HG10001637 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001637
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionauxin-responsive protein SAUR71
LocationChr09: 18959376 .. 18960043 (-)
RNA-Seq ExpressionHG10001637
SyntenyHG10001637
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCAGCTCATTCGCCGTCTCTCCCGTGTCGCCGACTCCTCCCAATCCCACTACTGCCTCCTCCGCACCGCCGACGCCGCTCAACGCCCCGGCCGTGCTCACTCCTTCCGCGCCGCCGCCGCCAGTAAATTCCGTCGCTCCAGATCGGAAGGTGCCGTTCCGGTTCCCCAAGGCCACGTCCCGGTCTACGTCGGCGACGAGATGGAACGGTTCGCTGTGAGCGCCGAGTTACTGAACCATCCCGTTTTCGTAACTTTACTGGAGAAATCAGCTCAAGAGTACGGTTATGAACAGAAAGGAGTCCTTCGAATCCCCTGTCACGTGCTGGTCTTCGAACGAGTACTTGAAGCTATCAGAATCGGCGACCACGACTCACGTGACCTCCACGATCTTCTCTCTTCTCTCTCCGGCGATTTCCTCTAAGTTTCGTCTCATGAATTCCCCCTTTTCTTGTTTAGTTTTTTTTTTTTTTAAAATTTTTCCCTTTCTTTGTAGACATCGACGAATGGATAGATCGTCTTCTTGGTTTTGATGTAAATATAAAACACCCTTCCTTCGGAGAAGACGATACGAGATTTGTACTTTTTTGTTTTGGGAAGGATGAATTTGATACTCCATGGATTAAATTGGACTCTGAAAATACTGAAATCGAATCGGAATTTTGA

mRNA sequence

ATGAAGCAGCTCATTCGCCGTCTCTCCCGTGTCGCCGACTCCTCCCAATCCCACTACTGCCTCCTCCGCACCGCCGACGCCGCTCAACGCCCCGGCCGTGCTCACTCCTTCCGCGCCGCCGCCGCCAGTAAATTCCGTCGCTCCAGATCGGAAGACATCGACGAATGGATAGATCGTCTTCTTGGTTTTGATGTAAATATAAAACACCCTTCCTTCGGAGAAGACGATACGAGATTTGTACTTTTTTGTTTTGGGAAGGATGAATTTGATACTCCATGGATTAAATTGGACTCTGAAAATACTGAAATCGAATCGGAATTTTGA

Coding sequence (CDS)

ATGAAGCAGCTCATTCGCCGTCTCTCCCGTGTCGCCGACTCCTCCCAATCCCACTACTGCCTCCTCCGCACCGCCGACGCCGCTCAACGCCCCGGCCGTGCTCACTCCTTCCGCGCCGCCGCCGCCAGTAAATTCCGTCGCTCCAGATCGGAAGACATCGACGAATGGATAGATCGTCTTCTTGGTTTTGATGTAAATATAAAACACCCTTCCTTCGGAGAAGACGATACGAGATTTGTACTTTTTTGTTTTGGGAAGGATGAATTTGATACTCCATGGATTAAATTGGACTCTGAAAATACTGAAATCGAATCGGAATTTTGA

Protein sequence

MKQLIRRLSRVADSSQSHYCLLRTADAAQRPGRAHSFRAAAASKFRRSRSEDIDEWIDRLLGFDVNIKHPSFGEDDTRFVLFCFGKDEFDTPWIKLDSENTEIESEF
Homology
BLAST of HG10001637 vs. NCBI nr
Match: XP_038901919.1 (auxin-responsive protein SAUR71 [Benincasa hispida])

HSP 1 Score: 87.4 bits (215), Expect = 8.0e-14
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLLRTAD--AAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQSHYCLLR  D  AAQRPGRAHSFRAAAA+KFRRSRSE
Sbjct: 1  MKQLIRRLSRVADSSQSHYCLLRPTDAVAAQRPGRAHSFRAAAANKFRRSRSE 53

BLAST of HG10001637 vs. NCBI nr
Match: XP_004150039.1 (auxin-responsive protein SAUR71 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 6.8e-13
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLLRTADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQSHYCLLRT D  QRP RAHSFRAAAA+KFRRSRSE
Sbjct: 1  MKQLIRRLSRVADSSQSHYCLLRTPD--QRPARAHSFRAAAANKFRRSRSE 49

BLAST of HG10001637 vs. NCBI nr
Match: XP_022970846.1 (auxin-responsive protein SAUR71-like [Cucurbita maxima])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLL--RTADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQSHYCLL   +A AA+RPGRAHSFRAAAA+KFRRSRSE
Sbjct: 1  MKQLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSE 53

BLAST of HG10001637 vs. NCBI nr
Match: XP_008456308.1 (PREDICTED: auxin-responsive protein SAUR71 [Cucumis melo] >KAA0054653.1 auxin-responsive protein SAUR71 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLLRTADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQSHYCLLRT D  QRP RAHSFRAAAA+KFRRSRS+
Sbjct: 1  MKQLIRRLSRVADSSQSHYCLLRTPD--QRPARAHSFRAAAANKFRRSRSD 49

BLAST of HG10001637 vs. NCBI nr
Match: KAG6570587.1 (Auxin-responsive protein SAUR72, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 5.7e-12
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLLRT--ADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQS YCLLRT  + AA+RPGRAHSFRAAAASKFRRSR E
Sbjct: 1  MKQLIRRLSRVADSSQSSYCLLRTDSSAAARRPGRAHSFRAAAASKFRRSRPE 53

BLAST of HG10001637 vs. ExPASy TrEMBL
Match: A0A0A0KGB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G137590 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLLRTADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQSHYCLLRT D  QRP RAHSFRAAAA+KFRRSRSE
Sbjct: 1  MKQLIRRLSRVADSSQSHYCLLRTPD--QRPARAHSFRAAAANKFRRSRSE 49

BLAST of HG10001637 vs. ExPASy TrEMBL
Match: A0A6J1I1P2 (auxin-responsive protein SAUR71-like OS=Cucurbita maxima OX=3661 GN=LOC111469701 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.3e-13
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLL--RTADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQSHYCLL   +A AA+RPGRAHSFRAAAA+KFRRSRSE
Sbjct: 1  MKQLIRRLSRVADSSQSHYCLLHSHSAAAARRPGRAHSFRAAAANKFRRSRSE 53

BLAST of HG10001637 vs. ExPASy TrEMBL
Match: A0A5A7UFB2 (Auxin-responsive protein SAUR71 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004690 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.3e-13
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLLRTADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQSHYCLLRT D  QRP RAHSFRAAAA+KFRRSRS+
Sbjct: 1  MKQLIRRLSRVADSSQSHYCLLRTPD--QRPARAHSFRAAAANKFRRSRSD 49

BLAST of HG10001637 vs. ExPASy TrEMBL
Match: A0A1S3C2X3 (auxin-responsive protein SAUR71 OS=Cucumis melo OX=3656 GN=LOC103496295 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.3e-13
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLLRTADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQSHYCLLRT D  QRP RAHSFRAAAA+KFRRSRS+
Sbjct: 1  MKQLIRRLSRVADSSQSHYCLLRTPD--QRPARAHSFRAAAANKFRRSRSD 49

BLAST of HG10001637 vs. ExPASy TrEMBL
Match: A0A6J1JC90 (auxin-responsive protein SAUR71-like OS=Cucurbita maxima OX=3661 GN=LOC111483728 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.8e-12
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0

Query: 1  MKQLIRRLSRVADSSQSHYCLLRT--ADAAQRPGRAHSFRAAAASKFRRSRSE 52
          MKQLIRRLSRVADSSQS YCLLRT  + AA+RPGRAHSFRAAAASKFRRSR E
Sbjct: 1  MKQLIRRLSRVADSSQSSYCLLRTDSSAAARRPGRAHSFRAAAASKFRRSRPE 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038901919.18.0e-1490.57auxin-responsive protein SAUR71 [Benincasa hispida][more]
XP_004150039.16.8e-1390.20auxin-responsive protein SAUR71 [Cucumis sativus][more]
XP_022970846.11.5e-1286.79auxin-responsive protein SAUR71-like [Cucurbita maxima][more]
XP_008456308.11.5e-1288.24PREDICTED: auxin-responsive protein SAUR71 [Cucumis melo] >KAA0054653.1 auxin-re... [more]
KAG6570587.15.7e-1286.79Auxin-responsive protein SAUR72, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGB43.3e-1390.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G137590 PE=3 SV=1[more]
A0A6J1I1P27.3e-1386.79auxin-responsive protein SAUR71-like OS=Cucurbita maxima OX=3661 GN=LOC111469701... [more]
A0A5A7UFB27.3e-1388.24Auxin-responsive protein SAUR71 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A1S3C2X37.3e-1388.24auxin-responsive protein SAUR71 OS=Cucumis melo OX=3656 GN=LOC103496295 PE=3 SV=... [more]
A0A6J1JC902.8e-1286.79auxin-responsive protein SAUR71-like OS=Cucurbita maxima OX=3661 GN=LOC111483728... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001637.1HG10001637.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin