HG10002521 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002521
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	C2H2-type domain-containing protein
Location	Chr11: 7816842 .. 7818811 (-)
RNA-Seq Expression	HG10002521
Synteny	HG10002521

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTTCTTCTTCTTCTCTTGAATCTTTGTTTCGATAAATATGTTCCATTAGATTTGAGTGTTTGTTCGTTTCTTTGAATCTGGATCATAATCTTATTAATGTTATGACGTCAAACCAACTGACAAGTGACAACCCCATATCCAATCATCATTTTTCCTGCTTGTTTTCTATTCTAGGTTATAATGCACTTGATATGCTGTTGCGTTGACCTAGATTGATAGGAAACTCATTGGAGTTTGATTAATTTTGGTCTTCTTTTTCCCTTTAAGTCGAGGCTTGAGTCCATAGATCATTTTCGTGGATCATTTGTTCTAGGGTTTGGTAGGATTGGTAGTAGAACGTGTTATTATGTTCTAATCGACATGGGTTTGTTCACTGGAAAATGCTCAAGCCTTAATTCTAGACGATAGTGAACATATACTGCAAACTATTGTGGCCAATCTACTTGAGATATTAATTGGAAACTATGATACAATATTTTTAATGTGTAGCTATAATATTATCTTGAGAAATTTTCTTGTTGCAAGAATTGCTGTATAGTTATATCCAAATTCATAACTTTATTTGTAAAACTTCCGAGGAGGATTTTTCTTTTCTTTTACTCCTTTGGATACCTAATTTGTCTGTTGAGCAGTTAACTTTTAATAAGCAATAGAGAAGTATATACCACAAGAAAGGGAGATAACAACCTAGAGGACAGGATAAAGGGATCCCTGCCTTAAAAGAGGCTAGAGGAATAAGAGGAATATTAAAAAAGGAGAGTCTTCCCATTGTTAATAATCATTAGAAGACTAACAAAAAGAAAATCGAGTGATTAAAACACTAACCAGAGGCTGACAACTGCACACAATCAAAAGAAGTAATCTTATCTTCAAAGATTATTCCCTTTGAAACTTCAGCCCCTTGGAGCTTCTATCAGCCAATTATCAACATTTTTAGGCAGATAAAGGGATATCCATAGCTCATTTAAAATGTATATCTAACCTCAATAAGCAAAGTGGCAATGGGGAAAAAAAATGATTCACATATGCACCATCTATAAGACATAAGCAGCAAACGGGGAATAAGACCCAATTCTGTTTTTTTTAGCAACCTGTTTTCGGTATTAAGACTTCCGTTTACCATCTTGGGTGTTAATAATGTTGAGTTCAAATGTTTACTTTGTGTTGTTAATAAGTTTTGTATAAATTTTATGTTTAGCAAGTGGATTGATCTCTTGCTTTTGAAGAAGTGGAATACCTAGTTTTTCATTCTTCTCCATGTGTTCTTTAATCTGTGTACATCACTCTTCATACACGTTACTACTAGAATCCATGTCTATCAAACTTTTCTTGTAGGATTTTGTGGATTGATCTTTTTCTTGGCAAGTGGGAGACTAAATATTGAATTAGACATAGGGGAAATTTTTCTAGTACTACGGGAGTACCATACTCCCTGTGTTCACACTATAAATCTGTCTCTACAAATATTAGTGGACTACACATTAATGTCAGTGGGTCCCACCAGGGTGTTGACGTGGTATACAATAAATGGAGGGAGTATGAAAAATTTTCCATACTCGCATAGTATAAGAAATTTTCTCTAGACATAGAAGAGAGTGGAATAATGATAGGAAATAAAGATGAATTCCTCTATTTTGAAGTTTCCGAGAATAATACTTCATGCATTATGATGATCTTAAGGATTTCTCGCTTTCGGTACTTGAAAGTATATTTTATTTTTTCCCCCCACGACCATGTATTTGATCATCTATTTCTTACCTCAGGTACAGCTTGCAAATCAGAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

mRNA sequence

ATGACCCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTACAGCTTGCAAATCAGAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

Coding sequence (CDS)

ATGACCCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCGAAAGGCTCACAGCTTGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTACAGCTTGCAAATCAGAACCAGTTGGGTGATCATTATGCCTCCAAACATCCAAAGGAAAAGCCACCATCAGAATCTGGCTGA

Protein sequence

MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPKEKPPSESG

Homology

[Close]

BLAST of HG10002521 vs. NCBI nr
Match: TYK16504.1 (zinc finger protein 706-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of HG10002521 vs. NCBI nr
Match: KAG6600413.1 (hypothetical protein SDJN03_05646, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031072.1 hypothetical protein SDJN02_05111, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQ EARAVALKVICPICKVQLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of HG10002521 vs. NCBI nr
Match: KAG7015122.1 (hypothetical protein SDJN02_22755 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 7.6e-26
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAEKNQK KGSQ EARAVALKVICPICKVQLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of HG10002521 vs. NCBI nr
Match: KAG6577120.1 (putative aspartic protease, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 7.6e-26
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1   MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
           MTRGKQKIEAQ+RNAEKNQK KGSQ EARAVALKVICPICKVQLAN NQLGDHYASKHPK
Sbjct: 137 MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 196

Query: 61  EKPPSESG 69
           EKPPSESG
Sbjct: 197 EKPPSESG 204

[Close]

BLAST of HG10002521 vs. NCBI nr
Match: EEF42492.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 126.3 bits (316), Expect = 9.9e-26
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of HG10002521 vs. ExPASy Swiss-Prot
Match: Q5ZMM5 (Zinc finger protein 706 OS=Gallus gallus OX=9031 GN=ZNF706 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPK----GSQLEARAVALKVICPICKVQLANQNQLGDHYAS 60
          M RG+QKI++Q++NA+K  + K      Q  A   AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAEQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of HG10002521 vs. ExPASy Swiss-Prot
Match: Q9Y5V0 (Zinc finger protein 706 OS=Homo sapiens OX=9606 GN=ZNF706 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEK---NQKPKGSQLEARA-VALKVICPICKVQLANQNQLGDHYAS 60
          M RG+QKI++Q++NA+K    +K +G   +A A  AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of HG10002521 vs. ExPASy Swiss-Prot
Match: Q9D115 (Zinc finger protein 706 OS=Mus musculus OX=10090 GN=Znf706 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEK---NQKPKGSQLEARA-VALKVICPICKVQLANQNQLGDHYAS 60
          M RG+QKI++Q++NA+K    +K +G   +A A  AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of HG10002521 vs. ExPASy TrEMBL
Match: A0A5D3CZW8 (Zinc finger protein 706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003120 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.1e-28
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of HG10002521 vs. ExPASy TrEMBL
Match: B9S1M3 (C2H2-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHYASKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of HG10002521 vs. ExPASy TrEMBL
Match: D7TFG3 (C2H2-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-26
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY+SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of HG10002521 vs. ExPASy TrEMBL
Match: V4V2J0 (C2H2-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10003066mg PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ+EARAVALKV CPICK QLANQNQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

[Close]

BLAST of HG10002521 vs. ExPASy TrEMBL
Match: A0A2H5Q785 (C2H2-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_202080 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYASKHPK 60
          MTRGKQKIEAQKRNAE+NQKPKGSQ+EARAVALKV CPICK QLANQNQ+GDHYASKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKGSQIEARAVALKVSCPICKAQLANQNQIGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPP+ES
Sbjct: 61 EKPPTES 67

The following BLAST results are available for this feature:

BLAST of HG10002521 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16504.1	1.1e-27	98.53	zinc finger protein 706-like protein [Cucumis melo var. makuwa]	[more]
KAG6600413.1	2.0e-26	97.01	hypothetical protein SDJN03_05646, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015122.1	7.6e-26	94.12	hypothetical protein SDJN02_22755 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6577120.1	7.6e-26	94.12	putative aspartic protease, partial [Cucurbita argyrosperma subsp. sororia]	[more]
EEF42492.1	9.9e-26	94.03	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of HG10002521 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZMM5	2.9e-04	37.14	Zinc finger protein 706 OS=Gallus gallus OX=9031 GN=ZNF706 PE=3 SV=1	[more]
Q9Y5V0	2.9e-04	38.57	Zinc finger protein 706 OS=Homo sapiens OX=9606 GN=ZNF706 PE=1 SV=1	[more]
Q9D115	2.9e-04	38.57	Zinc finger protein 706 OS=Mus musculus OX=10090 GN=Znf706 PE=1 SV=1	[more]

BLAST of HG10002521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZW8	5.1e-28	98.53	Zinc finger protein 706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
B9S1M3	4.8e-26	94.03	C2H2-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 ...	[more]
D7TFG3	6.2e-26	89.71	C2H2-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00...	[more]
V4V2J0	1.8e-25	91.04	C2H2-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v1000...	[more]
A0A2H5Q785	1.8e-25	91.04	C2H2-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_202080 PE=...	[more]

BLAST of HG10002521 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF12874	zf-met	coord: 37..57 e-value: 3.1E-5 score: 24.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR21213	GEO09665P1-RELATED	coord: 1..66
None	No IPR available	PANTHER	PTHR21213:SF0	GEO09665P1-RELATED	coord: 1..66
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..64
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 1..28 e-value: 1.6E-5 score: 25.7
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..66 e-value: 2.0E-18 score: 68.5
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 35..63 score: 8.600363

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002521.1	HG10002521.1	mRNA