HG10002237 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002237
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	TATA-binding protein-associated factor 2N-like
Location	Chr11: 4772230 .. 4772601 (-)
RNA-Seq Expression	HG10002237
Synteny	HG10002237

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAATGGCAGCGGTGGCGGAAGAGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAAGCCGGTCAAGTTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGTCCCGCCCGTACTACTGCCTCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGGTATTAG

mRNA sequence

ATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAATGGCAGCGGTGGCGGAAGAGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAAGCCGGTCAAGTTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGTCCCGCCCGTACTACTGCCTCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGGTATTAG

Coding sequence (CDS)

ATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAATGGCAGCGGTGGCGGAAGAGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAAGCCGGTCAAGTTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGTCCCGCCCGTACTACTGCCTCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGGTATTAG

Protein sequence

MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWICARY

Homology

[Close]

BLAST of HG10002237 vs. NCBI nr
Match: XP_038892097.1 (zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida] >XP_038892106.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 255.8 bits (652), Expect = 2.0e-64
Identity = 116/122 (95.08%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISP+ FASPART ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPYAFASPARTAASAWKSGDWIC 120

Query: 121 AR 123
           AR
Sbjct: 121 AR 122

[Close]

BLAST of HG10002237 vs. NCBI nr
Match: XP_008454250.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo])

HSP 1 Score: 253.4 bits (646), Expect = 9.7e-64
Identity = 115/122 (94.26%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF FASPAR  ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSGDWIC 120

Query: 121 AR 123
           AR
Sbjct: 121 AR 122

[Close]

BLAST of HG10002237 vs. NCBI nr
Match: KGN52873.1 (hypothetical protein Csa_014917 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF F SPART ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGDWIC 120

Query: 121 AR 123
           AR
Sbjct: 121 AR 122

[Close]

BLAST of HG10002237 vs. NCBI nr
Match: XP_022955940.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >XP_022955941.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 2.9e-60
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GG R GSGFG+GGSDVRPGDWYCSVGN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF FA+PAR+ ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWIC 120

Query: 121 AR 123
           AR
Sbjct: 121 AR 122

[Close]

BLAST of HG10002237 vs. NCBI nr
Match: KAA0044427.1 (putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa] >TYK29555.1 putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 3.2e-59
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSG 117
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF FASPAR  ASAWKSG
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSG 116

[Close]

BLAST of HG10002237 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 41/130 (31.54%), Postives = 43/130 (33.08%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDP------------------KNGSGGGRGGSGF-- 62
           RPGDWNC  C   NFQRR  C RC  P                    G+  G G S F  
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  GYGGS-----------------------------------DVRPGDWYCSVGNCGAHNFA 78
            YGGS                                     R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

[Close]

BLAST of HG10002237 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.6e-05
Identity = 25/47 (53.19%), Postives = 28/47 (59.57%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPK---NGSGGGRGGSGFGYGG 47
           R GDW C SC + NF  R+ C RC  PK    GS GG GG G+G GG
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGG 321

[Close]

BLAST of HG10002237 vs. ExPASy TrEMBL
Match: A0A1S3BZE4 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucumis melo OX=3656 GN=LOC103494712 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.7e-64
Identity = 115/122 (94.26%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF FASPAR  ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSGDWIC 120

Query: 121 AR 123
           AR
Sbjct: 121 AR 122

[Close]

BLAST of HG10002237 vs. ExPASy TrEMBL
Match: A0A0A0KTI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.8e-63
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF F SPART ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGDWIC 120

Query: 121 AR 123
           AR
Sbjct: 121 AR 122

[Close]

BLAST of HG10002237 vs. ExPASy TrEMBL
Match: A0A6J1GWG9 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662 GN=LOC111457775 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GG R GSGFG+GGSDVRPGDWYCSVGN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF FA+PAR+ ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWIC 120

Query: 121 AR 123
           AR
Sbjct: 121 AR 122

[Close]

BLAST of HG10002237 vs. ExPASy TrEMBL
Match: A0A5A7TRE1 (Putative RNA-binding protein C17H9.04c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001610 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSG 117
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF FASPAR  ASAWKSG
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSG 116

[Close]

BLAST of HG10002237 vs. ExPASy TrEMBL
Match: A0A6J1IX27 (ranBP2-type zinc finger protein At1g67325-like OS=Cucurbita maxima OX=3661 GN=LOC111479282 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.7e-58
Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGN 60
           M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GGGR GSGFG+GGSDVRPGDWYCS+GN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKAG-GGGRAGSGFGFGGSDVRPGDWYCSLGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF F +PAR+ ASAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFGFPTPARSPASAWKSGDWIC 120

Query: 121 AR 123
           AR
Sbjct: 121 AR 121

[Close]

BLAST of HG10002237 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 154.5 bits (389), Expect = 5.7e-38
Identity = 82/145 (56.55%), Postives = 89/145 (61.38%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSG----------GGRGGSGFGY-GGSDV 60
           MSRPGDWNCRSC HLNFQRRD CQRCGD ++G G          GGR  S FG+  GSDV
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 61  RPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA------------FDFDIPRPSPRGI 120
           RPGDWYC+VGNCG HNFASRS+CFKCG FKD+  A            FD DI R      
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRS----- 120

Query: 121 SPFTFASPARTTASAWKSGDWICAR 123
                  P     S+WKSGDWIC R
Sbjct: 121 -----RVPGNGGRSSWKSGDWICTR 135

[Close]

BLAST of HG10002237 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 9.4e-33
Identity = 74/141 (52.48%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK---------NGSGGGRGGSGFGYG-GSDVR 60
           M+RPGDWNCR C HLNFQRRD CQRC +P+         +G GG    S FG+  G DVR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 61  PGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD-------FDIPRPSPRGISPFTFA 120
           PGDWYC++G+CG HNFA+RSSCFKCGA KD+ S           D+     RG+  F  +
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query: 121 SP--ARTTASAWKSGDWICAR 123
           S     T  S WKSGDWIC R
Sbjct: 121 SSGGGGTGRSPWKSGDWICPR 141

[Close]

BLAST of HG10002237 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-21
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAH 64
           GDW C +CQH NF++R+ CQ+CG PK    GG   S + Y  ++V  GDWYC   NCG+H
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK---FGGVDVSTYLYNRTEVMAGDWYCGALNCGSH 65

Query: 65  NFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFASPARTTASAWKSGDWICAR 123
           N+ASR+SC++CG  K + +   +        G     + +        WK+GDW+C R
Sbjct: 66  NYASRTSCYRCGMIKVEYTEQYY--------GAQMVAYGNDGAACPPGWKTGDWVCPR 112

[Close]

BLAST of HG10002237 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 23/73 (31.51%), Postives = 30/73 (41.10%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCG 62
           + GDW C++C  LNF +   C RC D                    + PG+W C   +C 
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDKPT--------------LRQINPGEWECE--SCN 335

Query: 63  AHNFASRSSCFKC 76
             NF   S C KC
Sbjct: 339 YINFRRNSICLKC 335

[Close]

BLAST of HG10002237 vs. TAIR 10
Match: AT1G70650.2 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 23/73 (31.51%), Postives = 30/73 (41.10%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCG 62
           + GDW C++C  LNF +   C RC D                    + PG+W C   +C 
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDKPT--------------LRQINPGEWECE--SCN 335

Query: 63  AHNFASRSSCFKC 76
             NF   S C KC
Sbjct: 339 YINFRRNSICLKC 335

The following BLAST results are available for this feature:

BLAST of HG10002237 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892097.1	2.0e-64	95.08	zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida] >XP...	[more]
XP_008454250.1	9.7e-64	94.26	PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]	[more]
KGN52873.1	1.4e-62	93.44	hypothetical protein Csa_014917 [Cucumis sativus]	[more]
XP_022955940.1	2.9e-60	87.70	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >XP_0229...	[more]
KAA0044427.1	3.2e-59	93.97	putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa] >TYK29555...	[more]

BLAST of HG10002237 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	3.3e-06	31.54	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	3.6e-05	53.19	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]

BLAST of HG10002237 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BZE4	4.7e-64	94.26	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KTI0	6.8e-63	93.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1	[more]
A0A6J1GWG9	1.4e-60	87.70	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662...	[more]
A0A5A7TRE1	1.6e-59	93.97	Putative RNA-binding protein C17H9.04c-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1IX27	1.7e-58	86.89	ranBP2-type zinc finger protein At1g67325-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of HG10002237 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	5.7e-38	56.55	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	9.4e-33	52.48	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	3.7e-21	39.83	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G70650.1	3.7e-05	31.51	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G70650.2	3.7e-05	31.51	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 5..29 e-value: 9.1E-5 score: 31.8 coord: 52..78 e-value: 2.3E-5 score: 33.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 50..77 e-value: 8.1E-6 score: 25.0 coord: 3..30 e-value: 0.002 score: 17.4
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 54..75
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.732388
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 50..81 score: 9.890478
None	No IPR available	GENE3D	4.10.1060.10		coord: 46..81 e-value: 1.4E-12 score: 48.6 coord: 2..32 e-value: 6.9E-10 score: 40.0
None	No IPR available	PANTHER	PTHR23111:SF26	RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..122
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 42..81
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002237.1	HG10002237.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding