HG10001888 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001888
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	Chr11: 1410521 .. 1413337 (-)
RNA-Seq Expression	HG10001888
Synteny	HG10001888

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGATCATCCACTTCAAATAATCATGTCTTCATGAAGAAACAACATGCTCATCAAGCTAGACCTGCCTATTCCTCAACGACGAAAAACCCGACATCAAAGGTAATTAGTACTCTCGACGTCGGAGACAGAGATGGTTTCGGTGCTGCGGAACGTCATGAAAAGGTTGCATCAGCTAGGGAGAAACTAGAGGAAGATAATGATGATTGGAACCATGGTGAAAAGTTCAAAGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGATTGGGAAGGTGTCATTATTGCAGGTGAGTGCATTATTTTTGTAAAGTGGATAATTTTTAGGTTAAAAAAATACTTTCTGTCCATAAACTTTCACAAAGTAAATATTTAACTAGTCATTAAACTTTAATTTGCAATGGTTTAATCTCAACACACTTTTTTTTCTTATTTATTTAAGAATTTAGCCTAGTGGTAAAAAAGGAAATTCCTCGAGTTGTCTAGTCGAGGTACGCGTAAGCTGATCCGGACACTCACATATATAAAACAAAGAAAGAATATATATATATATATATATATATATATATATATATATATATATATATATATATAGCAATTTAGGGGCTATTTGGGACGCTGAATCGGTTATTATAGTTAGTAGTTGTTATAGTATGTGATTATAATAATATGTGTTTGAAGTGTAGACTATTTTAGTCCGAGTAACAAATGAGGAGAGAGGATAATTACAAAATAGTAAACACGGTAGATAAGTGAGGGTTTTCAAATAGTTTTACGGTAGCGAAACGTGAGTTATAATAATTGAGAACTTCAACTATTATAATGGGAGACCTAAACATTGGGTGAGCTATAATAATACCAAACTCCACTCAAAGCAAGTTAAGGGCTCAAACACCCCACGAGTCTTTGTACTTTAAAATTTATATTGGCTTAATTCTCTATCGTGAAAAATGTGGTTAAAATTTATTAAGATATCTTACATACACAAATTGATAAATTGATTAGGGACTAGATGTGTTTATAATGTACAAAAATTAAGTCGTCATATAATAAAAATTGACACTTAAATTGCTACAATCATTACAAAATTAAAATTATAAAAGTTAAATTCTTACAAACTAAAGTACATAGACCATAAAAAGTCGGCGACCAAAAGTATTTTTTTTTACCATAATGTTATTAACAATATATTAAATGATTAAAATTTTTATAACTTATCCGTTTTTTTTTAAATTTTAATGATAGTTTAATCTATCATAGACTATTTAATCTACTTTTCTTTTACCACCTTATAGAGAAAATTAAACATTATATTCTCAGTTAATATTTTAGTGCATCCTAGACTGCATCTATCTTTATATATCCTATTTAAATATACATTACTTAGAAGCAAAGAGGAGGAAGTTTGTTGAATTATATCCAGAAGCAGCTACAAATCAAGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAACTCCTATCTCCCACAAGCCGAACTACTTAACGGTATTTAATCACGTCGAGTTTGATAATGTTTTTTTTTTTTTTTTAATTTAATATTTTTAAAAAGAGAATTTTAATTTTTTAATTTCTCTATAGGGTAGATATATGTTAAAATAATCCCTAACTATTTAGAAAAAAAATTTAAAAATAGAAAAATTAGAAAAATTATTTACACCAGCAAAATTTTTAGATAGTTAAGTCTATCAAGGTCTATCAGTGATAAAAATGATAGAAGTCTATCAATGTCTATCAGTGTTGTTTTTTACTATTTTCTTTTAAATAGTTTGACATTTTTTCTATCCGAAATTTTTTTTCAACTATTTAGGTAATTTAGATTTTGTGTTTAATAATGTTTTAAAATAATTTAATCTATCTTTAATATATTAGAAATTCTAAATTTAATCACTACGTAAAAAAAATGTTAAAATTGATAGGAAAAACTAAGAGAATTTAAAATATTAATGACCCAATTGAGAAATGAGATTATTTGATATACTTAGCCTCTTTTTATGTTATAATATATTTTTAAGGTTATTTTCAAATATAGAAAAATGAGCCAAACTATTTATAAATATAGAAAATTTTCGTTGTCTATCAACAATGGACTTCGATAGTTTGATATTTTTTCTGTTCATAGTAATTTTCCATATTTCTATTCATAAATACTTATCGCTAAAAATCAAAACTCTATCCCTCTCTCTTTGCTAAAGTTTTATATATAAATGGTAAATAATTTTAATTTATTTTTATTACAATTCAAATATTACAAGGGGTTACTTTTTTTTTTTTAACAATCACGGGATGGAAGATTGAACCACATCAAAATCTTTAAGACACAATAACGAGTGTCTTATCCACTTAACTATATATACTTGAATTGGGTATGAGCCATGAGGGCCAGGGTAAAGTTTCAAACTCGAGATTTCTAATAAAAAATATTATTATGTCTTAACTAGCTGAGTTATGTTAAATTATGGTAATTAGTGTTTCTTGTTTATTGCAGGTAGGGCAGCCATGATAGGTTTTTTCATGGCCTATGTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGTAATTTCATAGGCAAAGCAGCTGTTTTTCTAACAGTCATTGGTGTGTTGCTGTTTAGACAAACTGAAGACATTGAGGGCTTAAGAAAGATAGCTGAAGAAGCCACCTTTTATGACAAGCAATGGCAATCTTCATGGCAAAACCATAATGAAAAATAA

mRNA sequence

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGATCATCCACTTCAAATAATCATGTCTTCATGAAGAAACAACATGCTCATCAAGCTAGACCTGCCTATTCCTCAACGACGAAAAACCCGACATCAAAGGTAATTAGTACTCTCGACGTCGGAGACAGAGATGGTTTCGGTGCTGCGGAACGTCATGAAAAGGTTGCATCAGCTAGGGAGAAACTAGAGGAAGATAATGATGATTGGAACCATGGTGAAAAGTTCAAAGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGATTGGGAAGGTGTCATTATTGCAGGTAGGGCAGCCATGATAGGTTTTTTCATGGCCTATGTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGTAATTTCATAGGCAAAGCAGCTGTTTTTCTAACAGTCATTGGTGTGTTGCTGTTTAGACAAACTGAAGACATTGAGGGCTTAAGAAAGATAGCTGAAGAAGCCACCTTTTATGACAAGCAATGGCAATCTTCATGGCAAAACCATAATGAAAAATAA

Coding sequence (CDS)

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGATCATCCACTTCAAATAATCATGTCTTCATGAAGAAACAACATGCTCATCAAGCTAGACCTGCCTATTCCTCAACGACGAAAAACCCGACATCAAAGGTAATTAGTACTCTCGACGTCGGAGACAGAGATGGTTTCGGTGCTGCGGAACGTCATGAAAAGGTTGCATCAGCTAGGGAGAAACTAGAGGAAGATAATGATGATTGGAACCATGGTGAAAAGTTCAAAGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTAAAGAATGGTAAGATGGATTGGGAAGGTGTCATTATTGCAGGTAGGGCAGCCATGATAGGTTTTTTCATGGCCTATGTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGTAATTTCATAGGCAAAGCAGCTGTTTTTCTAACAGTCATTGGTGTGTTGCTGTTTAGACAAACTGAAGACATTGAGGGCTTAAGAAAGATAGCTGAAGAAGCCACCTTTTATGACAAGCAATGGCAATCTTCATGGCAAAACCATAATGAAAAATAA

Protein sequence

MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFGAAERHEKVASAREKLEEDNDDWNHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIAGRAAMIGFFMAYVVDALTGIGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSWQNHNEK

Homology

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BLAST of HG10001888 vs. NCBI nr
Match: KAG6576837.1 (Mediator of RNA polymerase II transcription subunit 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.4 bits (760), Expect = 9.2e-77
Identity = 150/192 (78.12%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFGAA 60
           MASIAISAS PRS TS NHV  K+QHA Q RP YSS  KNPT ++I T +VGDRD F A 
Sbjct: 262 MASIAISASFPRSCTS-NHVSNKQQHARQTRPTYSSMMKNPTPELIKTPNVGDRDAFDAP 321

Query: 61  ERHEKVASAREKLEEDNDDWNHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIAGRAAM 120
           +RH  VASA +KLEED DD NHG+ F D+RWKNGTWDLNMFVKNGKMDWEGVI+AGRAAM
Sbjct: 322 KRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAGRAAM 381

Query: 121 IGFFMAYVVDALTGIGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYD 180
           IGFFMAY+VDALTGIGIVGQSGNFI K+A+F+TVIGVL+FRQT+DIEGLRK+AEEATFYD
Sbjct: 382 IGFFMAYLVDALTGIGIVGQSGNFISKSALFVTVIGVLVFRQTQDIEGLRKLAEEATFYD 441

Query: 181 KQWQSSWQNHNE 193
           KQWQ+SWQN NE
Sbjct: 442 KQWQASWQNQNE 452

[Close]

BLAST of HG10001888 vs. NCBI nr
Match: XP_038875279.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-71
Identity = 157/238 (65.97%), Postives = 164/238 (68.91%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFGAA 60
           MASIAISASLPR+STS NHVF+K               KNPT KVISTLDVGDRDG GA 
Sbjct: 1   MASIAISASLPRASTS-NHVFVK---------------KNPTQKVISTLDVGDRDGVGAV 60

Query: 61  ERHEKVASAREKLEEDNDDWNHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA----- 120
           ERH  VASAREK+EEDNDDWNHGEKF DKRWKNGTWDLNMFVKNGKMDWEGVI+A     
Sbjct: 61  ERHGNVASAREKVEEDNDDWNHGEKFTDKRWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120

Query: 121 -----------------------------------------GRAAMIGFFMAYVVDALTG 180
                                                    GRAAMIGFFMAY+VDALTG
Sbjct: 121 KFLELYPEAATNQEPVLFRSSVIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYIVDALTG 180

Query: 181 IGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSWQNHNE 193
           IGIVGQSGNFI KAA+F TVIGVLLFRQTEDIE LR IAEEAT YDKQWQ+SWQN NE
Sbjct: 181 IGIVGQSGNFICKAALFFTVIGVLLFRQTEDIESLRNIAEEATLYDKQWQTSWQNQNE 222

[Close]

BLAST of HG10001888 vs. NCBI nr
Match: XP_023551912.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.7 bits (709), Expect = 7.5e-71
Identity = 152/238 (63.87%), Postives = 168/238 (70.59%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFGAA 60
           MASIAISAS PRS TS NHV   +QHA QARP +SS TKNPT ++I T DVGDRD F A 
Sbjct: 1   MASIAISASFPRSCTS-NHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAP 60

Query: 61  ERHEKVASAREKLEEDNDDWNHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA----- 120
           +RH  VASA +KLEED DD NHG+ F D+RWKNGTWDLNMFVKNGKMDWEGVI+A     
Sbjct: 61  KRHGNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120

Query: 121 -----------------------------------------GRAAMIGFFMAYVVDALTG 180
                                                    GRAAMIGFFMAY+VDALTG
Sbjct: 121 KFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDALTG 180

Query: 181 IGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSWQNHNE 193
           IGIVGQSGNFI K+A+F+TVIGVLLFRQT+DIEGLRK+AEEATFYDKQWQ+SWQN NE
Sbjct: 181 IGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNE 237

[Close]

BLAST of HG10001888 vs. NCBI nr
Match: XP_022984403.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-69
Identity = 153/239 (64.02%), Postives = 168/239 (70.29%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRD-GFGA 60
           MASIAISAS  RS TS NHV  K+QHA QARP YSS TKNPT ++I T DVG+RD  F A
Sbjct: 47  MASIAISASFRRSCTS-NHVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDA 106

Query: 61  AERHEKVASAREKLEEDNDDWNHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA---- 120
            +RH  VASA +KLEED DD NHG+ F D+RWKNGTWDLNMFVKNGKMDWEGVI+A    
Sbjct: 107 PKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 166

Query: 121 ------------------------------------------GRAAMIGFFMAYVVDALT 180
                                                     GRAAMIGFFMAY+VDALT
Sbjct: 167 RKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALT 226

Query: 181 GIGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSWQNHNE 193
           GIGIVGQSGNFI KAA+F+TVIGVLLFRQT+DIEGLRK+AEEATFYDKQWQ+SWQN NE
Sbjct: 227 GIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNE 284

[Close]

BLAST of HG10001888 vs. NCBI nr
Match: XP_022922577.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 268.1 bits (684), Expect = 6.0e-68
Identity = 151/238 (63.45%), Postives = 164/238 (68.91%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFGAA 60
           MASIAISAS PRS TS NHV   KQ   QARP YSS TKNPT ++I T  VGDRD   A 
Sbjct: 1   MASIAISASFPRSCTS-NHV-SNKQQRRQARPTYSSMTKNPTPELIKTPYVGDRDALDAP 60

Query: 61  ERHEKVASAREKLEEDNDDWNHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA----- 120
           +RH  VASA +KLEED DD NHG+ F D+RWKNGTWDLNMFVKNGKMDWEGVI+A     
Sbjct: 61  KRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120

Query: 121 -----------------------------------------GRAAMIGFFMAYVVDALTG 180
                                                    GRAAMIGFFMAY+VDALTG
Sbjct: 121 KFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTG 180

Query: 181 IGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSWQNHNE 193
           IGIVGQSGNFI KAA+F+TVIGVLLFRQT+DIEGLRK+AEEATFYDKQWQ+SWQN NE
Sbjct: 181 IGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQNQNE 236

[Close]

BLAST of HG10001888 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 63/155 (40.65%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 85  KFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA----------------------------- 144
           KF+D RW NGTWDL  F K+GK DW+ VI+A                             
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 145 -----------------GRAAMIGFFMAYVVDALTGIGIVGQSGNFIGKAAVFLTVIGVL 194
                            GRAAMIGFFMAY VD+LTG+G+V Q GNF  K  +F+ V GVL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

[Close]

BLAST of HG10001888 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.2e-24
Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 85  KFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA----------------------------- 144
           K+++ +W NGTWDL  F K+GK DW+ VI++                             
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 145 -----------------GRAAMIGFFMAYVVDALTGIGIVGQSGNFIGKAAVFLTVIGVL 189
                            GRAAMIGFFMAY VD+LTG+G+V Q GNF  K  +F+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

[Close]

BLAST of HG10001888 vs. ExPASy TrEMBL
Match: A0A6J1JAE2 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482711 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.9e-70
Identity = 153/239 (64.02%), Postives = 168/239 (70.29%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRD-GFGA 60
           MASIAISAS  RS TS NHV  K+QHA QARP YSS TKNPT ++I T DVG+RD  F A
Sbjct: 47  MASIAISASFRRSCTS-NHVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDA 106

Query: 61  AERHEKVASAREKLEEDNDDWNHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA---- 120
            +RH  VASA +KLEED DD NHG+ F D+RWKNGTWDLNMFVKNGKMDWEGVI+A    
Sbjct: 107 PKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 166

Query: 121 ------------------------------------------GRAAMIGFFMAYVVDALT 180
                                                     GRAAMIGFFMAY+VDALT
Sbjct: 167 RKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALT 226

Query: 181 GIGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSWQNHNE 193
           GIGIVGQSGNFI KAA+F+TVIGVLLFRQT+DIEGLRK+AEEATFYDKQWQ+SWQN NE
Sbjct: 227 GIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQNQNE 284

[Close]

BLAST of HG10001888 vs. ExPASy TrEMBL
Match: A0A6J1E3P1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430544 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.9e-68
Identity = 151/238 (63.45%), Postives = 164/238 (68.91%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFGAA 60
           MASIAISAS PRS TS NHV   KQ   QARP YSS TKNPT ++I T  VGDRD   A 
Sbjct: 1   MASIAISASFPRSCTS-NHV-SNKQQRRQARPTYSSMTKNPTPELIKTPYVGDRDALDAP 60

Query: 61  ERHEKVASAREKLEEDNDDWNHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA----- 120
           +RH  VASA +KLEED DD NHG+ F D+RWKNGTWDLNMFVKNGKMDWEGVI+A     
Sbjct: 61  KRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRR 120

Query: 121 -----------------------------------------GRAAMIGFFMAYVVDALTG 180
                                                    GRAAMIGFFMAY+VDALTG
Sbjct: 121 KFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTG 180

Query: 181 IGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSWQNHNE 193
           IGIVGQSGNFI KAA+F+TVIGVLLFRQT+DIEGLRK+AEEATFYDKQWQ+SWQN NE
Sbjct: 181 IGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQNQNE 236

[Close]

BLAST of HG10001888 vs. ExPASy TrEMBL
Match: A0A5D3CYT8 (Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00310 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 5.1e-65
Identity = 150/241 (62.24%), Postives = 165/241 (68.46%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKK--QHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFG 60
           MASIAISASLPR++ + NHV MKK  QHAH A+PAYSS TKNPT KVISTLDVG+RD   
Sbjct: 1   MASIAISASLPRAA-NPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGA 60

Query: 61  AAERHEK----VASAREKLEEDNDDW-NHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVI 120
           A ++H       +SA  K+EEDNDDW N+GE+F DKRWKNGTWDLNMFVKNGKMDWEGVI
Sbjct: 61  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 120

Query: 121 IA----------------------------------------------GRAAMIGFFMAY 180
           +                                               GRAAMIGFFM Y
Sbjct: 121 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180

Query: 181 VVDALTGIGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSW 189
            VDALTGIGIVGQSGNFI K A+FLTVIGVLLFRQ+ED+E LR IAEEATFYDKQWQSSW
Sbjct: 181 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSW 240

[Close]

BLAST of HG10001888 vs. ExPASy TrEMBL
Match: A0A1S3BXB8 (uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 5.1e-65
Identity = 150/241 (62.24%), Postives = 165/241 (68.46%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKK--QHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFG 60
           MASIAISASLPR++ + NHV MKK  QHAH A+PAYSS TKNPT KVISTLDVG+RD   
Sbjct: 1   MASIAISASLPRAA-NPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGA 60

Query: 61  AAERHEK----VASAREKLEEDNDDW-NHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVI 120
           A ++H       +SA  K+EEDNDDW N+GE+F DKRWKNGTWDLNMFVKNGKMDWEGVI
Sbjct: 61  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 120

Query: 121 IA----------------------------------------------GRAAMIGFFMAY 180
           +                                               GRAAMIGFFM Y
Sbjct: 121 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 180

Query: 181 VVDALTGIGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSW 189
            VDALTGIGIVGQSGNFI K A+FLTVIGVLLFRQ+ED+E LR IAEEATFYDKQWQSSW
Sbjct: 181 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSW 240

[Close]

BLAST of HG10001888 vs. ExPASy TrEMBL
Match: A0A0A0KUF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 8.1e-63
Identity = 147/238 (61.76%), Postives = 162/238 (68.07%), Query Frame = 0


Query: 1   MASIAISASLPRSSTSNNHVFMKKQHAHQARPAYSSTTKNPTSKVISTLDVGDRDGFGAA 60
           MASIAISASLPR+S SN+    KKQ  H A+P YSSTTKNPT KVISTLDV +RD  GAA
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDD-GAA 60

Query: 61  ERHEK--VASAREKLEED-NDDW-NHGEKFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA- 120
           +++ +   ASA  K EED NDDW N+GE+F DKRWKNGTWDLNMFV+NGKMDWEGVI+  
Sbjct: 61  QQYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEE 120

Query: 121 ---------------------------------------------GRAAMIGFFMAYVVD 180
                                                        GRAAMIGFFM Y VD
Sbjct: 121 AKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVD 180

Query: 181 ALTGIGIVGQSGNFIGKAAVFLTVIGVLLFRQTEDIEGLRKIAEEATFYDKQWQSSWQ 189
           ALTG+GIVGQSGNFI K A+FLTVIGVLLFRQ+EDIE LR IAEEATFYDKQWQSSWQ
Sbjct: 181 ALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237

[Close]

BLAST of HG10001888 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 63/155 (40.65%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 85  KFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA----------------------------- 144
           KF+D RW NGTWDL  F K+GK DW+ VI+A                             
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 145 -----------------GRAAMIGFFMAYVVDALTGIGIVGQSGNFIGKAAVFLTVIGVL 194
                            GRAAMIGFFMAY VD+LTG+G+V Q GNF  K  +F+ V GVL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

[Close]

BLAST of HG10001888 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 112.1 bits (279), Expect = 5.1e-25
Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 85  KFKDKRWKNGTWDLNMFVKNGKMDWEGVIIA----------------------------- 144
           K+++ +W NGTWDL  F K+GK DW+ VI++                             
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 145 -----------------GRAAMIGFFMAYVVDALTGIGIVGQSGNFIGKAAVFLTVIGVL 189
                            GRAAMIGFFMAY VD+LTG+G+V Q GNF  K  +F+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

The following BLAST results are available for this feature:

BLAST of HG10001888 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576837.1	9.2e-77	78.13	Mediator of RNA polymerase II transcription subunit 31, partial [Cucurbita argyr...	[more]
XP_038875279.1	2.6e-71	65.97	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hisp...	[more]
XP_023551912.1	7.5e-71	63.87	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo...	[more]
XP_022984403.1	1.4e-69	64.02	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]
XP_022922577.1	6.0e-68	63.45	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita mosc...	[more]

BLAST of HG10001888 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	2.6e-26	40.65	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	7.2e-24	38.67	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of HG10001888 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAE2	6.9e-70	64.02	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1E3P1	2.9e-68	63.45	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]
A0A5D3CYT8	5.1e-65	62.24	Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BXB8	5.1e-65	62.24	uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=...	[more]
A0A0A0KUF5	8.1e-63	61.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1	[more]

BLAST of HG10001888 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	1.9e-27	40.65	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	5.1e-25	38.67	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..42
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 17..114
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 114..191
None	No IPR available	PANTHER	PTHR14154:SF56	FACTOR, PUTATIVE-RELATED	coord: 17..114
None	No IPR available	PANTHER	PTHR14154:SF56	FACTOR, PUTATIVE-RELATED	coord: 114..191
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 114..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001888.1	HG10001888.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane