HG10002243 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002243
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cytochrome c oxidase subunit 5b-1, mitochondrial
Location	Chr11: 4813457 .. 4818159 (-)
RNA-Seq Expression	HG10002243
Synteny	HG10002243

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAGGAGATTGCTCTGTTTGCAGCTCAATGCCCTAAAACGTCTTCCTTCATCATCGACGGCAGCATCTGCTGCTCCATCGGTATCCATTTCCACAGCTTCACGACTTGCTGTTGCTGCTTCATCTCATGTTTCTCCCTCACCTTACGTTTCGCTCTTCACTCGCCATTTCAGTGCCGAGGCTGGTAGATCTTATTCTCCTATCTGGATTTCATATTCGTAACTCATGGATTATTACTTGTTTTTCATTCGGTCACAGCGTGTATGGACATGGATCTATAGTATGAGTGCGAACGTGGATTTGGTCTCGTGTGATTAATATTTTGATTTTTGTAAATTAGCTGTTGATGCTGGTCTGAAAAAGAATGTTGAGGATGTAATGCCGATTGCAACCGGACACGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGTGATTTTTCTTCTGTTTCGATGTGTGATTTCGTTTTTCCGATTTGATGTTAAAAGAAAAAACAAAAACAGTGGCATACGGACTGAAAATAGGTAAAAGATGCTTTCAATCAATTGCCGAAAAAGGATATCAGGTGGATTATTTGCAGTTATACTATCCCTTAATTGATTCATTCGTTTTCATGAGAAGGTCAATATCAAACCTCAACGTACATCGTTCTATTTATATTTGTGGACGGTCATTTATCAAACAAATGTTTTTTGCTGTTCTTTGAATTGGTTTTAGAAAAGGTCGAGTGTATTTTCGACAAAGAGAAGTTTCTGTATGAGGCCTGATGACGTTAGCTCATTCTATTTCAAATACGTTGATAGATTTTATAGAGGAATAGGTGTAATAATCAACGAATAAAAGAGAAGCAGCCTACAACATATGAACACGTGTGCTAAAAGGTTCAACAGAATGATTGAGCAAACATTAAAAGTGCACAAGCTGAGTCAACAACCTGCTGGGTCTGTTAGGCTGAAGGTTCTGGAATGATAGTTGCCATACGATACGACCCAAAACCTTCCAATCAACATGTTGTATTTCGTGGGCTTCTTAAAATTTCTGAGGCAATCCTCATACTGGATTGTGTCTGGTTTATGTAAATATTTTAGTTGGTTGGCATCTGAAGTATTTTTCATTATGAAAGTGAGTCTCATTTTAATGGGTTTTATGTTTGCAGGGAAGAGACATCCTTGATATAAACAACCCTGTAGGTCCTTTTGGCACTAAGGTTGGTATATTTTTCTGTTTACAGTTAATTTTATTTTTTTTCACATTTTGGGTTGTGTCATATGCCGCCCAAGGAGGCCCTTTTTTCTCCCTTTCCTCGTACTCCATATTGATGTTTTATTTGTTATAAATAAACATGAGATGTTGAAATACTTTTCTATGTTGTGACTTGTGAGCCTGTGTGTGTGTGTGTTTTCCGATAATTTACATGCCAAATTACTATTGAAGTCTGAAGGTTTTTGGGTTACTCAAAAAGGTATGTATGCTATCTTTAGTTTGGATATATCTGGAAGAAGATAAACTGATAAAAGATAGAACAACTTCTGGATGTATGTAGTTCCAGGTTTTGTTGGGCAGTTTAGTCAGAGAGAAATAACGTCACTTTCTTAGACAAATTTGTAGTTTGAGTTTTTCGGGTGGTAGTTTTTTTCCACTTGTGTTTTCCATGTATAGCCTCATTGGTTGAGGAGGAACTTGGACTATGTTTAGCTCTTTTCACTGTAGATGGTCTGTCTATTTTCTTTTTCCTTTTTTTCCCCCTTAATTTTTCTCTTGATTAGAAACAAATTTCATTTATGAAAGAAATATACAGAAGTTAACTAAAGGCTCCCAGACTTTTCTGTGATTGAAGATAAGCATTAGTTACAAAGAAAGAGAATTACCATGAGAGGCTCAAGAAAAAGCCACAAATTTCACAAGGACCACATACATCTTTTTCTACAAGACTCCAGCTTTGGAAATTCTACTGTTTTTTTCCAACCACGCCTTCCAAGAAAAGGGAAGAATACCATTGTTACGTAGGTTTCTTTTCTTGTCTTGGATCTCTTACCTGTCAACATTTGAGGAATAAAATCCTTAGTTATTCAGCCAAACAAAACTGAAGTCAGAGTTTGAACAGCTTACCCATAGCCACTTCGAGAAATAGCTGTTCAAGAAAACTTGTTCAGCAGGTTCTTCACTCTTTTTATATAAAGTAGGCGTTTTAGGCAAAATATAGGGGAGAGAGTGAGTTCTTTGAGCAGCATCATTTGTGTTGATTCTTTGAGGGAAAATTGACCGAGGGAACACCTTCCATTTATAGGTAGCTTGCTGTACGAAATATTTTGTATAAATCCAGGAAAATGTAGGTTCTTGAAAACCCAAAGTACGATTTAGGAAGCTCACTAAAAAGCCCTAGAAGAAGTGAGATTTTGAATTCCTGAAGGCTGGTTAAGGAGGCATGAATTGAATCTAACATGCTACCAAACATAGCCCGCTCACCAATTTCTTCTCTATCTATCATTTTTATTTTGAAAATCAACTTTGGACAAAGAGCATCCTTGCCCAACAAGCCTTGCCAATGCTCCTTTCTAGTGAGTAACCTCATATAGCCATATAAACATCTCATTGAAAGAATAGGAGCTTTCTTTTGTGAATTGTCCAGTGAACTTGTGACTCGTTACCATATTGGCTAGCAACTACCTTGGCCTGAAGAGAACTTGTTAGGAACCAAAGTAGTATGGGCTACCTTTGTCCCACATCGGTTAGAATGGGATGACCAATGTGGTACTTAAGTGGCTTGGCTCTCCCACCTCAATAGCTGGCTTTTAGGGTGTGGTTCTCCAAGGTGCTTAAGCACCTAACAGAACTATGTGCCCAAGGAATATTATGTTGTGAATTGTCTGGTGAAGTCCTTTCCATGTTTGTTAGCAATCACGATATGCTGAAGAGAGCTAGGTTCCCTAGGATATCTCCATAACCATTTGCAAAGAAGAAAAAAATGTATGTTTGGTATTCCAAATGTTTAGACATCCGTTCTCAAGAGGGGAGAGACCACAGACGATAATTCATCTAACATGGGGAGAAACCGTTTTGCCACCTCAAAAAAGATATGGCTGATGTATTTCCTTAAAATTCTTTAATAGGGATATTGAAAAATGAAAAAAAAGTACAAGAGGAAGTTGGAAAGAATTTTCATTTTCTTCGTTAGAGGATATTTCATTCTCTCTCCTTCTATGCAAAAAAAATTTATGAGTTAAGTGGCCGTTCATACTATCTGGATACACCATTGAAGCTTGAGGTGACCAGGAACTCTTAGACAAATTGACAAATTACTGTGGATGTAAATGCAGCCCTCGCTTTCTTCATCCTGACGACAGAGAACACACCAACTTGGGAGAGAGTAATTGTAGGATAGGGAATTTTCTTCCTTCCACAACATTTTATTATTTTAATTCTCATTAGAAATGGTGTTGTTAAAGCATATAGGGGACAATATATTGAAAGCAAACCTTTAGTCCGTTGCTGATATGAGCATACATAGCTCAAGTGGTCAGACATTACTCGTTAATGCTTCTTCTTATGGGTGTATGTTCAAATCTCCTCCTTGTAGCATAATATTTATGGCCCCTTGGTACTAAGTGAGGATTTTTACTGCAGTTCCCATTTTATTATTATTTTGTCATTTATGTTTTGTTTGTATTGGGGTGTTTATTTTGCATTCTATGACTTTGAATGTTGATGCTTTTATGTGGTGGTTATTGATTTCGTGATTAGTTTATTTATACAAGTGTTCACTTTCAAATTCAATGAAGCTCGTAAATTGTTTTGCTCTTGATGCACATCGAAATACCGTGAGGATGTGCCTGAAAGAATAAGTTTGGTTGCATGAATTATTTCCTTGGCTGAAGTCTAAATACTTTCTTATGTTTTTAGGAAGCTCCTGCTGTTATTAAGTCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGGTAAGTACTTGCAATCTCTCTTTTATCCATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCATTTTTGTGCAAGTCTGACAAAAATTTGCATAAGTAAATTTTGTGCTCTTCCTCTACACGAGAATTTCCAACTTATTTCTGTTGTGTGCTTTTGAATTTTGTAGAGGATGAGCACGATGTTGTCTGGTTTCGGCTGAAGAAAGGCGAGCCACATGAATGCTCTGTGTGCACGCAGTATTTTGTGGTGAGGATTTATTTTAAATTATTACGTTATATTGCCATGATATGGAATGCCCCCAAAACCTAACCATAAAAAAAATGGTCTTTGTGCACGATAATCGATAACACATATGAATTACTTATGTTCCTCCTTTGTTCGTGGTGGGTCAATTACATTCTTTGAGTTATTAGTATTATTATTTTGATTGCAACAAGTAGAGGTGGAGGATATGAACCTATGACCTCTAGGTCGAGGGCAAATTCCTTAGCCAATTGAGCTATATGCTCAGGTTGGTTCTTCTAGTTATGATTAGTATCAAAGTTTGAATGTTAGTTCTCTCTCCAATTGTCCCACTTCTTGAATCTGGGGTAAAGATATTCGTGTCTTAATTAGAAATTAGTTAGGAGTGCCAAATTTTTCTAACTTTAAGTTGTGTTCTCAGCTGGAAGTGGTGGGACCTGGAGGATCACCAGATGGTTATGGAGACGATGATCACCATCATTGA

mRNA sequence

ATGTGGAGGAGATTGCTCTGTTTGCAGCTCAATGCCCTAAAACGTCTTCCTTCATCATCGACGGCAGCATCTGCTGCTCCATCGGTATCCATTTCCACAGCTTCACGACTTGCTGTTGCTGCTTCATCTCATGTTTCTCCCTCACCTTACGTTTCGCTCTTCACTCGCCATTTCAGTGCCGAGGCTGCTGTTGATGCTGGTCTGAAAAAGAATGTTGAGGATGTAATGCCGATTGCAACCGGACACGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGGAAGAGACATCCTTGATATAAACAACCCTGTAGGTCCTTTTGGCACTAAGGAAGCTCCTGCTGTTATTAAGTCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGAGGATGAGCACGATGTTGTCTGGTTTCGGCTGAAGAAAGGCGAGCCACATGAATGCTCTGTGTGCACGCAGTATTTTGTGCTGGAAGTGGTGGGACCTGGAGGATCACCAGATGGTTATGGAGACGATGATCACCATCATTGA

Coding sequence (CDS)

ATGTGGAGGAGATTGCTCTGTTTGCAGCTCAATGCCCTAAAACGTCTTCCTTCATCATCGACGGCAGCATCTGCTGCTCCATCGGTATCCATTTCCACAGCTTCACGACTTGCTGTTGCTGCTTCATCTCATGTTTCTCCCTCACCTTACGTTTCGCTCTTCACTCGCCATTTCAGTGCCGAGGCTGCTGTTGATGCTGGTCTGAAAAAGAATGTTGAGGATGTAATGCCGATTGCAACCGGACACGAGCGTGAAGAGCTTGAAGCCGCGCTTGAGGGAAGAGACATCCTTGATATAAACAACCCTGTAGGTCCTTTTGGCACTAAGGAAGCTCCTGCTGTTATTAAGTCATATTATGACGAAAGATTAGTTGGGTGCCCTGGAGGTGAAGGCGAGGATGAGCACGATGTTGTCTGGTTTCGGCTGAAGAAAGGCGAGCCACATGAATGCTCTGTGTGCACGCAGTATTTTGTGCTGGAAGTGGTGGGACCTGGAGGATCACCAGATGGTTATGGAGACGATGATCACCATCATTGA

Protein sequence

MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSAEAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYGDDDHHH

Homology

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BLAST of HG10002243 vs. NCBI nr
Match: XP_038878141.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 340.5 bits (872), Expect = 8.7e-90
Identity = 169/178 (94.94%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWRRLL LQLNALKRLPSSST    APSVSISTASRLAVAASS+VSPSPY+SLF RHFSA
Sbjct: 1   MWRRLLSLQLNALKRLPSSST----APSVSISTASRLAVAASSYVSPSPYISLFARHFSA 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYGDDDHHH 179
           ERLVGCPGGEGEDEHDVVWFRLKKGEPHEC VCTQYFVLEVVGPGGSPDGYGDDDHHH
Sbjct: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 174

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BLAST of HG10002243 vs. NCBI nr
Match: XP_004152218.1 (cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis sativus] >KGN52866.1 hypothetical protein Csa_014612 [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 6.3e-88
Identity = 167/179 (93.30%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWRRLL L+L+ALKRLPSSSTAASAAPS SISTASRLAVAASS VSPSPYVSLF RHFSA
Sbjct: 1   MWRRLLSLRLSALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPYVSLFARHFSA 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG-DDDHHH 179
           ER+VGCPGGEG+DEHDVVWFRLKKGEPHEC VCTQYF LEVVGPGGSPDGYG DDDHHH
Sbjct: 121 ERIVGCPGGEGDDEHDVVWFRLKKGEPHECPVCTQYFTLEVVGPGGSPDGYGNDDDHHH 179

[Close]

BLAST of HG10002243 vs. NCBI nr
Match: XP_008454275.1 (PREDICTED: cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis melo] >KAA0044422.1 cytochrome c oxidase subunit 5b-1 [Cucumis melo var. makuwa] >TYK29549.1 cytochrome c oxidase subunit 5b-1 [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 4.5e-86
Identity = 163/178 (91.57%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWRRLL L LNALKRLPSSSTAASAAPS SISTASRLAVAASS VSPSP VSLF RHFSA
Sbjct: 1   MWRRLLSLHLNALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPCVSLFARHFSA 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAAVDAGL+KNVEDVMPIATGHEREELEA LEGRDILDINNPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLRKNVEDVMPIATGHEREELEATLEGRDILDINNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYGDDDHHH 179
           ER+VGCPGGEGEDEHDV+WFRL+KGEP EC VCTQYF LEVVGPGGSPDGYGDDD HH
Sbjct: 121 ERIVGCPGGEGEDEHDVIWFRLRKGEPLECPVCTQYFALEVVGPGGSPDGYGDDDDHH 178

[Close]

BLAST of HG10002243 vs. NCBI nr
Match: XP_022998034.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 295.0 bits (754), Expect = 4.2e-76
Identity = 151/179 (84.36%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWR+LL  QL ALK  PS+S AAS AP   IS ASRL VAASSHV PSP+VS + RH+  
Sbjct: 1   MWRKLLFSQLRALKSFPSTSAAAS-APLGFISRASRLTVAASSHVFPSPHVSFYARHYGV 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAA DAGLKK VEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYD
Sbjct: 61  EAA-DAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG-DDDHHH 179
           ERLVGCPGGEGEDEHDVVWFRLKKGEPHEC VCTQYFVLEVVGPGGSPDGYG DDDHHH
Sbjct: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGNDDDHHH 177

[Close]

BLAST of HG10002243 vs. NCBI nr
Match: XP_023523888.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523889.1 cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 4.2e-76
Identity = 151/179 (84.36%), Postives = 158/179 (88.27%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWR+LL  QL ALK  PS+S AAS AP   IS ASRL VAASSHV PSP+VS + RH+ A
Sbjct: 1   MWRKLLFSQLRALKSFPSTSAAAS-APLGFISRASRLTVAASSHVFPSPHVSFYARHYGA 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAA DAGLKK VEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYD
Sbjct: 61  EAA-DAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG-DDDHHH 179
           ERLVGCPGGEGEDEHDVVWFRLKKGEPHEC VCTQYFVLEVVGPGGSPDGYG +DDHHH
Sbjct: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGNEDDHHH 177

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BLAST of HG10002243 vs. ExPASy Swiss-Prot
Match: Q9LW15 (Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-1 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.5e-52
Identity = 110/185 (59.46%), Postives = 131/185 (70.81%), Query Frame = 0


Query: 1   MWRRLLCLQLNAL-----KRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFT 60
           MWRR++  QL  L        P  S AA+  P      A+R A++ASS V P        
Sbjct: 1   MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIP-------- 60

Query: 61  RHFSAEAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVI 120
           R FS++ +V+    K VEDVMPIATGHE+EELEA LEGR + DI+ P GPFGTKEAPA++
Sbjct: 61  RRFSSD-SVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIV 120

Query: 121 KSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG--D 179
           KSYYD+R+VGCPGGEGEDEHDVVWF L+KG+  EC VCTQYF LEVVGPGG PDG+G  D
Sbjct: 121 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDED 176

[Close]

BLAST of HG10002243 vs. ExPASy Swiss-Prot
Match: Q9SSB8 (Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-2 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.2e-51
Identity = 105/177 (59.32%), Postives = 127/177 (71.75%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSP-YVSLFTRHFS 60
           MWRR++   L ++     S+  + AAPS   +      ++ S+  S  P Y S+F+R   
Sbjct: 1   MWRRIVSSHLKSI-----SAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSR-LI 60

Query: 61  AEAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYY 120
             AA D  +KK VEDVMPIATGHE+EEL+A LEGR + DI+ P GPFGTKEAPAV+KSYY
Sbjct: 61  GSAAADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYY 120

Query: 121 DERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYGDDDH 177
           D R+VGCPGGEGEDEHDVVWF L+KG+  EC VCTQYF LEVVGPGG PDG+GDD H
Sbjct: 121 DMRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171

[Close]

BLAST of HG10002243 vs. ExPASy Swiss-Prot
Match: Q9SSS5 (Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN=At1g52710 PE=3 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-26
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 87  LEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGE 146
           L+    GR +LDI++P  PFGTKE+PAV++SY+D+R +GC GGEGED HDVVWF L KG+
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 147 PHECSVCTQYFVLEVVGPGGSPDGYGDD-DHHH 179
             EC VC+QYF        G PDG+GDD DHHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

[Close]

BLAST of HG10002243 vs. ExPASy Swiss-Prot
Match: P29505 (Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum OX=44689 GN=cxeA PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-07
Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 104 GPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVG 163
           G FGT ++P +++S +  R+V C GG+GE EHD+++  + + +P  C  C Q F L+ + 
Sbjct: 54  GAFGTLKSPVIVESIFHSRIVACEGGDGE-EHDILFHTVAEKKPTICLDCGQVFKLKHIS 113

Query: 164 PGG 167
             G
Sbjct: 114 SEG 115

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BLAST of HG10002243 vs. ExPASy Swiss-Prot
Match: P79010 (Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox4 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.0e-05
Identity = 27/86 (31.40%), Postives = 40/86 (46.51%), Query Frame = 0


Query: 79  ATGHEREELEAALEGRDILDINN-PVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDV 138
           ATG ER EL + L GRD  D+        GT   P ++ S    R +GC G      H++
Sbjct: 72  ATGLERYELLSELSGRDAFDMKPLDASRKGTLTDPIMVTSLDPYRHIGCTGSP-SGSHNL 131

Query: 139 VWFRLKKGEPHECSVCTQYFVLEVVG 164
           +W  + K +   C  C   + L+ +G
Sbjct: 132 IWMTVYKDKLRRCPECGSVYKLKFMG 156

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BLAST of HG10002243 vs. ExPASy TrEMBL
Match: A0A0A0KYD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004280 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.0e-88
Identity = 167/179 (93.30%), Postives = 172/179 (96.09%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWRRLL L+L+ALKRLPSSSTAASAAPS SISTASRLAVAASS VSPSPYVSLF RHFSA
Sbjct: 1   MWRRLLSLRLSALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPYVSLFARHFSA 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG-DDDHHH 179
           ER+VGCPGGEG+DEHDVVWFRLKKGEPHEC VCTQYF LEVVGPGGSPDGYG DDDHHH
Sbjct: 121 ERIVGCPGGEGDDEHDVVWFRLKKGEPHECPVCTQYFTLEVVGPGGSPDGYGNDDDHHH 179

[Close]

BLAST of HG10002243 vs. ExPASy TrEMBL
Match: A0A5A7TM92 (Cytochrome c oxidase subunit 5b-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001540 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86
Identity = 163/178 (91.57%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWRRLL L LNALKRLPSSSTAASAAPS SISTASRLAVAASS VSPSP VSLF RHFSA
Sbjct: 1   MWRRLLSLHLNALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPCVSLFARHFSA 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAAVDAGL+KNVEDVMPIATGHEREELEA LEGRDILDINNPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLRKNVEDVMPIATGHEREELEATLEGRDILDINNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYGDDDHHH 179
           ER+VGCPGGEGEDEHDV+WFRL+KGEP EC VCTQYF LEVVGPGGSPDGYGDDD HH
Sbjct: 121 ERIVGCPGGEGEDEHDVIWFRLRKGEPLECPVCTQYFALEVVGPGGSPDGYGDDDDHH 178

[Close]

BLAST of HG10002243 vs. ExPASy TrEMBL
Match: A0A1S3BYC3 (cytochrome c oxidase subunit 5b-1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494723 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.2e-86
Identity = 163/178 (91.57%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWRRLL L LNALKRLPSSSTAASAAPS SISTASRLAVAASS VSPSP VSLF RHFSA
Sbjct: 1   MWRRLLSLHLNALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPCVSLFARHFSA 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAAVDAGL+KNVEDVMPIATGHEREELEA LEGRDILDINNPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLRKNVEDVMPIATGHEREELEATLEGRDILDINNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYGDDDHHH 179
           ER+VGCPGGEGEDEHDV+WFRL+KGEP EC VCTQYF LEVVGPGGSPDGYGDDD HH
Sbjct: 121 ERIVGCPGGEGEDEHDVIWFRLRKGEPLECPVCTQYFALEVVGPGGSPDGYGDDDDHH 178

[Close]

BLAST of HG10002243 vs. ExPASy TrEMBL
Match: A0A6J1KD83 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111492803 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 151/179 (84.36%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWR+LL  QL ALK  PS+S AAS AP   IS ASRL VAASSHV PSP+VS + RH+  
Sbjct: 1   MWRKLLFSQLRALKSFPSTSAAAS-APLGFISRASRLTVAASSHVFPSPHVSFYARHYGV 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           EAA DAGLKK VEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYD
Sbjct: 61  EAA-DAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG-DDDHHH 179
           ERLVGCPGGEGEDEHDVVWFRLKKGEPHEC VCTQYFVLEVVGPGGSPDGYG DDDHHH
Sbjct: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGNDDDHHH 177

[Close]

BLAST of HG10002243 vs. ExPASy TrEMBL
Match: A0A6J1GC67 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111452829 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.7e-75
Identity = 149/179 (83.24%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFTRHFSA 60
           MWR+ L  QL ALK  PS+S AAS AP   IS ASRL VAASSHV PSP+VS + RH+ A
Sbjct: 1   MWRKFLFSQLRALKSFPSTSAAAS-APLGFISRASRLTVAASSHVFPSPHVSFYARHYGA 60

Query: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYD 120
           E AVDAGLKK VEDVMPIATGHEREELEAALEGRDILDI+NPVGPFGTKE PAVIKSYYD
Sbjct: 61  E-AVDAGLKKKVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEDPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG-DDDHHH 179
           ERLVGCPGGEGEDEHDVVWFRLKKGEPHEC VCTQYFVLEVVGPGGSPDG+G +DDHHH
Sbjct: 121 ERLVGCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGFGNEDDHHH 177

[Close]

BLAST of HG10002243 vs. TAIR 10
Match: AT3G15640.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 204.9 bits (520), Expect = 5.3e-53
Identity = 110/185 (59.46%), Postives = 131/185 (70.81%), Query Frame = 0


Query: 1   MWRRLLCLQLNAL-----KRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFT 60
           MWRR++  QL  L        P  S AA+  P      A+R A++ASS V P        
Sbjct: 1   MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIP-------- 60

Query: 61  RHFSAEAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVI 120
           R FS++ +V+    K VEDVMPIATGHE+EELEA LEGR + DI+ P GPFGTKEAPA++
Sbjct: 61  RRFSSD-SVETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIV 120

Query: 121 KSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG--D 179
           KSYYD+R+VGCPGGEGEDEHDVVWF L+KG+  EC VCTQYF LEVVGPGG PDG+G  D
Sbjct: 121 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDED 176

[Close]

BLAST of HG10002243 vs. TAIR 10
Match: AT3G15640.2 (Rubredoxin-like superfamily protein )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 110/185 (59.46%), Postives = 130/185 (70.27%), Query Frame = 0


Query: 1   MWRRLLCLQLNAL-----KRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSPYVSLFT 60
           MWRR++  QL  L        P  S AA+  P      A+R A++ASS V P        
Sbjct: 1   MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIP-------- 60

Query: 61  RHFSAEAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVI 120
           R FS+++   A   K VEDVMPIATGHE+EELEA LEGR + DI+ P GPFGTKEAPA++
Sbjct: 61  RRFSSDSETPA--TKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIV 120

Query: 121 KSYYDERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYG--D 179
           KSYYD+R+VGCPGGEGEDEHDVVWF L+KG+  EC VCTQYF LEVVGPGG PDG+G  D
Sbjct: 121 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDED 175

[Close]

BLAST of HG10002243 vs. TAIR 10
Match: AT1G80230.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-52
Identity = 105/177 (59.32%), Postives = 127/177 (71.75%), Query Frame = 0


Query: 1   MWRRLLCLQLNALKRLPSSSTAASAAPSVSISTASRLAVAASSHVSPSP-YVSLFTRHFS 60
           MWRR++   L ++     S+  + AAPS   +      ++ S+  S  P Y S+F+R   
Sbjct: 1   MWRRIVSSHLKSI-----SAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSR-LI 60

Query: 61  AEAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYY 120
             AA D  +KK VEDVMPIATGHE+EEL+A LEGR + DI+ P GPFGTKEAPAV+KSYY
Sbjct: 61  GSAAADTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYY 120

Query: 121 DERLVGCPGGEGEDEHDVVWFRLKKGEPHECSVCTQYFVLEVVGPGGSPDGYGDDDH 177
           D R+VGCPGGEGEDEHDVVWF L+KG+  EC VCTQYF LEVVGPGG PDG+GDD H
Sbjct: 121 DMRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171

[Close]

BLAST of HG10002243 vs. TAIR 10
Match: AT1G52710.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-27
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 87  LEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGE 146
           L+    GR +LDI++P  PFGTKE+PAV++SY+D+R +GC GGEGED HDVVWF L KG+
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 147 PHECSVCTQYFVLEVVGPGGSPDGYGDD-DHHH 179
             EC VC+QYF        G PDG+GDD DHHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

The following BLAST results are available for this feature:

BLAST of HG10002243 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878141.1	8.7e-90	94.94	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Benincasa hispida]	[more]
XP_004152218.1	6.3e-88	93.30	cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis sativus] >KGN52866.1 h...	[more]
XP_008454275.1	4.5e-86	91.57	PREDICTED: cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis melo] >KAA0...	[more]
XP_022998034.1	4.2e-76	84.36	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita maxima]	[more]
XP_023523888.1	4.2e-76	84.36	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pep...	[more]

BLAST of HG10002243 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW15	7.5e-52	59.46	Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSB8	2.2e-51	59.32	Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSS5	1.9e-26	59.14	Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]
P29505	4.3e-07	36.51	Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum OX=44689 GN=cxeA PE=1...	[more]
P79010	4.0e-05	31.40	Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of HG10002243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYD4	3.0e-88	93.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004280 PE=4 SV=1	[more]
A0A5A7TM92	2.2e-86	91.57	Cytochrome c oxidase subunit 5b-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BYC3	2.2e-86	91.57	cytochrome c oxidase subunit 5b-1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KD83	2.0e-76	84.36	cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1GC67	1.7e-75	83.24	cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita moschata OX=3...	[more]

BLAST of HG10002243 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15640.1	5.3e-53	59.46	Rubredoxin-like superfamily protein	[more]
AT3G15640.2	1.2e-52	59.46	Rubredoxin-like superfamily protein	[more]
AT1G80230.1	1.6e-52	59.32	Rubredoxin-like superfamily protein	[more]
AT1G52710.1	1.3e-27	59.14	Rubredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002124	Cytochrome c oxidase, subunit Vb	PFAM	PF01215	COX5B	coord: 78..165 e-value: 1.1E-17 score: 64.0
IPR002124	Cytochrome c oxidase, subunit Vb	PANTHER	PTHR10122	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	coord: 19..178
IPR002124	Cytochrome c oxidase, subunit Vb	PROSITE	PS51359	COX5B_2	coord: 67..166 score: 21.507439
IPR036972	Cytochrome c oxidase, subunit Vb superfamily	GENE3D	2.60.11.10	Cytochrome c oxidase, subunit Vb	coord: 69..162 e-value: 6.0E-30 score: 105.0
None	No IPR available	PANTHER	PTHR10122:SF16	SUBFAMILY NOT NAMED	coord: 19..178
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 69..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002243.1	HG10002243.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005740	mitochondrial envelope