HG10001642 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001642
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LOB domain-containing protein
Location	Chr09: 19040497 .. 19042749 (-)
RNA-Seq Expression	HG10001642
Synteny	HG10001642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGATCAGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAATTTGCTAGCGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGTTAGTAAGTCAAATTACGATTCTCTTAATTACACATTGTTTTTAGTTTAACGAAGTGGGAATTATTGAGGTGAGAAACTTTCGAATCTCTATCTTAACTAATTGAATTATACTCAGAGACAGTAAAAAGAATAGGTTTTAAAATTGTCTATGATAATATGAACAATGAACCAACAAACCTATTATCCTATTATCTCTACAAACCACACAAATTGACAAAAGAGCCCACATTAACTAACAAACAAAAGAAGAAAAAAAAAATTAGGGTTTCATAAAATTATTTTTCTTAATAAAAAAAATGACATGACACTCTCTTTTTCATTGGTGTTCCATCTTTTTCTTCAACTTTTTTCACTTTGATTATAAGCCACGACAAGATTAAACGTCTCCATCTCTCTCTTTCACACACTAATTAGTAATTTAGTACACTAATTATTAGTTACTATGGTAAAAAAAAAAAATACAGTTTCCTACTTTTTCAAAATTCACGCGTTTACAATTCAAACACAACTACAAGAAACTAATTATCCTACCTCCTACTTTATAATTCTCGAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCACGAGTTAAATTAGGATTAAATAATTAATGAAGAAGAGGATACATAAATTCAAATTTTAATAGAATGAGTTACTATTTAATAAAGTTGAATAATTAAATAAGAGGGTAATGTAAATGTTAGGTATATCTTTTATTTATTTCCGTTATAGTGGTTAATTACAGTTGAGGAGCCCACCTTTAAGCCAAAAAAATAATAATAATAAATAAATAAAAATAAAAGCTAAGTGTCTCAAATATTTTTACTTTTTGAAAAAGCAAACCCCAAAATTGGTTGGACGACCAATTCAGGAGATTCCTTAGCGTATGAAAGAGTAAAGGGCATCGTTTAATTTGTACTAAATAATTAATCACATCCTGCTTTAATTAACCATAGCCTTTGGTTAATTAGCACACTTAACTAAACCAAAGTATAGTTTATGTTTTAATTAATTATTTAATCCCCTCAACTTTAGCCCCATTAGGCTTATAGCTTTTGGGGAAATTACAAGATCAACCTGAACTTTTTTTTCCTTTTTTTTTTTTCGCTAGCTCCAAAAGAAAGGTAAGATTCTAAATGTTTTGATTTATTTCACTATCATAAATCAATATTATTTGTGTCATTCTAACGTCACAATGACATCTAAAATCCTTTCTTCATATAAAAGTAATATCAATAGTTGGTATAGGTACGTTTCTTTTAAATATTGTAATAACTAATAAAATATACTGTGCGTACATTCATCTTTCTGCAATTGTGATCACTTAATAGTTCAATAACAATTTATCACGTAATAAACTTATGTTATTTTCTTAATGTGATTGAAGGGACTGCAAGAAGATAGGTGCAGTTTAAGTATTACTCCTTACTAATATCATATAGGGTTTCATCTCAAACGTAATTGGCAAGAGAAGATTTTCAACAAGTTCTTCAAGATGGTGTCTCTTTGAGTTCATCATTTTTCAGTTGAATTTTTTTTTATTTGACCGAACATCCGTATGAGATTAATGGACTCTGATATCATATTAGATAAATATAAAGTTACATCTTAAAACTAATTGACTAGGAGTAGAGTAATCGTGTATCTTATAAAGATGGTGAGGTTTCTCTATATTTCCAATGAGTTATATTCATATTGAGTTTATTGATTAATAGGAGCTACCAGAGCAGCAACGAAGCGATGCAGTCAGCTCGATGGTGTACGAGGCAAACGCAAGGGTACGAGATCCAGTATACGGCTGCGTTGGAGCCATATCATCGCTACAACAACAAATCGATCTCTTGCAAACACAATTGGCAATAGCACAGGCGGAGGTGGTTCACATGCGGATGCGCCAATTCCCGTCATCCTCCTGCAACCCAATCGCTGGCCACTCGCCGGAAACCGCCTCACCCTCCGGCAAGATGAACATTCCGGCTCCAAACAAGTCCTATTTTTCTATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG

mRNA sequence

ATGAAGGAGATCAGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAATTTGCTAGCGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAGCAACGAAGCGATGCAGTCAGCTCGATGGTGTACGAGGCAAACGCAAGGGTACGAGATCCAGTATACGGCTGCGTTGGAGCCATATCATCGCTACAACAACAAATCGATCTCTTGCAAACACAATTGGCAATAGCACAGGCGGAGGTGGTTCACATGCGGATGCGCCAATTCCCGTCATCCTCCTGCAACCCAATCGCTGGCCACTCGCCGGAAACCGCCTCACCCTCCGGCAAGATGAACATTCCGGCTCCAAACAAGTCCTATTTTTCTATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG

Coding sequence (CDS)

ATGAAGGAGATCAGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGCGTTTTCGCCCCTTATTTCCCCGCCGACGAGCCTCATAAATTTGCTAGCGTTCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAGCAACGAAGCGATGCAGTCAGCTCGATGGTGTACGAGGCAAACGCAAGGGTACGAGATCCAGTATACGGCTGCGTTGGAGCCATATCATCGCTACAACAACAAATCGATCTCTTGCAAACACAATTGGCAATAGCACAGGCGGAGGTGGTTCACATGCGGATGCGCCAATTCCCGTCATCCTCCTGCAACCCAATCGCTGGCCACTCGCCGGAAACCGCCTCACCCTCCGGCAAGATGAACATTCCGGCTCCAAACAAGTCCTATTTTTCTATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG

Protein sequence

MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC

Homology

[Close]

BLAST of HG10001642 vs. NCBI nr
Match: XP_038902133.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 340.9 bits (873), Expect = 6.5e-90
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEI+GRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEINGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQFPSSSCN   GHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC
Sbjct: 121 RQFPSSSCNLTIGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173

[Close]

BLAST of HG10001642 vs. NCBI nr
Match: XP_004150042.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical protein Csa_020952 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 7.2e-89
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           R FPSSS NP AGHSPETASPS KMNIPAPNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of HG10001642 vs. NCBI nr
Match: KAA0054642.1 (LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB domain-containing protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.3e-86
Identity = 163/173 (94.22%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           R  PSSS NP  GHS ETASPS KMNIP PNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of HG10001642 vs. NCBI nr
Match: XP_022149611.1 (LOB domain-containing protein 4 [Momordica charantia])

HSP 1 Score: 301.2 bits (770), Expect = 5.7e-78
Identity = 155/173 (89.60%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQFPS+S  P A HSPETA   GK+NIPA NKS+F+MDMV HDNMGESLWSSC
Sbjct: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of HG10001642 vs. NCBI nr
Match: XP_022947417.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_022970811.1 LOB domain-containing protein 4-like [Cucurbita maxima] >KAG6604717.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034846.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.5 bits (763), Expect = 3.7e-77
Identity = 155/173 (89.60%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQF SSS NP AGHSPETASPSGK+NIP  NKSYFSM     DNMGESLWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of HG10001642 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.5e-60
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE S RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 RQFPSSSCNPIAGHSPETA-SPSGKMNIPAPNKSYFS-MDMVDHDNMGESLWS 172
           RQ  +   + +   SP ++ SPS K   P  NK  FS MD+VD  ++GES+WS
Sbjct: 121 RQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of HG10001642 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.6e-44
Identity = 95/170 (55.88%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R     
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH-- 124

Query: 126 SSSCNPIAGHSPETASPSGKMNIPAPNKSYFS---MDMVDHDNMGESLWS 172
                    H+      +  +  P+ NK ++S   M +   D+ G+ LWS
Sbjct: 125 -------RIHTKPPPYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of HG10001642 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 7.3e-44
Identity = 84/116 (72.41%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M+  P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of HG10001642 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-39
Identity = 73/111 (65.77%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ 123
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R+
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE 152

[Close]

BLAST of HG10001642 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-37
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ 123
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ ++
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

[Close]

BLAST of HG10001642 vs. ExPASy TrEMBL
Match: A0A0A0KBA8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.5e-89
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           R FPSSS NP AGHSPETASPS KMNIPAPNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of HG10001642 vs. ExPASy TrEMBL
Match: A0A5D3CBA3 (LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00510 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.6e-86
Identity = 163/173 (94.22%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           R  PSSS NP  GHS ETASPS KMNIP PNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of HG10001642 vs. ExPASy TrEMBL
Match: A0A6J1D8X3 (LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 155/173 (89.60%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQFPS+S  P A HSPETA   GK+NIPA NKS+F+MDMV HDNMGESLWSSC
Sbjct: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of HG10001642 vs. ExPASy TrEMBL
Match: A0A6J1I1K8 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 155/173 (89.60%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQF SSS NP AGHSPETASPSGK+NIP  NKSYFSM     DNMGESLWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of HG10001642 vs. ExPASy TrEMBL
Match: A0A6J1G6E3 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451283 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 155/173 (89.60%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RQFPSSSCNPIAGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQF SSS NP AGHSPETASPSGK+NIP  NKSYFSM     DNMGESLWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of HG10001642 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-61
Identity = 125/173 (72.25%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE S RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 RQFPSSSCNPIAGHSPETA-SPSGKMNIPAPNKSYFS-MDMVDHDNMGESLWS 172
           RQ  +   + +   SP ++ SPS K   P  NK  FS MD+VD  ++GES+WS
Sbjct: 121 RQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of HG10001642 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 178.7 bits (452), Expect = 4.0e-45
Identity = 95/170 (55.88%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R     
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLH-- 124

Query: 126 SSSCNPIAGHSPETASPSGKMNIPAPNKSYFS---MDMVDHDNMGESLWS 172
                    H+      +  +  P+ NK ++S   M +   D+ G+ LWS
Sbjct: 125 -------RIHTKPPPYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of HG10001642 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 178.3 bits (451), Expect = 5.2e-45
Identity = 84/116 (72.41%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M+  P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of HG10001642 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 162.9 bits (411), Expect = 2.3e-40
Identity = 73/111 (65.77%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ 123
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R+
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE 152

[Close]

BLAST of HG10001642 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-38
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ 123
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ ++
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

The following BLAST results are available for this feature:

BLAST of HG10001642 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902133.1	6.5e-90	97.11	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
XP_004150042.1	7.2e-89	96.53	LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical prote...	[more]
KAA0054642.1	3.3e-86	94.22	LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB ...	[more]
XP_022149611.1	5.7e-78	89.60	LOB domain-containing protein 4 [Momordica charantia]	[more]
XP_022947417.1	3.7e-77	89.60	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_022970811.1 LOB do...	[more]

BLAST of HG10001642 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	2.5e-60	72.25	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SA51	5.6e-44	55.88	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8LBW3	7.3e-44	72.41	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q8L5T5	3.2e-39	65.77	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q9LQR0	5.1e-37	67.27	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]

BLAST of HG10001642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBA8	3.5e-89	96.53	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV...	[more]
A0A5D3CBA3	1.6e-86	94.22	LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1D8X3	2.8e-78	89.60	LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 P...	[more]
A0A6J1I1K8	1.8e-77	89.60	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678...	[more]
A0A6J1G6E3	1.8e-77	89.60	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]

BLAST of HG10001642 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	1.8e-61	72.25	LOB domain-containing protein 4	[more]
AT1G16530.1	4.0e-45	55.88	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G30130.1	5.2e-45	72.41	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	2.3e-40	65.77	LOB domain-containing protein 15	[more]
AT1G07900.1	3.6e-38	67.27	LOB domain-containing protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..114
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 3..169
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 3..169
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 15..112 e-value: 1.0E-43 score: 147.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 14..115 score: 27.38965

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001642.1	HG10001642.1	mRNA