HG10001720 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001720
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr09: 19823108 .. 19823344 (+)
RNA-Seq ExpressionHG10001720
SyntenyHG10001720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGGCTAATTGTTGCTACCATCGGAGATGTTACCACGGTCAGCTCTGGAGGCTTATTTTTGTTTTCTCTCATTCTTTTATCCATCTCTCTCATGTCAATGATAATATTTGCTTGCGGCCACTCCCTTGATCCTAGGAGGAGAAGAGGCGGAGACGATGGTGGTGGAGGCGATGGATGTGGTGGCTGTGGCGGTGGAGGTTGTGGCGGCGGAGGAGGTGGCGGCGGAGACTAA

mRNA sequence

ATGGGGAGGCTAATTGTTGCTACCATCGGAGATGTTACCACGGTCAGCTCTGGAGGCTTATTTTTGTTTTCTCTCATTCTTTTATCCATCTCTCTCATGTCAATGATAATATTTGCTTGCGGCCACTCCCTTGATCCTAGGAGGAGAAGAGGCGGAGACGATGGTGGTGGAGGCGATGGATGTGGTGGCTGTGGCGGTGGAGGTTGTGGCGGCGGAGGAGGTGGCGGCGGAGACTAA

Coding sequence (CDS)

ATGGGGAGGCTAATTGTTGCTACCATCGGAGATGTTACCACGGTCAGCTCTGGAGGCTTATTTTTGTTTTCTCTCATTCTTTTATCCATCTCTCTCATGTCAATGATAATATTTGCTTGCGGCCACTCCCTTGATCCTAGGAGGAGAAGAGGCGGAGACGATGGTGGTGGAGGCGATGGATGTGGTGGCTGTGGCGGTGGAGGTTGTGGCGGCGGAGGAGGTGGCGGCGGAGACTAA

Protein sequence

MGRLIVATIGDVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRRGGDDGGGGDGCGGCGGGGCGGGGGGGGD
Homology
BLAST of HG10001720 vs. NCBI nr
Match: KGN61189.1 (hypothetical protein Csa_006542 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 7.9e-11
Identity = 59/78 (75.64%), Postives = 62/78 (79.49%), Query Frame = 0

Query: 1  MGRLIVATIGDVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRRGGDDGGGGDG 60
          MGR I ATIGDVTT   GGL L SLILLSISL+SMIIFAC +  + RRRRGGDDGG G G
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAG-G 60

Query: 61 CGGCGGGGCGGGGGGGGD 79
          C  CGGGGCGGGG GGGD
Sbjct: 61 C-ACGGGGCGGGGCGGGD 76

BLAST of HG10001720 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 55/81 (67.90%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MGRLIVATIG------DVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRRGGDD 60
          MGR I+A  G      DVT VSSGGLFL S ILLSISL+SMIIFACG+S DP+R+ GG  
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60

Query: 61 GGGGDGCGGCG-GGGCGGGGG 75
           GGGDG GG G GGGCGG GG
Sbjct: 61 CGGGDGGGGGGCGGGCGGCGG 81

BLAST of HG10001720 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 1  MGRLIVAT----IGDVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRR---GGD 60
          MGR I A     +GDVT  SSGGL L + +LLS+SL+SMIIFACG S    +R+   GG 
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61 DGGGGDGCGG--CGGGGCGGGGGGGG 78
           GGGG GCGG   GGGGCGGGGGG G
Sbjct: 61 GGGGGGGCGGDVGGGGGCGGGGGGCG 86

BLAST of HG10001720 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 45/78 (57.69%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 1  MGRLIVAT----IGDVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRRGGDDGG 60
          MGR I A     +GDVT  SSGGL L + IL+S+SL+SMIIFACG S    +R+    GG
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGGG 60

Query: 61 GGDGCGGCGGGGCGGGGG 75
          G     GCGGGGCGGGGG
Sbjct: 61 G----AGCGGGGCGGGGG 74

BLAST of HG10001720 vs. ExPASy TrEMBL
Match: A0A0A0LJD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 59/78 (75.64%), Postives = 62/78 (79.49%), Query Frame = 0

Query: 1  MGRLIVATIGDVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRRGGDDGGGGDG 60
          MGR I ATIGDVTT   GGL L SLILLSISL+SMIIFAC +  + RRRRGGDDGG G G
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAG-G 60

Query: 61 CGGCGGGGCGGGGGGGGD 79
          C  CGGGGCGGGG GGGD
Sbjct: 61 C-ACGGGGCGGGGCGGGD 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61189.17.9e-1175.64hypothetical protein Csa_006542 [Cucumis sativus][more]
KAG6604774.11.1e-0767.90hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603228.12.5e-0460.47hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603229.14.2e-0457.69hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJD53.8e-1175.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420:SF5SUBFAMILY NOT NAMEDcoord: 11..78
NoneNo IPR availablePANTHERPTHR35420OS02G0198500 PROTEINcoord: 11..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001720.1HG10001720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane