HG10001677 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001677
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionBPI2 domain-containing protein
LocationChr09: 19400091 .. 19402550 (+)
RNA-Seq ExpressionHG10001677
SyntenyHG10001677
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTGTTCTACGCAACAGATGCGAAAAGTAGGGATGCATTTGTTCCTCCAAAGCCGAAGGAATTCGATAAAGCTACTCGAATCGGTATCTGTCTGGACGAGGTTAAAGGCATGAAATTCTCATCAAATATGGGATCTGGTTCCTTGAGATTAAGAGAGGGTGGGGCTACTCCCTGCAACAAAACAACACAGCAGCAGTTAGTTATGATTCAAATGTCTAGAAAGGGTACAACCATTTGATTAGTTCATAGTAAAAAGTGATGCTAATCCAGATACTCTTGCAATTGTAGATGTCAAGGAAAACAACAGCTAGAGAGACTGACATTAGCAATAAATTTAGGTCAATATAAACTTCACTGTTTGTAAAACTGTCCTCCCTGTCCAGAAAATGGAGGTAAAGAGACTTCTATAACTTGGTCCATATGTTTGACATGAAATCGTCCATGAGTTTTGTTAAAAGTATTGAATATAATTAAATTTACCCATCAACTTAAGCTTTTAGGTTGTGATTGGTGATTTTTATTAATATAATTAAGTTAAGCTTTAGGGTTGAGTAGTGATTTGACAAGTTTTCCTCCATTGAGAGATTTTAGAATTACAGGCACTACTAGAACACTCTCGTCATAATCGTCCCCATCCAGGAACTTGTAAAATTGAAAGAGCTAATCTTGCTTACAGTGTGTATGGCTAAAACAGAAAAAATTGCCTCAACAGCACCAGCTGCTCCAAGAAGATGACCAATTGCACCCTGAAATTCGAATTTCATTCATGTATACAAGTATGAAACATTTGCAAAAGACAATTGTACAAAGATGAGAAATTTGTACTGGTTGTGTGCATAACGTGTACCCAGTATTGTCATAAAAAGATATAAAGGAAGAGGAACTCCTTTCCAAAGTACAGGATGAGGATAATGTGTTAGAATAATCAACTTGTTCCAGATCATGAAACATCACTACATCAGGTATATTGTTCGTAGAAGAACAAAATCTTTGGTTCTAGTCAAAATTTTATCATTAATATATTGTAACAAATGCATTGTTTTGAGACAGGTAAATGCTCTAATTACACCAATGTTTCAAAACGCATTAGATTTTTTCTTCTTTTTTACACAAAGTGTACAATAACCCAAAATATGACATTTTTTCTTTCAAAATAAAAGAACATTAATCATAAATTACCTTCGTGGAGGAAAAAGCCAAAGCACCCGATAGTGCATGGTCAGTGAATACAGATTTTATAGCGGTTGCTTCCACTGCATCACCTAAATAAAAGACCCGGAAAGATAAATTACATGTATGTACATTTACAGAACATTGGCACATTTCTATAGTTACAGAAATCGCGCCCAAGCAACTTGTAAAAGATTCAAGATTTTACCCAAGGGTGTAGATGTAGCATGTGCATTTAGGTAATCCACTTGGCAGGGATGAAATCCAGACTGCAATTCATCAAAGTAAAAAAGAAACGGTACGTAATGTCATAAATTCATGTCACACCAAAGTGATCATCGAGTTAATCCTTGCAAGAGAGTTTTCACGGTAAATTTAGGCATCACATCTGCATGCACAAGCTTACGATTGACTGTTTGCATTCAGTAAAGAGATCTTAAGATTGCACTCACTCACATATTCAGTTATGAGATTTTATAAGATGCCATTTGAAGATTATATTTATATCAAGCCAGAGAGTATTCTATAAGTTAAGCTACAATTTTAATCTAGGAGATGGTGATAATATTAATTCGGAAGGATTGCCGGGCATCAGATTGCTCTCCAATTGAGGTATCCAAGACTGTAAAGGATCAAAAAAGTCCGAGCATTGAGGCCATAGAAATGCAATGTCAAGAAAGTCAATGCTGGGAATTTGAAATCAGGAGAACAGCACTGATTTAGAAGCAGAACAGAAGAATGGATCTCCAGGAGCAGTTGAATAAAAGATATTTCTATAAGAAGCAATGAAGATAGGATCTGGAAGCTACATTGGGCAACTTTAACAGGAGGTATTTCTTCAACTACCTATCTCATGAGAAGAACATCCTGGCTACCATACTCTGCAAAGTAATGAAGCATAGAGCCTAAACAAAATCAATTTCTAAGTGTGGTCTCTATGCTACGGAGAAGTCAACAGTAGAGACAGAATTCAGAAACCCACTCATATATCCAACTCTCTGTTAGATTGTGTTTCCTATGCAGGGAAGTCGATGAAACAGTGGATCATATTTTCTTAAACAGTGGATCTGTCACCCTTCAGTGGTATTTTTCTCATACTATGCAAAAGCCTTGGTGCAAGTCATGTGTCAAAAGAGAAGCAAATTCTGTGGACCAGTGCTACAGAACCTCTTCTTTGAGATTTATGATTGGCAAGAAAAAGAACATTGCCAGAGCATTTTGTAGACACCGACAACTTTTGGGAGATGGTGAATGTGTTATTGTCCAAATGGGGCTCTCTTTGTAA

mRNA sequence

ATGCATTTGTTCTACGCAACAGATGCGAAAAGTAGGGATGCATTTGTTCCTCCAAAGCCGAAGGAATTCGATAAAGCTACTCGAATCGGTATCTGTCTGGACGAGGTTAAAGGCATGAAATTCTCATCAAATATGGGATCTGGTTCCTTGAGATTAAGAGAGGGTGGGGCTACTCCCTGCAACAAAACAACACAGCAGCAGGAAGTCGATGAAACAGTGGATCATATTTTCTTAAACAGTGGATCTGTCACCCTTCAGTGGTATTTTTCTCATACTATGCAAAAGCCTTGGTGCAAGTCATGTGTCAAAAGAGAAGCAAATTCTGTGGACCAGTGCTACAGAACCTCTTCTTTGAGATTTATGATTGGCAAGAAAAAGAACATTGCCAGAGCATTTTGTAGACACCGACAACTTTTGGGAGATGGTGAATGTGTTATTGTCCAAATGGGGCTCTCTTTGTAA

Coding sequence (CDS)

ATGCATTTGTTCTACGCAACAGATGCGAAAAGTAGGGATGCATTTGTTCCTCCAAAGCCGAAGGAATTCGATAAAGCTACTCGAATCGGTATCTGTCTGGACGAGGTTAAAGGCATGAAATTCTCATCAAATATGGGATCTGGTTCCTTGAGATTAAGAGAGGGTGGGGCTACTCCCTGCAACAAAACAACACAGCAGCAGGAAGTCGATGAAACAGTGGATCATATTTTCTTAAACAGTGGATCTGTCACCCTTCAGTGGTATTTTTCTCATACTATGCAAAAGCCTTGGTGCAAGTCATGTGTCAAAAGAGAAGCAAATTCTGTGGACCAGTGCTACAGAACCTCTTCTTTGAGATTTATGATTGGCAAGAAAAAGAACATTGCCAGAGCATTTTGTAGACACCGACAACTTTTGGGAGATGGTGAATGTGTTATTGTCCAAATGGGGCTCTCTTTGTAA

Protein sequence

MHLFYATDAKSRDAFVPPKPKEFDKATRIGICLDEVKGMKFSSNMGSGSLRLREGGATPCNKTTQQQEVDETVDHIFLNSGSVTLQWYFSHTMQKPWCKSCVKREANSVDQCYRTSSLRFMIGKKKNIARAFCRHRQLLGDGECVIVQMGLSL
Homology
[Close]
BLAST of HG10001677 vs. NCBI nr
Match: MBA0802820.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 8   DAKSRDAFVPPKPKEFDKATRIGICLDEVKGMKFSSNMGSGSLRLREGGATPCNKTTQQ 67
           DAKS+DAFVPPKPKE D A  IGI L+ VKGMK S NMGSG +R    GA PCNKT  Q
Sbjct: 159 DAKSKDAFVPPKPKELDNAALIGISLEAVKGMKASLNMGSGLVRFSVKGAIPCNKTPLQ 217

[Close]
BLAST of HG10001677 vs. NCBI nr
Match: TXG55448.1 (hypothetical protein EZV62_020704 [Acer yangbiense])

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-10
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 10  KSRDAFVPPKPKEFDKATRIGICLDEVKGMKFSSNMGSGSLRLREGGATP 60
           KSR+AFVPPKPKEFDKAT IGI  + VKGMK S N+GSG LRL   GATP
Sbjct: 363 KSREAFVPPKPKEFDKATAIGISFEAVKGMKVSLNIGSGLLRLSVNGATP 412

[Close]
BLAST of HG10001677 vs. ExPASy TrEMBL
Match: A0A7J9GZ68 (BPI2 domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_013090 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.8e-12
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0 

Query: 8   DAKSRDAFVPPKPKEFDKATRIGICLDEVKGMKFSSNMGSGSLRLREGGATPCNKTTQQ 67
           DAKS+DAFVPPKPKE D A  IGI L+ VKGMK S NMGSG +R    GA PCNKT  Q
Sbjct: 159 DAKSKDAFVPPKPKELDNAALIGISLEAVKGMKASLNMGSGLVRFSVKGAIPCNKTPLQ 217

[Close]
BLAST of HG10001677 vs. ExPASy TrEMBL
Match: A0A5C7HFE2 (Lactamase_B domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020704 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 10  KSRDAFVPPKPKEFDKATRIGICLDEVKGMKFSSNMGSGSLRLREGGATP 60
           KSR+AFVPPKPKEFDKAT IGI  + VKGMK S N+GSG LRL   GATP
Sbjct: 363 KSREAFVPPKPKEFDKATAIGISFEAVKGMKVSLNIGSGLLRLSVNGATP 412

The following BLAST results are available for this feature:
BLAST of HG10001677 vs. NCBI nr
Match NameE-valueIdentityDescription
MBA0802820.11.4e-1167.80hypothetical protein [Gossypium harknessii][more]
TXG55448.14.5e-1074.00hypothetical protein EZV62_020704 [Acer yangbiense][more]
BLAST of HG10001677 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10001677 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J9GZ686.8e-1267.80BPI2 domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_013090 ... [more]
A0A5C7HFE22.2e-1074.00Lactamase_B domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_020... [more]
BLAST of HG10001677 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001677.1HG10001677.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane