HG10002840 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002840
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr11: 14278735 .. 14279241 (+)
RNA-Seq Expression	HG10002840
Synteny	HG10002840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAGTGTAGTACCAAACGAGGAGCACTTATTGACGCCTTCGAGGGTAACGACGGCAGTGAGGATAAAGACAAAAGGCAAGAGAAATGCGAGAAGGAGGAAGGTGTGGAAAATGGTCCGGTAAGAGATATGGCGAGCTGCAACCTTGATCTTCATGAAATCAATAAAGCCATTATTGGTCGAGATCGTGATGCTTCTCATGCTAGGCGAGAAGTGAAGCTGCATCATCCTCTATGCAGCTTCCTTCAGGTAGTCATCGTTGGCCACGACAACTCAACAACAACAACAACCCTAGCACAGCCTCCCCACCGTGCCTACCACCATCCATGGCGGCCAAATACCACCATGAAATCTAAGCTCGCATCAACCACCCCACCGACAATGACTTCGAGATTGAGATCAAGATTCCACAGAAAGAAAACAGAAAAGGAAAAGAAAGAATTCCAAAAATCCCTCAAGATTCCCCTCCAATCCACGTCCTTCAATACAATACCAACAAATTAA

mRNA sequence

ATGGTAAAGTGTAGTACCAAACGAGGAGCACTTATTGACGCCTTCGAGGGTAACGACGGCAGTGAGGATAAAGACAAAAGGCAAGAGAAATGCGAGAAGGAGGAAGGTGTGGAAAATGGTCCGGTAAGAGATATGGCGAGCTGCAACCTTGATCTTCATGAAATCAATAAAGCCATTATTGGTCGAGATCGTGATGCTTCTCATGCTAGGCGAGAAGTGAAGCTGCATCATCCTCTATGCAGCTTCCTTCAGGTAGTCATCGTTGGCCACGACAACTCAACAACAACAACAACCCTAGCACAGCCTCCCCACCGTGCCTACCACCATCCATGGCGGCCAAATACCACCATGAAATCTAAGCTCGCATCAACCACCCCACCGACAATGACTTCGAGATTGAGATCAAGATTCCACAGAAAGAAAACAGAAAAGGAAAAGAAAGAATTCCAAAAATCCCTCAAGATTCCCCTCCAATCCACGTCCTTCAATACAATACCAACAAATTAA

Coding sequence (CDS)

ATGGTAAAGTGTAGTACCAAACGAGGAGCACTTATTGACGCCTTCGAGGGTAACGACGGCAGTGAGGATAAAGACAAAAGGCAAGAGAAATGCGAGAAGGAGGAAGGTGTGGAAAATGGTCCGGTAAGAGATATGGCGAGCTGCAACCTTGATCTTCATGAAATCAATAAAGCCATTATTGGTCGAGATCGTGATGCTTCTCATGCTAGGCGAGAAGTGAAGCTGCATCATCCTCTATGCAGCTTCCTTCAGGTAGTCATCGTTGGCCACGACAACTCAACAACAACAACAACCCTAGCACAGCCTCCCCACCGTGCCTACCACCATCCATGGCGGCCAAATACCACCATGAAATCTAAGCTCGCATCAACCACCCCACCGACAATGACTTCGAGATTGAGATCAAGATTCCACAGAAAGAAAACAGAAAAGGAAAAGAAAGAATTCCAAAAATCCCTCAAGATTCCCCTCCAATCCACGTCCTTCAATACAATACCAACAAATTAA

Protein sequence

MVKCSTKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRDASHARREVKLHHPLCSFLQVVIVGHDNSTTTTTLAQPPHRAYHHPWRPNTTMKSKLASTTPPTMTSRLRSRFHRKKTEKEKKEFQKSLKIPLQSTSFNTIPTN

Homology

[Close]

BLAST of HG10002840 vs. NCBI nr
Match: RWW62108.1 (hypothetical protein BHE74_00030780 [Ensete ventricosum] >RZS10942.1 hypothetical protein BHM03_00042253 [Ensete ventricosum])

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-13
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+ GAL+DA EG++G ED+D+ QE+ E E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 33  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 92

Query: 66  ASHARREVKLHHP 79
           ASHARRE  LH P
Sbjct: 93  ASHARRETNLHRP 105

[Close]

BLAST of HG10002840 vs. NCBI nr
Match: RWV88847.1 (hypothetical protein GW17_00049039 [Ensete ventricosum])

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-13
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+ GAL+DA EG++G ED+D+ QE+ E E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 33  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 92

Query: 66  ASHARREVKLHHP 79
           ASHARRE  LH P
Sbjct: 93  ASHARRETNLHRP 105

[Close]

BLAST of HG10002840 vs. NCBI nr
Match: RRT40574.1 (hypothetical protein B296_00032129 [Ensete ventricosum])

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-13
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+ GAL+DA EG++G ED+D+ QE+ E E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 38  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 97

Query: 66  ASHARREVKLHHP 79
           ASHARRE  LH P
Sbjct: 98  ASHARRETNLHRP 110

[Close]

BLAST of HG10002840 vs. NCBI nr
Match: RRT37498.1 (hypothetical protein B296_00047192, partial [Ensete ventricosum] >RZS21319.1 hypothetical protein BHM03_00053946, partial [Ensete ventricosum])

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-09
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+  AL+DA EG+DG EDKDK Q++ E E+GVE GPV ++A  +L LH++ ++I     D
Sbjct: 30  TEGRALVDALEGDDGGEDKDKGQQEGEDEDGVEEGPVGEVAGGDLHLHQVKESIAAGYCD 89

Query: 66  ASHARREVKLHHPLCSFLQVVIVGHDNSTTTTTLAQPPHRAYHHPWRPNTTMKSKLASTT 125
           ASHARRE  LH   CS  +        + T   +A P  R    P   +   + ++    
Sbjct: 90  ASHARREPYLHR-RCSRRRRASCRSSPALTPVAVAAPLTRESGPPVPLSKGTRYQIGGAA 149

Query: 126 PPTMTSRLRSR 137
              +T R R R
Sbjct: 150 TGRITWRSRGR 159

[Close]

BLAST of HG10002840 vs. NCBI nr
Match: RWW29472.1 (hypothetical protein GW17_00006001 [Ensete ventricosum])

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-09
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+  AL+DA EG+DG EDKDK Q++ E E+GVE GPV ++A  +L LH++ ++I     D
Sbjct: 30  TEGRALVDALEGDDGGEDKDKGQQEGEDEDGVEEGPVGEVAGGDLHLHQVKESIAAGYCD 89

Query: 66  ASHARREVKLHHPLCSFLQVVIVGHDNSTTTTTLAQPPHRAYHHPWRPNTTMKSKLASTT 125
           ASHARRE  LH   CS  +        + T   +A P  R    P   +   + ++    
Sbjct: 90  ASHARREPYLHR-RCSRRRRASCRSSPALTPVAVAAPLTRESGPPVPLSKGTRYQIGGAA 149

Query: 126 PPTMTSRLRSR 137
              +T R R R
Sbjct: 150 TGRITWRSRGR 159

[Close]

BLAST of HG10002840 vs. ExPASy TrEMBL
Match: A0A426XM74 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00032129 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+ GAL+DA EG++G ED+D+ QE+ E E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 38  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 97

Query: 66  ASHARREVKLHHP 79
           ASHARRE  LH P
Sbjct: 98  ASHARRETNLHRP 110

[Close]

BLAST of HG10002840 vs. ExPASy TrEMBL
Match: A0A444CSH1 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00049039 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+ GAL+DA EG++G ED+D+ QE+ E E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 33  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 92

Query: 66  ASHARREVKLHHP 79
           ASHARRE  LH P
Sbjct: 93  ASHARRETNLHRP 105

[Close]

BLAST of HG10002840 vs. ExPASy TrEMBL
Match: A0A444G3K2 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00006001 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+  AL+DA EG+DG EDKDK Q++ E E+GVE GPV ++A  +L LH++ ++I     D
Sbjct: 30  TEGRALVDALEGDDGGEDKDKGQQEGEDEDGVEEGPVGEVAGGDLHLHQVKESIAAGYCD 89

Query: 66  ASHARREVKLHHPLCSFLQVVIVGHDNSTTTTTLAQPPHRAYHHPWRPNTTMKSKLASTT 125
           ASHARRE  LH   CS  +        + T   +A P  R    P   +   + ++    
Sbjct: 90  ASHARREPYLHR-RCSRRRRASCRSSPALTPVAVAAPLTRESGPPVPLSKGTRYQIGGAA 149

Query: 126 PPTMTSRLRSR 137
              +T R R R
Sbjct: 150 TGRITWRSRGR 159

[Close]

BLAST of HG10002840 vs. ExPASy TrEMBL
Match: A0A426XDG2 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=B296_00047192 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 0


Query: 6   TKRGALIDAFEGNDGSEDKDKRQEKCEKEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 65
           T+  AL+DA EG+DG EDKDK Q++ E E+GVE GPV ++A  +L LH++ ++I     D
Sbjct: 30  TEGRALVDALEGDDGGEDKDKGQQEGEDEDGVEEGPVGEVAGGDLHLHQVKESIAAGYCD 89

Query: 66  ASHARREVKLHHPLCSFLQVVIVGHDNSTTTTTLAQPPHRAYHHPWRPNTTMKSKLASTT 125
           ASHARRE  LH   CS  +        + T   +A P  R    P   +   + ++    
Sbjct: 90  ASHARREPYLHR-RCSRRRRASCRSSPALTPVAVAAPLTRESGPPVPLSKGTRYQIGGAA 149

Query: 126 PPTMTSRLRSR 137
              +T R R R
Sbjct: 150 TGRITWRSRGR 159

The following BLAST results are available for this feature:

BLAST of HG10002840 vs. NCBI nr


Match Name	E-value	Identity	Description
RWW62108.1	4.8e-13	57.53	hypothetical protein BHE74_00030780 [Ensete ventricosum] >RZS10942.1 hypothetica...	[more]
RWV88847.1	4.8e-13	57.53	hypothetical protein GW17_00049039 [Ensete ventricosum]	[more]
RRT40574.1	4.8e-13	57.53	hypothetical protein B296_00032129 [Ensete ventricosum]	[more]
RRT37498.1	7.1e-09	37.40	hypothetical protein B296_00047192, partial [Ensete ventricosum] >RZS21319.1 hyp...	[more]
RWW29472.1	7.1e-09	37.40	hypothetical protein GW17_00006001 [Ensete ventricosum]	[more]

BLAST of HG10002840 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10002840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A426XM74	2.3e-13	57.53	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00032129 PE=4 SV=1	[more]
A0A444CSH1	2.3e-13	57.53	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00049039 PE=4 SV=1	[more]
A0A444G3K2	3.5e-09	37.40	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00006001 PE=4 SV=1	[more]
A0A426XDG2	3.5e-09	37.40	Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=B296_0004719...	[more]

BLAST of HG10002840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002840.1	HG10002840.1	mRNA