HG10002714 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002714
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionnon-specific lipid-transfer protein 2-like
LocationChr11: 10508192 .. 10511791 (-)
RNA-Seq ExpressionHG10002714
SyntenyHG10002714
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAGTTCTTGCAGTCACAGTTGTTTGTCTTTTCGTGGTGACTATGGCGGCCCTTCTCAGCAGCGCTCGTCTTGCAGAGGCGGTGAATTGCAGCCCTTTGGAGCTGAGCTCGTGTGCCGGGGCAATCACGTCGTTGTCGAACCCATCGGCTACTTGCTGCAGTAAGTTAAGAGAGCAACAACCATGCCTTTGTGGGTACATAAGGAACCCATCCTTGAGGCCTTATGTGAATTCTCCTGGCGCCAAAAATGTTGCTTCCAAATGTGGTGTTCCCTTCCCAACCTGTTAGAGGCCCTTGCTTTTGGGATGTGCTTTCCATATGGAAATAAGTTGGAATTATCTTATAATAAAGTCAAAGTATGAAAATAATAAAAAGGAAAAATTATCTATGGGTTTTTTTAAGTAGTTAGTACAAGTTCATGTCAGTTGAACTATGTTTATGTTTGATGATCTATATGTCCTTTTATTTATTTTTATCTCAAAGAAAATAATAAGTATGAACTATGTTTATAAGTTGGTATTTTCAGATTGGTGTGTTTTCTTTGTCAATCTTTCAACTTTTTTTTTTCATGTTGAAAAAGATTAGTATTGAAATAAAGTATGAAAACGTTAATTAAGACAATGGAAACAAAGTGGTGTAATTTAATTTCGACTTTTGGTCTAATTATGTCGGTTGGTTAGTTTTTATGATCTTAAATTTAATCAAAGTTATGTACACAAAAAAATTTAATCAAAATTAAACCTTAAAGTTTTGAATAAATTGTGCAATTAATATATAGAAAATTTTCGCTCAAACTATTTACAGAAAATAGTAAAAAAAAAAATAATAATGATAAACATTGAAAGACTTCTATTAGCATCTATGAGTGATAGATTTCTATCATTTCTAAAATTTTTACTAACATCTATTATAACTATCTAAAAATTTTACTATTTTATGTAAATAATTTCTTTTAATATATCCTCAATTCTTTTAATTAATTAAACTCTTTTCAATTAGAGTGGATTTGGACACCTTATTTCTGAGTTTGAGAATTTTATGCAAGTTTCTTCTAGGCAGAATTTAGTCTATTTTATTGGTTGGTTTTTAAGGAAAATTTGCAATCCAGTCTCAGAAGAACTTAAATATTAATCACACTTCTATAAAAGTAAATAAATAAATAAGACTTGCTAAAATATGCCAATGTTGGTTCTGATGGGTTTTCTTTTTTTAAGCAAAATTTGGATTTACAATTCTAAACTTTATTTGTGGTATCAATTTAAAATTTGAATTGTTTTTTTTTTAACATATCAATTTACACTTTTTATTATATTATGATTGGATAAATATAATGTGAGACTTATAATTTTATCTATTAAAATTTTTATACACTTTTATAAACGAAGCAATTTAAACACTCAATTAAAATTTTCTTTCAAGTTCATACATTAAATCTAATCGTTCATTTTATTAATTTGACATTTAAAGAAGTTACTTAAGTGTAAAATTCAAACGCATGGACGATTTATGTAATTTTAATAAAGGGTCTAAATTGTTTCACTTAAAAACTAGTTTCAATTGAAAAAATTATATGGTTCATACGGTATATTTTTTAAACTAAGTCTGGAGAATGGTGTTAATTGATATTTTTATAAAAGTTTAGAATTTAAGTTGATATAATTATTAGTTCGAGATTTAAATTGATACAACAAATCTCCAAAATTTAAACTTTCCCACCTTAATTTATATACAGACCAATTCAGAAAGAGAATTTGAATTTTAAACTTCTTAATTGAAAATAAATAATCTTATCAGAAGATGACGGAGAATATATTGAAATAAAAGTGAACGAAGGGATTTTTTTTTTTTTTTTTTTTTTTATAAGAACAAAGGGAAAATAAATATCTTGATTGTGGGGCTCGTATCGTAGTGACAAATGTTATATGTTTTCGGACAGCTGGTTGAGAATAGATATATACCGAACAGTCTGCATTTAATTGAATTAAATGTACGTAGTGAATATAATTAATATCCCAAATAGTACTTTGAAATGACATGAAACATATTGAATATTTTCAATTAAAAAAACAAATAATAATTTTTTTTGAAAGAAAATATTTTTTTCTGAAAAAACAAACAAATAATAATTTTTTTTTTTTAAAAAAGATATCTTCCTAAAGTTTAACTTATCATCAGAAGTAACAAATTGCAATATGGTGCAAATTCTCTTTCCAGTTATTTGCATTTTTATTTATTTATTTATTTTTTTTTTGTTTTAGTTTTTTCTTCCATGTTTTCGTCTTTGTAATTTTATTTTTTTTTTCCTCATTTTAAATAAACTCAACCGTTTTCTATTATTCTCATTTATTTGGCAAGTCATTCTCTTTCGAAGCATGTTTTACTAGAGGAATTTTTTTTTTTGTGCGGACGATTTTTTTTAACACAATTAAAAACGTCAATAGATCTAATTTCTGTCGACGTACTTTATCGTGTGTGGACACGACAGTTTAGTTAATGAAAAGTTGTGTGTGGATAGAAAATTGAGTGGGAACTTAATGGAACACATTACTGAAGGTAAGGCCGACGCCTTTTTTAGTTTTTTGCCGACATATGTTGCATGGGCAGAAAGTTTGAGCATCTGTCGATATCATGTGTGTGAGCAAAAATCTTTTAAATCCACACATTTAGACTTTTACCAACGTACGTTGCGTGGGTAAAAACTCCAAGTATCTGCTGACGCATTATGCGTAGGCAAAAACCTCTAAATCGAAATATTTAGACACCTGCCAAAACAAGTTTTTGCCCATGCAACTTGCTTGGGGAAAAGTTATTTTAAAATCTTACCCGCTTTTTTCCCCACACTTTTCCCCCTCTTTCTTTATTAACCTCTTTTTTAATTTTCCTTCCCCCTCCTCCTCTTTTCCATTTTTCCTCTCAAAGCTTTACTCTCTCTCTCAATTTTTTGCTCTCTCAGCATTGTTATGGTCTTCGCTGTGTTGGGAAAAACCTCCCACTTCTACCGTAGGAATAAACAGAAAATAACAGAAAAATTAAAGGAAAACATAAAATCTGGAAACATAAGAATTAACGAGAAAAACTTCCAACTCGAAGAAAAACCACGAACTAAGAAAAAATTCACTATGTGAAAAATTGCTACAATCACACAGAAATAATCTTCTCCCCCGATCTCACTTACATGTGCACTCTCTCAAAATTTTTATACTACTTACACCTTTTTCTCACTCTCAAATTAGAGAATACAAAAGAAATTTAACGAGAGTTAGCGCACTAAACTTAAAGTGTTTCTAACTGAGACGACTTGAAATTAGAGGCATATGCTTTTTTTATAGGCTTGGAGTTCATCCCATTCTTCAATTTAACCGATGTCGGACAACTACACTTTGCCAAAAAATCTAACACGCTGATAAGCCCAGACACAGACACACACACTCTCTCTCCCTTTCTCTCCCTCATTGTCAATTTTTAGCTCTCTCAGCATTGTTGCGGCCTCCACTCAGCCCAGACGCCGTCATTGATCATTGCTTCACCGCCACTATTGATTTTGAACAATGGGCAAAAACCCATGCCTTGGTTCTTGCATTCTTGGAGTCTTGA

mRNA sequence

ATGAAGAAAGTTCTTGCAGTCACAGTTGTTTGTCTTTTCGTGGTGACTATGGCGGCCCTTCTCAGCAGCGCTCGTCTTGCAGAGGCGGTGAATTGCAGCCCTTTGGAGCTGAGCTCGTGTGCCGGGGCAATCACGTCGTTGTCGAACCCATCGGCTACTTGCTGCACTCTCTCAGCATTGTTGCGGCCTCCACTCAGCCCAGACGCCGTCATTGATCATTGCTTCACCGCCACTATTGATTTTGAACAATGGGCAAAAACCCATGCCTTGGTTCTTGCATTCTTGGAGTCTTGA

Coding sequence (CDS)

ATGAAGAAAGTTCTTGCAGTCACAGTTGTTTGTCTTTTCGTGGTGACTATGGCGGCCCTTCTCAGCAGCGCTCGTCTTGCAGAGGCGGTGAATTGCAGCCCTTTGGAGCTGAGCTCGTGTGCCGGGGCAATCACGTCGTTGTCGAACCCATCGGCTACTTGCTGCACTCTCTCAGCATTGTTGCGGCCTCCACTCAGCCCAGACGCCGTCATTGATCATTGCTTCACCGCCACTATTGATTTTGAACAATGGGCAAAAACCCATGCCTTGGTTCTTGCATTCTTGGAGTCTTGA

Protein sequence

MKKVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCTLSALLRPPLSPDAVIDHCFTATIDFEQWAKTHALVLAFLES
Homology
[Close]
BLAST of HG10002714 vs. NCBI nr
Match: XP_038897809.1 (non-specific lipid-transfer protein 2-like [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 1  MKKVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCT 57
          MKKV++V  VCLF+  MAALLS AR+AEAVNC+PLEL+SCAGAI+S SNPS TCC+
Sbjct: 1  MKKVVSVRAVCLFIAAMAALLSVARVAEAVNCNPLELNSCAGAISSSSNPSRTCCS 56

[Close]
BLAST of HG10002714 vs. NCBI nr
Match: XP_022955426.1 (non-specific lipid-transfer protein 2-like [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 3  KVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCC 56
          K   +T+  LF+  M ALLS AR+AEAVNCSP+ELSSCAGAITS S PS+TCC
Sbjct: 2  KKFPITIAFLFMAVMVALLSGARVAEAVNCSPMELSSCAGAITSSSTPSSTCC 54

[Close]
BLAST of HG10002714 vs. NCBI nr
Match: KAG6581748.1 (hypothetical protein SDJN03_21750, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 3  KVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCC 56
          K   +T+  LF+  M ALLS AR+AEAVNCSP+ELSSCAGAITS S PS+TCC
Sbjct: 2  KKFPITIAFLFMAVMVALLSGARVAEAVNCSPMELSSCAGAITSSSTPSSTCC 54

[Close]
BLAST of HG10002714 vs. NCBI nr
Match: XP_022143278.1 (non-specific lipid-transfer protein 2-like [Momordica charantia])

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-05
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 3  KVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCTLSALLR 62
          K L +T + L VV + ALL+ A +AEAV CSPL+LSSCAGAI+S + PSA+CC+     R
Sbjct: 2  KTLPITGLWLLVVAIMALLTGAHVAEAVTCSPLQLSSCAGAISSSTRPSASCCSKLREQR 61

Query: 63 PPL 66
          P L
Sbjct: 62 PCL 64

[Close]
BLAST of HG10002714 vs. NCBI nr
Match: XP_038904866.1 (non-specific lipid-transfer protein 2-like [Benincasa hispida])

HSP 1 Score: 53.9 bits (128), Expect = 8.9e-04
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 3  KVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCT 57
          K L+ T + L VV MAALL+ ARLAEAV CS +ELS C GA TS + PSA CC+
Sbjct: 2  KNLSFTSLHLLVVAMAALLTGARLAEAVTCSTMELSPCIGAFTSTAPPSAACCS 55

[Close]
BLAST of HG10002714 vs. ExPASy Swiss-Prot
Match: Q43681 (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 0 

Query: 1  MKKVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCTLSAL 60
          MK  + ++VVC  VV    L+    +AEAV C+P ELSSC  AIT  S PS+TCC+   +
Sbjct: 3  MKMKMKMSVVCAVVVVALFLIDVGPVAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKV 62

Query: 61 LRPPL 66
            P L
Sbjct: 63 QEPCL 67

[Close]
BLAST of HG10002714 vs. ExPASy TrEMBL
Match: A0A6J1GTR0 (non-specific lipid-transfer protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111457455 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.4e-08
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 3  KVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCC 56
          K   +T+  LF+  M ALLS AR+AEAVNCSP+ELSSCAGAITS S PS+TCC
Sbjct: 2  KKFPITIAFLFMAVMVALLSGARVAEAVNCSPMELSSCAGAITSSSTPSSTCC 54

[Close]
BLAST of HG10002714 vs. ExPASy TrEMBL
Match: A0A6J1CQB8 (non-specific lipid-transfer protein 2-like OS=Momordica charantia OX=3673 GN=LOC111013188 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 3  KVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCTLSALLR 62
          K L +T + L VV + ALL+ A +AEAV CSPL+LSSCAGAI+S + PSA+CC+     R
Sbjct: 2  KTLPITGLWLLVVAIMALLTGAHVAEAVTCSPLQLSSCAGAISSSTRPSASCCSKLREQR 61

Query: 63 PPL 66
          P L
Sbjct: 62 PCL 64

[Close]
BLAST of HG10002714 vs. ExPASy TrEMBL
Match: A0A4S4CYQ9 (AAI domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017064 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 0 

Query: 9  VVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCTLSALLRPPL 66
          VV + V+ MA LL  A +AEAV CSPLELS C GAITS   PS TCC      RP L
Sbjct: 30 VVVVMVIVMAVLLGEASVAEAVTCSPLELSPCVGAITSSQPPSRTCCDKVREQRPCL 86

[Close]
BLAST of HG10002714 vs. TAIR 10
Match: AT3G18280.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 0 

Query: 4  VLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCTLSALLRP 63
          ++  T+V LF +    L+  A  AEAV CSP++LS CA AITS S PSA CC      RP
Sbjct: 3  MIKTTMVSLFALAAVLLMILAPAAEAVTCSPMQLSPCATAITSSSPPSALCCAKLKEQRP 62

Query: 64 PL 66
           L
Sbjct: 63 CL 64

[Close]
BLAST of HG10002714 vs. TAIR 10
Match: AT1G48750.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 1  MKKVLAVTVVCLFVVTMAALLSSARLAEAVNCSPLELSSCAGAITSLSNPSATCCT 57
          M KV+ V+V+ L     A LL +  +AE V CSP++L+SCA A+TS S PS  CCT
Sbjct: 1  MVKVMWVSVLAL---AAAILLLTVPVAEGVTCSPMQLASCAAAMTSSSPPSEACCT 53

The following BLAST results are available for this feature:
BLAST of HG10002714 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038897809.11.3e-1073.21non-specific lipid-transfer protein 2-like [Benincasa hispida][more]
XP_022955426.11.3e-0767.92non-specific lipid-transfer protein 2-like [Cucurbita moschata][more]
KAG6581748.11.3e-0767.92hypothetical protein SDJN03_21750, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022143278.18.0e-0555.56non-specific lipid-transfer protein 2-like [Momordica charantia][more]
XP_038904866.18.9e-0461.11non-specific lipid-transfer protein 2-like [Benincasa hispida][more]
BLAST of HG10002714 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q436811.1e-0446.15Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 ... [more]
BLAST of HG10002714 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GTR06.4e-0867.92non-specific lipid-transfer protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1CQB83.9e-0555.56non-specific lipid-transfer protein 2-like OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A4S4CYQ94.3e-0457.89AAI domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TE... [more]
BLAST of HG10002714 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G18280.13.8e-0548.39Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT1G48750.11.9e-0450.00Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002714.1HG10002714.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport