308 (76.30%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTD SSEVELRLQL TQDIRSSKDV+VDANETSLTIRV+RLGSI+TLLETKQLFEKIK
Sbjct: 77  YEFTDGSSEVELRLQLETQDIRSSKDVFVDANETSLTIRVRRLGSIVTLLETKQLFEKIK 136

Query: 113 PAETIW------------------------------------------------------ 172
           PAETIW                                                      
Sbjct: 137 PAETIWYIDEDQLVISLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIYLIGDATDINQ 196

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      YTPLSTKELLETFSKQ IDSWMLAEGSDAVAQAENAVLESLSSHVR VV
Sbjct: 197 KVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQAENAVLESLSSHVRTVV 256

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 292
           ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSK+AYSNAEVVV
Sbjct: 257 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKVAYSNAEVVV 316

Query: 293 KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD 296
           KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD
Sbjct: 317 KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD 376

[Close]

BLAST of HG10002992 vs. NCBI nr
Match: XP_008448645.1 (PREDICTED: probable inactive shikimate kinase like 2, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 419.5 bits (1077), Expect = 2.5e-113
Identity = 229/304 (75.33%), Postives = 234/304 (76.97%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK
Sbjct: 77  YEFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 136

Query: 113 PAETIW------------------------------------------------------ 172
           PAETIW                                                      
Sbjct: 137 PAETIWYIDEDQLVINLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIFLIGDSTDINQ 196

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      YTPLSTKELLETFSKQTIDSWMLAEGS+AVAQAEN V+ESLSSHVRAVV
Sbjct: 197 KVAHELAVGLGYTPLSTKELLETFSKQTIDSWMLAEGSNAVAQAENTVIESLSSHVRAVV 256

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 292
           ATLGGR GAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEA+RHMQDS+LAYSNAEVVV
Sbjct: 257 ATLGGRLGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEAKRHMQDSQLAYSNAEVVV 316

[Close]

BLAST of HG10002992 vs. NCBI nr
Match: KAA0053020.1 (putative inactive shikimate kinase like 2 [Cucumis melo var. makuwa])

HSP 1 Score: 419.1 bits (1076), Expect = 3.2e-113
Identity = 229/302 (75.83%), Postives = 233/302 (77.15%), Query Frame = 0


Query: 55  FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIKPA 114
           FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIKPA
Sbjct: 128 FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIKPA 187

Query: 115 ETIW-------------------------------------------------------- 174
           ETIW                                                        
Sbjct: 188 ETIWYIDEDQLVINLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIFLIGDSTDINQKV 247

Query: 175 ---------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVVAT 234
                    YTPLSTKELLETFSKQTIDSWMLAEGS+AVAQAEN V+ESLSSHVRAVVAT
Sbjct: 248 AHELAVGLGYTPLSTKELLETFSKQTIDSWMLAEGSNAVAQAENTVIESLSSHVRAVVAT 307

Query: 235 LGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVVKL 292
           LGGR GAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEA+RHMQDS+LAYSNAEVVVKL
Sbjct: 308 LGGRLGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEAKRHMQDSQLAYSNAEVVVKL 367

[Close]

BLAST of HG10002992 vs. ExPASy Swiss-Prot
Match: O82290 (Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SKL2 PE=2 SV=2)

HSP 1 Score: 319.7 bits (818), Expect = 3.5e-86
Identity = 171/300 (57.00%), Postives = 203/300 (67.67%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTD   EVELRL+L T +I S KD+ VDA+ TSL ++ +R G +ITLLET  LFEKI 
Sbjct: 80  YEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVKEKRNGLLITLLETNHLFEKIM 139

Query: 113 PAETIW------------------------------------------------------ 172
           P+ETIW                                                      
Sbjct: 140 PSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAGMMQLLKGASIYIVGDSTEINQ 199

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      Y+PL +KELLE+FSKQTIDSW+LAEG D+VA+AE++VLESLSSHVR VV
Sbjct: 200 KVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPDSVAEAESSVLESLSSHVRTVV 259

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 288
           +TLGG+ GAAGR D WRHLY+GFTVW+SQTEATDE +AKEEARR  Q+ ++ YSNA+VVV
Sbjct: 260 STLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEESAKEEARRSKQEREIGYSNADVVV 319

[Close]

BLAST of HG10002992 vs. ExPASy TrEMBL
Match: A0A6J1HQS7 (probable inactive shikimate kinase like 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465239 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 5.4e-114
Identity = 229/308 (74.35%), Postives = 235/308 (76.30%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTD SSEVELRLQL TQDIRSSKDV+VDANETSLTIRV+RLGSI+TLLETKQLFEKIK
Sbjct: 77  YEFTDGSSEVELRLQLETQDIRSSKDVFVDANETSLTIRVRRLGSIVTLLETKQLFEKIK 136

Query: 113 PAETIW------------------------------------------------------ 172
           PAETIW                                                      
Sbjct: 137 PAETIWYIDEDQLVISLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIYLIGDATDINQ 196

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      YTPLSTKELLETFSKQ IDSWMLAEGSDAVAQAENAVLESLSSHVR VV
Sbjct: 197 KVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQAENAVLESLSSHVRTVV 256

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 292
           ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSK+AYSNAEVVV
Sbjct: 257 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKVAYSNAEVVV 316

Query: 293 KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD 296
           KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD
Sbjct: 317 KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD 376

[Close]

BLAST of HG10002992 vs. ExPASy TrEMBL
Match: A0A1S3BL22 (probable inactive shikimate kinase like 2, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490754 PE=4 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 1.2e-113
Identity = 229/304 (75.33%), Postives = 234/304 (76.97%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK
Sbjct: 77  YEFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 136

Query: 113 PAETIW------------------------------------------------------ 172
           PAETIW                                                      
Sbjct: 137 PAETIWYIDEDQLVINLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIFLIGDSTDINQ 196

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      YTPLSTKELLETFSKQTIDSWMLAEGS+AVAQAEN V+ESLSSHVRAVV
Sbjct: 197 KVAHELAVGLGYTPLSTKELLETFSKQTIDSWMLAEGSNAVAQAENTVIESLSSHVRAVV 256

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 292
           ATLGGR GAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEA+RHMQDS+LAYSNAEVVV
Sbjct: 257 ATLGGRLGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEAKRHMQDSQLAYSNAEVVV 316

[Close]

BLAST of HG10002992 vs. ExPASy TrEMBL
Match: A0A5A7UCT5 (Putative inactive shikimate kinase like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G001320 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.6e-113
Identity = 229/302 (75.83%), Postives = 233/302 (77.15%), Query Frame = 0


Query: 55  FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIKPA 114
           FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIKPA
Sbjct: 128 FTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIKPA 187

Query: 115 ETIW-------------------------------------------------------- 174
           ETIW                                                        
Sbjct: 188 ETIWYIDEDQLVINLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIFLIGDSTDINQKV 247

Query: 175 ---------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVVAT 234
                    YTPLSTKELLETFSKQTIDSWMLAEGS+AVAQAEN V+ESLSSHVRAVVAT
Sbjct: 248 AHELAVGLGYTPLSTKELLETFSKQTIDSWMLAEGSNAVAQAENTVIESLSSHVRAVVAT 307

Query: 235 LGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVVKL 292
           LGGR GAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEA+RHMQDS+LAYSNAEVVVKL
Sbjct: 308 LGGRLGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEAKRHMQDSQLAYSNAEVVVKL 367

[Close]

BLAST of HG10002992 vs. ExPASy TrEMBL
Match: A0A6J1EA09 (probable inactive shikimate kinase like 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431221 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 7.8e-113
Identity = 227/308 (73.70%), Postives = 233/308 (75.65%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTD SSEVELRLQL TQDIRSSKDV+VDANETSLTIRV+RLGSI+TLLETKQLFEKIK
Sbjct: 78  YEFTDGSSEVELRLQLETQDIRSSKDVFVDANETSLTIRVRRLGSIVTLLETKQLFEKIK 137

Query: 113 PAETIW------------------------------------------------------ 172
           PAETIW                                                      
Sbjct: 138 PAETIWYIDEDQLVISLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIYLIGDATDINQ 197

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      YTPLSTKELLETFSKQ IDSWMLAEGSDAVAQAENAVLESLSSHVR VV
Sbjct: 198 TVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQAENAVLESLSSHVRTVV 257

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 292
           ATLGGR GAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSK+AYSNAEVVV
Sbjct: 258 ATLGGRQGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKVAYSNAEVVV 317

Query: 293 KLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD 296
           KLQGWDDAHSKAVAQAALSALKQL+LSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD
Sbjct: 318 KLQGWDDAHSKAVAQAALSALKQLVLSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASD 377

[Close]

BLAST of HG10002992 vs. ExPASy TrEMBL
Match: A0A0A0L3V6 (CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008320 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.5e-111
Identity = 225/305 (73.77%), Postives = 231/305 (75.74%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTDSSSEVELRLQLGTQDIRSSKDVYVDAN+TSLTIRVQR GSIITLLETKQLFEKIK
Sbjct: 77  YEFTDSSSEVELRLQLGTQDIRSSKDVYVDANDTSLTIRVQRPGSIITLLETKQLFEKIK 136

Query: 113 PAETIW------------------------------------------------------ 172
           PAETIW                                                      
Sbjct: 137 PAETIWYIDEDQLVINLKKHDPDLKWPDIVESWESLTAGFAQLLKGTSIFLIGDSTDINQ 196

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      YTPLSTKELLET SKQTIDSWMLAEGSDAVAQ EN V+ESLSSHVRAVV
Sbjct: 197 KVAHELAVGLGYTPLSTKELLETLSKQTIDSWMLAEGSDAVAQVENTVIESLSSHVRAVV 256

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 292
           ATLGGR GAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEA+RHMQDS+LAYSNAEVVV
Sbjct: 257 ATLGGRLGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEAKRHMQDSQLAYSNAEVVV 316

[Close]

BLAST of HG10002992 vs. TAIR 10
Match: AT2G35500.1 (shikimate kinase like 2 )

HSP 1 Score: 319.7 bits (818), Expect = 2.5e-87
Identity = 171/300 (57.00%), Postives = 203/300 (67.67%), Query Frame = 0


Query: 53  HTFTDSSSEVELRLQLGTQDIRSSKDVYVDANETSLTIRVQRLGSIITLLETKQLFEKIK 112
           + FTD   EVELRL+L T +I S KD+ VDA+ TSL ++ +R G +ITLLET  LFEKI 
Sbjct: 80  YEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVKEKRNGLLITLLETNHLFEKIM 139

Query: 113 PAETIW------------------------------------------------------ 172
           P+ETIW                                                      
Sbjct: 140 PSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAGMMQLLKGASIYIVGDSTEINQ 199

Query: 173 -----------YTPLSTKELLETFSKQTIDSWMLAEGSDAVAQAENAVLESLSSHVRAVV 232
                      Y+PL +KELLE+FSKQTIDSW+LAEG D+VA+AE++VLESLSSHVR VV
Sbjct: 200 KVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPDSVAEAESSVLESLSSHVRTVV 259

Query: 233 ATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKLAYSNAEVVV 288
           +TLGG+ GAAGR D WRHLY+GFTVW+SQTEATDE +AKEEARR  Q+ ++ YSNA+VVV
Sbjct: 260 STLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEESAKEEARRSKQEREIGYSNADVVV 319

The following BLAST results are available for this feature:

BLAST of HG10002992 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577731.1	2.6e-115	80.65	putative inactive shikimate kinase like 2, chloroplastic, partial [Cucurbita arg...	[more]
XP_038892435.1	3.8e-114	75.00	probable inactive shikimate kinase like 2, chloroplastic [Benincasa hispida]	[more]
XP_022965359.1	1.1e-113	74.35	probable inactive shikimate kinase like 2, chloroplastic [Cucurbita maxima]	[more]
XP_008448645.1	2.5e-113	75.33	PREDICTED: probable inactive shikimate kinase like 2, chloroplastic isoform X1 [...	[more]
KAA0053020.1	3.2e-113	75.83	putative inactive shikimate kinase like 2 [Cucumis melo var. makuwa]	[more]

BLAST of HG10002992 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82290	3.5e-86	57.00	Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of HG10002992 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQS7	5.4e-114	74.35	probable inactive shikimate kinase like 2, chloroplastic OS=Cucurbita maxima OX=...	[more]
A0A1S3BL22	1.2e-113	75.33	probable inactive shikimate kinase like 2, chloroplastic isoform X1 OS=Cucumis m...	[more]
A0A5A7UCT5	1.6e-113	75.83	Putative inactive shikimate kinase like 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A6J1EA09	7.8e-113	73.70	probable inactive shikimate kinase like 2, chloroplastic OS=Cucurbita moschata O...	[more]
A0A0A0L3V6	2.5e-111	73.77	CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008320 PE=4 SV=...	[more]

BLAST of HG10002992 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35500.1	2.5e-87	57.00	shikimate kinase like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 113..262 e-value: 5.9E-8 score: 34.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..298
None	No IPR available	PANTHER	PTHR21087	SHIKIMATE KINASE	coord: 54..101 coord: 114..290
None	No IPR available	PANTHER	PTHR21087:SF23	INACTIVE SHIKIMATE KINASE LIKE 2, CHLOROPLASTIC-RELATED	coord: 54..101 coord: 114..290
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 45..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002992.1	HG10002992.1	mRNA