HG10001817 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001817
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box/LRR-repeat protein
LocationChr11: 671042 .. 672016 (-)
RNA-Seq ExpressionHG10001817
SyntenyHG10001817
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATAGTGAAGAAGAAGAAGAAGATGGAAGACAGAATCAGCCTTCTCCCAGATTCTCTTCTTCATCACATTCTCTCCAACTTGAACACACAACAGGTTGTGCGGACTTGTGTTCTATCAAAATGGTGGAAGACCCTTTGGACTCGTATTCCCGTACTCAACTTCTGTGCCACTCCCACAAGTTTAGATTTGATTATACCTTTGAGCGAATAAAATCGTCATTTAAAAAATTCTTCAGAGTATTATCCGAACATTGCTGCACAAATATTCAAAAGTTGAGTTACTCTGCAATAGGCATTGACGCAATTTTAGTAGAGTTATTGATATGCAATGCACGTTGCTGCAATGTTCGAGAACTTTAACATCGATAGCTATTATGATCCTCAAAGTGATGATGCCATTTATGATTGGAAATACTGTTTCTCTGCATGTTTATCGCTCACTGTCCTGAAGATGGTGTGTGGGTTTGCGGATAACTGGGGAACATTGGTGTTGCCATCTTTGAAAATTGTTGAGATTGATTGTAAATGGAACTGGGACTGGGAGGCTGAGTATGGCGAAGTTGAGATGTTCTCGGGCTGTCCAAATTTGGAATCTTTGGTTTTTCTTGACTTTTCTTTTTCGAGTGTTAGAATTTGTGCTCCAAAACTTGACAACTTTGAATTATGTATTTCTGATCAATGGTTCTTAACATCTCCGAATCTTGAACTACTTGCACCAAATCTGAAATCTGTCAAGTTTAGCAACATTTTACCAATTGTCACGTCTGCATTAGAGTTTTCGTGCATACACAAGGTTATGATAGCAATTGAAGATTTTACATTTAGTATGGGAAATGACATAAGCATAAGTAGAGAAGAGGCAGGAGCAAATTTCTGTGAGGTTCTTAGAGTGTTTTATAATGCAACCTCTTTTGTACTGCCCATGAAAGTACAGGTTATGATCTTCTTTGAGTGGAATTTCTTTTCATAA

mRNA sequence

ATGTCGATAGTGAAGAAGAAGAAGAAGATGGAAGACAGAATCAGCCTTCTCCCAGATTCTCTTCTTCATCACATTCTCTCCAACTTGAACACACAACAGGTTGTGCGGACTTGTGTTCTATCAAAATGGTGGAAGACCCTTTGGACTCGTATTCCCGTACTCAACTTCATCGATAGCTATTATGATCCTCAAAGTGATGATGCCATTTATGATTGGAAATACTGTTTCTCTGCATGTTTATCGCTCACTGTCCTGAAGATGGTGTGTGGGTTTGCGGATAACTGGGGAACATTGGTGTTGCCATCTTTGAAAATTGTTGAGATTGATTGTAAATGGAACTGGGACTGGGAGGCTGAGTATGGCGAAGTTGAGATGTTCTCGGGCTGTCCAAATTTGGAATCTTTGGTTTTTCTTGACTTTTCTTTTTCGAGTGTTAGAATTTGTGCTCCAAAACTTGACAACTTTGAATTATGTATTTCTGATCAATGGTTCTTAACATCTCCGAATCTTGAACTACTTGCACCAAATCTGAAATCTGTCAAGTTTAGCAACATTTTACCAATTGTCACGTCTGCATTAGAGTTTTCGTGCATACACAAGGTTATGATAGCAATTGAAGATTTTACATTTAGTATGGGAAATGACATAAGCATAAGTAGAGAAGAGGCAGGAGCAAATTTCTGTGAGGTTCTTAGAGTGTTTTATAATGCAACCTCTTTTGTACTGCCCATGAAAGTACAGGTTATGATCTTCTTTGAGTGGAATTTCTTTTCATAA

Coding sequence (CDS)

ATGTCGATAGTGAAGAAGAAGAAGAAGATGGAAGACAGAATCAGCCTTCTCCCAGATTCTCTTCTTCATCACATTCTCTCCAACTTGAACACACAACAGGTTGTGCGGACTTGTGTTCTATCAAAATGGTGGAAGACCCTTTGGACTCGTATTCCCGTACTCAACTTCATCGATAGCTATTATGATCCTCAAAGTGATGATGCCATTTATGATTGGAAATACTGTTTCTCTGCATGTTTATCGCTCACTGTCCTGAAGATGGTGTGTGGGTTTGCGGATAACTGGGGAACATTGGTGTTGCCATCTTTGAAAATTGTTGAGATTGATTGTAAATGGAACTGGGACTGGGAGGCTGAGTATGGCGAAGTTGAGATGTTCTCGGGCTGTCCAAATTTGGAATCTTTGGTTTTTCTTGACTTTTCTTTTTCGAGTGTTAGAATTTGTGCTCCAAAACTTGACAACTTTGAATTATGTATTTCTGATCAATGGTTCTTAACATCTCCGAATCTTGAACTACTTGCACCAAATCTGAAATCTGTCAAGTTTAGCAACATTTTACCAATTGTCACGTCTGCATTAGAGTTTTCGTGCATACACAAGGTTATGATAGCAATTGAAGATTTTACATTTAGTATGGGAAATGACATAAGCATAAGTAGAGAAGAGGCAGGAGCAAATTTCTGTGAGGTTCTTAGAGTGTTTTATAATGCAACCTCTTTTGTACTGCCCATGAAAGTACAGGTTATGATCTTCTTTGAGTGGAATTTCTTTTCATAA

Protein sequence

MSIVKKKKKMEDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNFIDSYYDPQSDDAIYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKWNWDWEAEYGEVEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLELLAPNLKSVKFSNILPIVTSALEFSCIHKVMIAIEDFTFSMGNDISISREEAGANFCEVLRVFYNATSFVLPMKVQVMIFFEWNFFS
Homology
BLAST of HG10001817 vs. NCBI nr
Match: XP_038890214.1 (F-box/LRR-repeat protein At3g26922-like [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 5.2e-59
Identity = 139/311 (44.69%), Postives = 169/311 (54.34%), Query Frame = 0

Query: 10  MEDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF--------IDSYY 69
           MEDRISLLPD LLHHILS LNT+ VV+TCVLSK WKTLWT IP LNF        + S+ 
Sbjct: 3   MEDRISLLPDVLLHHILSTLNTKCVVQTCVLSKRWKTLWTHIPTLNFDYNSYSSSLSSFK 62

Query: 70  D---------------------------------PQSDD--------------------- 129
           D                                  Q++D                     
Sbjct: 63  DNDDEAKEKSFKYFIFRVLSKHCTTNIHKLTYTTSQNEDELVLVEFLICYAGSRNVQQLC 122

Query: 130 -------AIYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKW-NWDWEAE 189
                   IYDW YCFS C SL  LKMVC F  +WG L +PSLKI+EI+C W   D EA 
Sbjct: 123 INTYDTIGIYDWNYCFSVCSSLIGLKMVCAFVHDWGVLAIPSLKILEIECDWYERDKEAN 182

Query: 190 YGEVEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLELLAPNLKS 249
           Y  + MF GCPNLESLV +D+ F S  I APKL N +LC S +  LT P +EL  P L++
Sbjct: 183 YKGITMFPGCPNLESLVLVDYLFESSTISAPKLKNLKLCASPRMELTFPEVELFTPTLET 242

Query: 250 VKFSNILPIVTSALEFSCIHKVMIAIEDFTFSMGNDISISREEAGANFCEVLRVFYNATS 251
           V F N+LPIV S  EFSCIHKV I ++D  F     +    ++  +NF E+L VF+NA S
Sbjct: 243 VNFINVLPIVKSDSEFSCIHKVDIQLKDSIFER---VGSQTQKLKSNFRELLSVFHNARS 302

BLAST of HG10001817 vs. NCBI nr
Match: XP_008459617.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 3.4e-58
Identity = 136/308 (44.16%), Postives = 169/308 (54.87%), Query Frame = 0

Query: 11  EDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF-IDSY-------YD 70
           +DRISLLPDSLLHHILS  NT+ VV+TC+LSK WKTLWT IP LNF  +S+       YD
Sbjct: 16  DDRISLLPDSLLHHILSTFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYD 75

Query: 71  ---------------------------------PQSDDA--------------------- 130
                                            P  D++                     
Sbjct: 76  DEESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCVN 135

Query: 131 -----IYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKWN-WDWEAEYGE 190
                IY+W YCF  C SL  LKMVCGF D+WG L LPSLKI+EI C W+  D  A Y  
Sbjct: 136 TYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDG 195

Query: 191 VEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLELLAPNLKSVKF 250
           + MFSGCPNLESLV +D+ F S  I AP+L+NF+LC S    LT P +ELL P LK+V F
Sbjct: 196 ITMFSGCPNLESLVLVDYLFESATISAPRLENFKLCASHDMELTFPQVELLTPTLKAVNF 255

BLAST of HG10001817 vs. NCBI nr
Match: KAA0039267.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 7.5e-58
Identity = 135/310 (43.55%), Postives = 170/310 (54.84%), Query Frame = 0

Query: 11  EDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF-IDSY-------YD 70
           +DRISLLPD+LLHHILS+ NT+ VV+TC+LSK WKTLWT IP LNF  +S+       YD
Sbjct: 16  DDRISLLPDTLLHHILSSFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYD 75

Query: 71  ---------------------------------PQSDDA--------------------- 130
                                            P  D++                     
Sbjct: 76  DEESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCIN 135

Query: 131 -----IYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKWN-WDWEAEYGE 190
                IY+W YCF  C SL  LKMVCGF D+WG L LPSLKI+EI C W+  D  A Y  
Sbjct: 136 TYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDG 195

Query: 191 VEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLELLAPNLKSVKF 250
           + MFSGCPNLESLV +D+ F S  I AP+L+NF+LC S    LT P +ELL P LK+V F
Sbjct: 196 ITMFSGCPNLESLVLVDYLFESATISAPRLENFKLCASHDMELTFPQVELLTPTLKAVNF 255

Query: 251 SNILPIVTSALEFSCIHKVMIAIEDFTFSMGNDISISREEAGANFCEVLRVFYNATSFVL 253
            N+LP++ S  EFSCI KV I ++D  F+         +E  + F ++L V +NA+SF L
Sbjct: 256 VNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGS---QTQELKSKFIDLLSVLHNASSFTL 315

BLAST of HG10001817 vs. NCBI nr
Match: XP_022141791.1 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica charantia])

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-57
Identity = 135/312 (43.27%), Postives = 175/312 (56.09%), Query Frame = 0

Query: 4   VKKKKKMEDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF------- 63
           + KKKK+EDRISLLPD LL HILSN+NT+QVV+TCVLSK WKTLWT IP LNF       
Sbjct: 110 MSKKKKIEDRISLLPDCLLCHILSNINTKQVVQTCVLSKRWKTLWTSIPTLNFNFKSYPF 169

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 170 EEPSLNACRSKQSSFKNFIFRILSERCRTKIQKLSYTSSGNEDEVVLVELLICFARRHNV 229

Query: 124 ----IDSYYDPQSDDAIYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKW 183
               +D+YY      ++YDWKYC SAC SLTVLKMVCGF  +WG L LPSL+I+EI+ + 
Sbjct: 230 RELYLDTYY-----ISVYDWKYCLSACSSLTVLKMVCGFVADWGVLTLPSLRILEIEXE- 289

Query: 184 NWDWEAEYGEVEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLEL 243
           + + +A+Y  + MFSGCPNL+SLV +++ F S  ICAPKL+N  LC  ++   +   L  
Sbjct: 290 DCEDDADYKGIRMFSGCPNLKSLVLINYLFESATICAPKLENLVLCSGNELVFSEVELTC 349

Query: 244 LAPNLKSVKFSNILPIVTSALEFSCIHKVMIAIEDFTFSMGNDISISREEAGANFCEVLR 245
            + +L++V FSN+LP V SALEFSCI KV I + ++ FS GN      + A   F E+ R
Sbjct: 350 TS-SLRNVTFSNMLPTVNSALEFSCIQKVNIEVHNYQFSSGNGYFCQNKIAA--FSELFR 409

BLAST of HG10001817 vs. NCBI nr
Match: XP_038890213.1 (uncharacterized protein LOC120079853 [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-55
Identity = 135/326 (41.41%), Postives = 167/326 (51.23%), Query Frame = 0

Query: 3   IVKKKKKMEDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNFIDSYY- 62
           I K K   ED+IS +PD +LH ILS LNT+ VV+TCVLSK WK LWT IP LNF  + Y 
Sbjct: 340 IKKTKTNREDKISHVPDCVLHEILSTLNTKFVVQTCVLSKRWKNLWTHIPTLNFHYNIYS 399

Query: 63  --------DPQSDDAIYD------------------------------------------ 122
                   D +S    +                                           
Sbjct: 400 SLLSSKNEDEESKQRYFKYFIIRVLSKHCATNIQKLTYTSSGDEDELVLVEFLICYAGSH 459

Query: 123 ------------------WKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKW- 182
                             W YCFS C SL  LKM+CGF DNW  L LPSLK +EI   W 
Sbjct: 460 NVQQLCINATYIGVDDHVWNYCFSTCSSLIRLKMICGFVDNWAFLALPSLKFLEIQWDWL 519

Query: 183 NWDWEAEYGEVEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLEL 242
           +WD +A Y    MF GCPNLESLVF+D+ F S  I APKL+N ELC    + LT P +EL
Sbjct: 520 HWDEKANYNGTTMFPGCPNLESLVFVDYLFESATISAPKLENLELCSFSDFGLTFPEVEL 579

Query: 243 LAPNLKSVKFSNILPIVTSALEFSCIHKVMIAIEDFTFSMGNDISISREEAGANFCEVLR 259
             P LKSV F N+LPI+ S  EF CIHKV I +ED  F        ++++  +NF E+LR
Sbjct: 580 FTPILKSVNFINVLPILKSDSEFLCIHKVNIQLEDSVFEREYS-GPNKQKFNSNFGELLR 639

BLAST of HG10001817 vs. ExPASy Swiss-Prot
Match: Q8H1M0 (F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana OX=3702 GN=At2g26030 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-09
Identity = 68/238 (28.57%), Postives = 99/238 (41.60%), Query Frame = 0

Query: 12  DRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVL-------------NFID 71
           DRI  LPDSLL  +LS L T   V+T VLSK W+ LW R+PVL             +FID
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSDFPDENYASFID 63

Query: 72  SY---------------YDPQS--DDAIYDW-------------------KYC------- 131
           ++               YD  +  DD +  W                     C       
Sbjct: 64  NFLEFNRKSRMRKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFETNMCVREFMPQ 123

Query: 132 -FSACLSLTVLKMVCGFADNWGTLV-LPSLKIVEIDCKWNWDWEAEYGEVEMFSGCPNLE 185
               C +L  L +V    +N   +V LPSLKI+ ++  W +D      ++   SGCP LE
Sbjct: 124 NIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIMHLEDVWYYDDPLIMEKI--ISGCPVLE 183

BLAST of HG10001817 vs. ExPASy Swiss-Prot
Match: Q9FZ52 (F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana OX=3702 GN=At1g16930 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-09
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 4  VKKKKKMEDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNFIDSYYDP 63
          VK+K++  DRIS LPDSLL  ILS+L+T++ V T VLSK W+ LW  +PVL+ +DS   P
Sbjct: 7  VKEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLD-LDSNNFP 66

Query: 64 QSD 67
            D
Sbjct: 67 DDD 68

BLAST of HG10001817 vs. ExPASy Swiss-Prot
Match: Q6NKX3 (F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana OX=3702 GN=At2g04230 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.7e-09
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 11 EDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNFIDSYYDPQSDD 68
          EDRIS LPD+LL  ILS+L T+  + T VLSK W++LWT +P L F DS ++P  DD
Sbjct: 12 EDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKF-DSNFNPVFDD 67

BLAST of HG10001817 vs. ExPASy Swiss-Prot
Match: Q9LX51 (F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana OX=3702 GN=At3g59200 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 66/297 (22.22%), Postives = 119/297 (40.07%), Query Frame = 0

Query: 12  DRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNFIDSYYD---PQSDD- 71
           DRIS LP+ ++ HILS L T++   T VLSK W+ L+  +  L+F DS Y    P+SD  
Sbjct: 7   DRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKSDVE 66

Query: 72  -------------------------------------------------------AIYDW 131
                                                                  +I ++
Sbjct: 67  LSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELDLSILEY 126

Query: 132 KYCFSACLSLTVLKMVCGFADNW------GTLVLPSLKIVEIDCKWNWDWEAEYGEVEMF 191
                  +S T++++  G A++         + LP LK + IDC      E  +G V++ 
Sbjct: 127 PLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCV--DVQERGFGFVKLL 186

Query: 192 SGCPNLESLVFLDFSFSSVRICAPKLDNFE--LCISDQWFLTSPNLELLAPNLKSVKFSN 242
           SGCP LE LV ++  + + + C+  +   +      ++ +    ++    PNL  +++S+
Sbjct: 187 SGCPVLEELVLMNIGWENWKFCSVSVKTLKRLTFFCEETYENPKSVSFDTPNLVYLEYSD 246

BLAST of HG10001817 vs. ExPASy Swiss-Prot
Match: Q9FNJ1 (F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN=At5g22700 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 48/171 (28.07%), Postives = 81/171 (47.37%), Query Frame = 0

Query: 12  DRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF-IDSYYDPQSDDAIY 71
           DRIS LPD LL  ILSNL T+  V T +LS  W+++W   PVL+  ID++ D  +  +  
Sbjct: 6   DRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDIDIDAFDDATTFVSFA 65

Query: 72  DWKYCFSACLSLTVLKMVCGFADNWGTLVLP--------SLKIVEIDCKWNWDWEAEYGE 131
                FS    L   K+     D     ++P         ++ +E+DC++++ +EA Y  
Sbjct: 66  SRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCRFSFHFEAVY-- 125

Query: 132 VEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLELL 174
                        ++L  +  S+R+    L  +E       F++ PNL+++
Sbjct: 126 -----------LTLYLSETLVSLRLHFVTLHRYE-------FVSLPNLKVM 156

BLAST of HG10001817 vs. ExPASy TrEMBL
Match: A0A1S3CB41 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-58
Identity = 136/308 (44.16%), Postives = 169/308 (54.87%), Query Frame = 0

Query: 11  EDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF-IDSY-------YD 70
           +DRISLLPDSLLHHILS  NT+ VV+TC+LSK WKTLWT IP LNF  +S+       YD
Sbjct: 16  DDRISLLPDSLLHHILSTFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYD 75

Query: 71  ---------------------------------PQSDDA--------------------- 130
                                            P  D++                     
Sbjct: 76  DEESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCVN 135

Query: 131 -----IYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKWN-WDWEAEYGE 190
                IY+W YCF  C SL  LKMVCGF D+WG L LPSLKI+EI C W+  D  A Y  
Sbjct: 136 TYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDG 195

Query: 191 VEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLELLAPNLKSVKF 250
           + MFSGCPNLESLV +D+ F S  I AP+L+NF+LC S    LT P +ELL P LK+V F
Sbjct: 196 ITMFSGCPNLESLVLVDYLFESATISAPRLENFKLCASHDMELTFPQVELLTPTLKAVNF 255

BLAST of HG10001817 vs. ExPASy TrEMBL
Match: A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 3.6e-58
Identity = 135/310 (43.55%), Postives = 170/310 (54.84%), Query Frame = 0

Query: 11  EDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF-IDSY-------YD 70
           +DRISLLPD+LLHHILS+ NT+ VV+TC+LSK WKTLWT IP LNF  +S+       YD
Sbjct: 16  DDRISLLPDTLLHHILSSFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYD 75

Query: 71  ---------------------------------PQSDDA--------------------- 130
                                            P  D++                     
Sbjct: 76  DEESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCIN 135

Query: 131 -----IYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKWN-WDWEAEYGE 190
                IY+W YCF  C SL  LKMVCGF D+WG L LPSLKI+EI C W+  D  A Y  
Sbjct: 136 TYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDG 195

Query: 191 VEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLELLAPNLKSVKF 250
           + MFSGCPNLESLV +D+ F S  I AP+L+NF+LC S    LT P +ELL P LK+V F
Sbjct: 196 ITMFSGCPNLESLVLVDYLFESATISAPRLENFKLCASHDMELTFPQVELLTPTLKAVNF 255

Query: 251 SNILPIVTSALEFSCIHKVMIAIEDFTFSMGNDISISREEAGANFCEVLRVFYNATSFVL 253
            N+LP++ S  EFSCI KV I ++D  F+         +E  + F ++L V +NA+SF L
Sbjct: 256 VNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGS---QTQELKSKFIDLLSVLHNASSFTL 315

BLAST of HG10001817 vs. ExPASy TrEMBL
Match: A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 6.2e-58
Identity = 135/312 (43.27%), Postives = 175/312 (56.09%), Query Frame = 0

Query: 4   VKKKKKMEDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF------- 63
           + KKKK+EDRISLLPD LL HILSN+NT+QVV+TCVLSK WKTLWT IP LNF       
Sbjct: 110 MSKKKKIEDRISLLPDCLLCHILSNINTKQVVQTCVLSKRWKTLWTSIPTLNFNFKSYPF 169

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 170 EEPSLNACRSKQSSFKNFIFRILSERCRTKIQKLSYTSSGNEDEVVLVELLICFARRHNV 229

Query: 124 ----IDSYYDPQSDDAIYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKW 183
               +D+YY      ++YDWKYC SAC SLTVLKMVCGF  +WG L LPSL+I+EI+ + 
Sbjct: 230 RELYLDTYY-----ISVYDWKYCLSACSSLTVLKMVCGFVADWGVLTLPSLRILEIEXE- 289

Query: 184 NWDWEAEYGEVEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLEL 243
           + + +A+Y  + MFSGCPNL+SLV +++ F S  ICAPKL+N  LC  ++   +   L  
Sbjct: 290 DCEDDADYKGIRMFSGCPNLKSLVLINYLFESATICAPKLENLVLCSGNELVFSEVELTC 349

Query: 244 LAPNLKSVKFSNILPIVTSALEFSCIHKVMIAIEDFTFSMGNDISISREEAGANFCEVLR 245
            + +L++V FSN+LP V SALEFSCI KV I + ++ FS GN      + A   F E+ R
Sbjct: 350 TS-SLRNVTFSNMLPTVNSALEFSCIQKVNIEVHNYQFSSGNGYFCQNKIAA--FSELFR 409

BLAST of HG10001817 vs. ExPASy TrEMBL
Match: A0A6J1CJ18 (LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820 OS=Momordica charantia OX=3673 GN=LOC111012046 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-49
Identity = 124/278 (44.60%), Postives = 150/278 (53.96%), Query Frame = 0

Query: 1   MSIVKKKKKMEDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF-IDS 60
           MS  KKKK   DRISLLPDSLLH ILS LNT+QVV+TCVLSK WKTLWT IP LNF  DS
Sbjct: 1   MSSKKKKKTGLDRISLLPDSLLHSILSLLNTRQVVQTCVLSKRWKTLWTDIPTLNFDFDS 60

Query: 61  YYDPQ-----------------------------------------SDDAI--------- 120
           Y   Q                                         SDD +         
Sbjct: 61  YPFKQSIRNSSASNPKEPSFERFILRVLSEHGCKNIITLNFSCSRDSDDTVSLIEWLICY 120

Query: 121 -----------------YDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKW 180
                            Y+W    S C SL VLK+ CGF D+ G L   SL+I+EI+C W
Sbjct: 121 ASHVVQELCISTYKTIYYNWPCGLSTCSSLLVLKIKCGFVDDCGALKSASLRILEIECDW 180

Query: 181 NWDWEAEYGEVEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLEL 211
              ++ +Y E+EMFSGCPNLESLV +++ F S  I APKL+N ELC S       P +EL
Sbjct: 181 GDRYDRKYNEIEMFSGCPNLESLVLVNYLFDSATISAPKLENLELCAS------XPQVEL 240

BLAST of HG10001817 vs. ExPASy TrEMBL
Match: A0A1S3CBU6 (F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 119/308 (38.64%), Postives = 147/308 (47.73%), Query Frame = 0

Query: 11  EDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNF-IDSY-------YD 70
           +DRISLLPDSLLHHILS  NT+ VV+TC+LSK WKTLWT IP LNF  +S+       YD
Sbjct: 16  DDRISLLPDSLLHHILSTFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYD 75

Query: 71  ---------------------------------PQSDDA--------------------- 130
                                            P  D++                     
Sbjct: 76  DEESKRRSFKFFIFRVLSKHCATDIQKLTYTSSPNGDESVLVELLICYAGSHNVQQLCVN 135

Query: 131 -----IYDWKYCFSACLSLTVLKMVCGFADNWGTLVLPSLKIVEIDCKWN-WDWEAEYGE 190
                IY+W YCF  C SL  LKMVCGF D+WG L LPSLKI+EI C W+  D  A Y  
Sbjct: 136 TYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWSARDERANYDG 195

Query: 191 VEMFSGCPNLESLVFLDFSFSSVRICAPKLDNFELCISDQWFLTSPNLELLAPNLKSVKF 250
           + MFSGCPNLESLV +D+ F S  I AP+L+NF+LC S    LT P              
Sbjct: 196 ITMFSGCPNLESLVLVDYLFESATISAPRLENFKLCASHDMELTFP-------------- 255

BLAST of HG10001817 vs. TAIR 10
Match: AT3G52670.1 (FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein )

HSP 1 Score: 65.5 bits (158), Expect = 7.3e-11
Identity = 49/174 (28.16%), Postives = 79/174 (45.40%), Query Frame = 0

Query: 11  EDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNFIDSYYDPQSDD--- 70
           EDR++ LP+ L+  ILS L T+ V+ T VLSK W++LW  +P L F    Y+    D   
Sbjct: 9   EDRMNQLPEDLILRILSFLPTELVIATSVLSKQWRSLWKLVPNLEFDSDDYEINPVDIGL 68

Query: 71  --------------------AIYDWKYCFSACLSLTVLKMVCGF-ADNWGTLVLPSLKIV 130
                                 + +      C +L  LK++ G   D    ++L SL+ +
Sbjct: 69  WIGIAFARHLRELVLYVAPKQTFTFPSSLCICNTLETLKLILGIHVDIPCPVLLKSLRTL 128

Query: 131 EIDCKWNWDWEAEYGEVEMFSGCPNLESLVFLDFSFSSVR--ICAPKLDNFELC 159
            +D   +  ++ E     + S CP LE+LV  ++ ++ V   I  P L   E+C
Sbjct: 129 HLD---SVSYKDEESIRNLLSSCPILENLVVYEYWYNVVNFDIEVPSLKRLEIC 179

BLAST of HG10001817 vs. TAIR 10
Match: AT2G26030.1 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10
Identity = 68/238 (28.57%), Postives = 99/238 (41.60%), Query Frame = 0

Query: 12  DRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVL-------------NFID 71
           DRI  LPDSLL  +LS L T   V+T VLSK W+ LW R+PVL             +FID
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSDFPDENYASFID 63

Query: 72  SY---------------YDPQS--DDAIYDW-------------------KYC------- 131
           ++               YD  +  DD +  W                     C       
Sbjct: 64  NFLEFNRKSRMRKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFETNMCVREFMPQ 123

Query: 132 -FSACLSLTVLKMVCGFADNWGTLV-LPSLKIVEIDCKWNWDWEAEYGEVEMFSGCPNLE 185
               C +L  L +V    +N   +V LPSLKI+ ++  W +D      ++   SGCP LE
Sbjct: 124 NIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIMHLEDVWYYDDPLIMEKI--ISGCPVLE 183

BLAST of HG10001817 vs. TAIR 10
Match: AT2G26030.3 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10
Identity = 68/238 (28.57%), Postives = 99/238 (41.60%), Query Frame = 0

Query: 12  DRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVL-------------NFID 71
           DRI  LPDSLL  +LS L T   V+T VLSK W+ LW R+PVL             +FID
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSDFPDENYASFID 63

Query: 72  SY---------------YDPQS--DDAIYDW-------------------KYC------- 131
           ++               YD  +  DD +  W                     C       
Sbjct: 64  NFLEFNRKSRMRKFKLKYDEYTYDDDRLAGWVVTTVDRGIQHLDAKGFETNMCVREFMPQ 123

Query: 132 -FSACLSLTVLKMVCGFADNWGTLV-LPSLKIVEIDCKWNWDWEAEYGEVEMFSGCPNLE 185
               C +L  L +V    +N   +V LPSLKI+ ++  W +D      ++   SGCP LE
Sbjct: 124 NIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIMHLEDVWYYDDPLIMEKI--ISGCPVLE 183

BLAST of HG10001817 vs. TAIR 10
Match: AT1G16930.1 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0

Query: 4  VKKKKKMEDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNFIDSYYDP 63
          VK+K++  DRIS LPDSLL  ILS+L+T++ V T VLSK W+ LW  +PVL+ +DS   P
Sbjct: 7  VKEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLD-LDSNNFP 66

Query: 64 QSD 67
            D
Sbjct: 67 DDD 68

BLAST of HG10001817 vs. TAIR 10
Match: AT2G04230.1 (FBD, F-box and Leucine Rich Repeat domains containing protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-10
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 11 EDRISLLPDSLLHHILSNLNTQQVVRTCVLSKWWKTLWTRIPVLNFIDSYYDPQSDD 68
          EDRIS LPD+LL  ILS+L T+  + T VLSK W++LWT +P L F DS ++P  DD
Sbjct: 12 EDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKF-DSNFNPVFDD 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038890214.15.2e-5944.69F-box/LRR-repeat protein At3g26922-like [Benincasa hispida][more]
XP_008459617.13.4e-5844.16PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo][more]
KAA0039267.17.5e-5843.55F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat... [more]
XP_022141791.11.3e-5743.27LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica char... [more]
XP_038890213.12.7e-5541.41uncharacterized protein LOC120079853 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Q8H1M03.0e-0928.57F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana OX=3702 GN=At2g26... [more]
Q9FZ525.1e-0953.97F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana OX=3702 GN=At1g16... [more]
Q6NKX36.7e-0956.14F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana OX=3702 GN=At2g04... [more]
Q9LX511.9e-0822.22F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana OX=3702 GN=At3g59200 ... [more]
Q9FNJ11.6e-0728.07F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN=At5g22... [more]
Match NameE-valueIdentityDescription
A0A1S3CB411.6e-5844.16F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A5A7TCF13.6e-5843.55F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A6J1CKA96.2e-5843.27LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch... [more]
A0A6J1CJ181.8e-4944.60LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820 OS=Momordic... [more]
A0A1S3CBU61.1e-4338.64F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LO... [more]
Match NameE-valueIdentityDescription
AT3G52670.17.3e-1128.16FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [more]
AT2G26030.12.1e-1028.57F-box/RNI-like/FBD-like domains-containing protein [more]
AT2G26030.32.1e-1028.57F-box/RNI-like/FBD-like domains-containing protein [more]
AT1G16930.13.6e-1053.97F-box/RNI-like/FBD-like domains-containing protein [more]
AT2G04230.14.7e-1056.14FBD, F-box and Leucine Rich Repeat domains containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 13..53
e-value: 9.0E-5
score: 22.2
IPR001810F-box domainPROSITEPS50181FBOXcoord: 11..64
score: 8.914593
NoneNo IPR availableGENE3D1.20.1280.50coord: 1..68
e-value: 4.2E-7
score: 31.8
NoneNo IPR availablePANTHERPTHR32212CYCLIN-LIKE F-BOXcoord: 67..181
coord: 6..59
NoneNo IPR availablePANTHERPTHR32212:SF234F-BOX/RNI/FBD-LIKE DOMAIN PROTEINcoord: 67..181
coord: 6..59
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 11..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001817.1HG10001817.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding