HG10001617 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001617
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
Location	Chr09: 18693656 .. 18694873 (+)
RNA-Seq Expression	HG10001617
Synteny	HG10001617

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAGAACACCAACAAGAATCCCGATTCTTCAACCTTAGATGCGGAAGCATCATCTTTCTCCCCTCAATTCATCAACCAACAATTAACTCTTGTAAAAACTTCTCAAGAAAACTTAAACGTGAAATTACTTGAAGTTCAAACCAATATGGTTAGAATCATGGCCACAAATTTGCGCATCCAACAAGTTGTAGAAAATCTTATCCAAAAAGTGAGAAAGATTCCAAATGTTGCAACTCCAAATAATACCATCCCTATCCAAGAACAAGACCATAACTTTCCGCACAATCAAGAACAACACGACAATTCAATCCACGTCCAAGAATGTGGAAATTTTCATCAAGATTTTCACGGGCGTGATCAAGAAAATTGCCAAGAAAATCATAGACAACCAATTCAACCTCCAAGAAGACTAGAAATTCATAATCAAGAAAATCCAAGAATGCAAGAAGTAGCAAGAAGTCCACCAAGACGCTTCATCCAAAGAAATCAACCGTGCATGAACAATTATAATCCAGTTTTTGAAAAACATCTTCCTCCTCATATACCTTTTCTTCAAAATGTGGTTGGGTTTGATTCTGAAACATCAAAAGAAGAAGTTGGTTGGCAAGGTTTTTCTCGGTTTTCATATCAAAATCATGAGCAACAACATCAATTCAAGAATGTCAAAGAATGGGTTCGAGAATCGTTTCAAGATCAAACGGGCATTCAACCAAATGTTCAAAAACATGTTGTCCTTCAAGAACATCAAGGCAACCCACATCGAGTCCAAAATCGAGTGGCCACGTTGCAAGAACATCAAGATAGGAGTACAAATTTTAATGTTCTAGCCTGTTATTTGACTATGCTCCCAATGGAACCAATTCTGATCGTTGTTGCTCATCTCAATGTGAGAAACCCTTCTATAAGGCCATTTAAGAAGAAGGATGTTGTCGATAATGCAAAATCTCAATTTTCACAAAATCATAGTGATCACCCTGTTATTATTCGGGCCTGTGGGGGACGGAAAGAAGTTGAGAAGAACTTTGGTGGATATGACATCTATTGCAAGAACATTCTTTCTGTAGAATCAGTGAGGATTATTGATTCACTAAGGAAAGAGTTCTTTTTTTTGCTTAAAGATATTGGCTTGGTCAACGGGTATTTGAACACCTACAACGCTTGGAGTCTTGATGAACTTGATAAAAAAATTTATGTCTTGGAGTTTTTTTCATAA

mRNA sequence

ATGATCAAGAACACCAACAAGAATCCCGATTCTTCAACCTTAGATGCGGAAGCATCATCTTTCTCCCCTCAATTCATCAACCAACAATTAACTCTTGTAAAAACTTCTCAAGAAAACTTAAACGTGAAATTACTTGAAGTTCAAACCAATATGGTTAGAATCATGGCCACAAATTTGCGCATCCAACAAGTTGTAGAAAATCTTATCCAAAAAGTGAGAAAGATTCCAAATGTTGCAACTCCAAATAATACCATCCCTATCCAAGAACAAGACCATAACTTTCCGCACAATCAAGAACAACACGACAATTCAATCCACGTCCAAGAATGTGGAAATTTTCATCAAGATTTTCACGGGCGTGATCAAGAAAATTGCCAAGAAAATCATAGACAACCAATTCAACCTCCAAGAAGACTAGAAATTCATAATCAAGAAAATCCAAGAATGCAAGAAGTAGCAAGAAGTCCACCAAGACGCTTCATCCAAAGAAATCAACCGTGCATGAACAATTATAATCCAGTTTTTGAAAAACATCTTCCTCCTCATATACCTTTTCTTCAAAATGTGGTTGGGTTTGATTCTGAAACATCAAAAGAAGAAGTTGGTTGGCAAGGTTTTTCTCGGTTTTCATATCAAAATCATGAGCAACAACATCAATTCAAGAATGTCAAAGAATGGGTTCGAGAATCGTTTCAAGATCAAACGGGCATTCAACCAAATGTTCAAAAACATGTTGTCCTTCAAGAACATCAAGGCAACCCACATCGAGTCCAAAATCGAGTGGCCACGTTGCAAGAACATCAAGATAGGAGTACAAATTTTAATGTTCTAGCCTGTTATTTGACTATGCTCCCAATGGAACCAATTCTGATCGTTGTTGCTCATCTCAATGTGAGAAACCCTTCTATAAGGCCATTTAAGAAGAAGGATGTTGTCGATAATGCAAAATCTCAATTTTCACAAAATCATAGTGATCACCCTGTTATTATTCGGGCCTGTGGGGGACGGAAAGAAGTTGAGAAGAACTTTGGTGGATATGACATCTATTGCAAGAACATTCTTTCTGTAGAATCAGTGAGGATTATTGATTCACTAAGGAAAGAGTTCTTTTTTTTGCTTAAAGATATTGGCTTGGTCAACGGGTATTTGAACACCTACAACGCTTGGAGTCTTGATGAACTTGATAAAAAAATTTATGTCTTGGAGTTTTTTTCATAA

Coding sequence (CDS)

ATGATCAAGAACACCAACAAGAATCCCGATTCTTCAACCTTAGATGCGGAAGCATCATCTTTCTCCCCTCAATTCATCAACCAACAATTAACTCTTGTAAAAACTTCTCAAGAAAACTTAAACGTGAAATTACTTGAAGTTCAAACCAATATGGTTAGAATCATGGCCACAAATTTGCGCATCCAACAAGTTGTAGAAAATCTTATCCAAAAAGTGAGAAAGATTCCAAATGTTGCAACTCCAAATAATACCATCCCTATCCAAGAACAAGACCATAACTTTCCGCACAATCAAGAACAACACGACAATTCAATCCACGTCCAAGAATGTGGAAATTTTCATCAAGATTTTCACGGGCGTGATCAAGAAAATTGCCAAGAAAATCATAGACAACCAATTCAACCTCCAAGAAGACTAGAAATTCATAATCAAGAAAATCCAAGAATGCAAGAAGTAGCAAGAAGTCCACCAAGACGCTTCATCCAAAGAAATCAACCGTGCATGAACAATTATAATCCAGTTTTTGAAAAACATCTTCCTCCTCATATACCTTTTCTTCAAAATGTGGTTGGGTTTGATTCTGAAACATCAAAAGAAGAAGTTGGTTGGCAAGGTTTTTCTCGGTTTTCATATCAAAATCATGAGCAACAACATCAATTCAAGAATGTCAAAGAATGGGTTCGAGAATCGTTTCAAGATCAAACGGGCATTCAACCAAATGTTCAAAAACATGTTGTCCTTCAAGAACATCAAGGCAACCCACATCGAGTCCAAAATCGAGTGGCCACGTTGCAAGAACATCAAGATAGGAGTACAAATTTTAATGTTCTAGCCTGTTATTTGACTATGCTCCCAATGGAACCAATTCTGATCGTTGTTGCTCATCTCAATGTGAGAAACCCTTCTATAAGGCCATTTAAGAAGAAGGATGTTGTCGATAATGCAAAATCTCAATTTTCACAAAATCATAGTGATCACCCTGTTATTATTCGGGCCTGTGGGGGACGGAAAGAAGTTGAGAAGAACTTTGGTGGATATGACATCTATTGCAAGAACATTCTTTCTGTAGAATCAGTGAGGATTATTGATTCACTAAGGAAAGAGTTCTTTTTTTTGCTTAAAGATATTGGCTTGGTCAACGGGTATTTGAACACCTACAACGCTTGGAGTCTTGATGAACTTGATAAAAAAATTTATGTCTTGGAGTTTTTTTCATAA

Protein sequence

MIKNTNKNPDSSTLDAEASSFSPQFINQQLTLVKTSQENLNVKLLEVQTNMVRIMATNLRIQQVVENLIQKVRKIPNVATPNNTIPIQEQDHNFPHNQEQHDNSIHVQECGNFHQDFHGRDQENCQENHRQPIQPPRRLEIHNQENPRMQEVARSPPRRFIQRNQPCMNNYNPVFEKHLPPHIPFLQNVVGFDSETSKEEVGWQGFSRFSYQNHEQQHQFKNVKEWVRESFQDQTGIQPNVQKHVVLQEHQGNPHRVQNRVATLQEHQDRSTNFNVLACYLTMLPMEPILIVVAHLNVRNPSIRPFKKKDVVDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFFLLKDIGLVNGYLNTYNAWSLDELDKKIYVLEFFS

Homology

[Close]

BLAST of HG10001617 vs. NCBI nr
Match: XP_038892223.1 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-35
Identity = 86/142 (60.56%), Postives = 99/142 (69.72%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKDV
Sbjct: 748 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDV 807

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+NFGGYD   KN LSV+S++ IDSLRKEFF 
Sbjct: 808 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNFGGYDFCWKNFLSVQSMKAIDSLRKEFFS 867

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 868 LLRDTGLVDGYSDTYNAWSLDE 889

[Close]

BLAST of HG10001617 vs. NCBI nr
Match: XP_008446653.1 (PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-34
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKD 
Sbjct: 798 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDA 857

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 858 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 917

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 918 LLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of HG10001617 vs. NCBI nr
Match: TYK09146.1 (DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-34
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKD 
Sbjct: 719 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDA 778

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 779 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 838

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 839 LLRDTGLVDGYSDTYNAWSLDE 860

[Close]

BLAST of HG10001617 vs. NCBI nr
Match: KAA0034595.1 (DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-34
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKD 
Sbjct: 748 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDA 807

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 808 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 867

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 868 LLRDTGLVDGYSDTYNAWSLDE 889

[Close]

BLAST of HG10001617 vs. NCBI nr
Match: XP_008446652.1 (PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-34
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKD 
Sbjct: 798 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDA 857

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 858 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 917

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 918 LLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of HG10001617 vs. ExPASy Swiss-Prot
Match: F4IM84 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g01130 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-22
Identity = 63/138 (45.65%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 261 VATLQEHQDRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSI 320
           +  L E++D +T    L  YL+ LPME                 PIL V A L+VR+P +
Sbjct: 688 IGALDENEDLTT----LGRYLSKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFL 747

Query: 321 RPFKKKDVVDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIID 380
            P  KKD+ + AKSQFS++HSDH  ++RA  G K+ E+    YD   KN LS++S+R ID
Sbjct: 748 TPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQSLRAID 807

Query: 381 SLRKEFFFLLKDIGLVNG 382
           SLRKEFF LLKD GL++G
Sbjct: 808 SLRKEFFSLLKDTGLIDG 821

[Close]

BLAST of HG10001617 vs. ExPASy Swiss-Prot
Match: F4HYJ7 (DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana OX=3702 GN=At1g48650 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-17
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 257 VQNRVATLQ--EHQDRSTNFNVLACYLTMLPME-----------------PILIVVAHLN 316
           VQN V  L+     D   N   L   L+MLP+E                 P++ VVA L+
Sbjct: 758 VQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLS 817

Query: 317 VRNPSIRPFKKKDVVDNAKSQFS-QNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSV 376
           VR+P + PF KKD+ + A+S+FS +++SDH  ++RA  G K+ E+   GYD   KN LS 
Sbjct: 818 VRDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSS 877

Query: 377 ESVRIIDSLRKEFFFLLKDIGLVN 381
           ++++ +DS+RK+FF LLK+  L++
Sbjct: 878 QTLKAMDSMRKQFFNLLKEASLID 901

[Close]

BLAST of HG10001617 vs. ExPASy Swiss-Prot
Match: F4ILR7 (DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2g35920 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.0e-09
Identity = 35/109 (32.11%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 286 MEPILIVVAHLNVRNPSIRPFKKKDVVDNAKSQFS-QNHSDHPVIIRACGGRKEVEKNFG 345
           + P L + A L  R+P + P  +K+  D AK  F+  + SDH  +++A  G ++ ++   
Sbjct: 731 VNPALTIAAALAYRSPFVLPLNRKEEADEAKRYFAGDSCSDHIALLKAYEGYRDAKRGGN 790

Query: 346 GYDIYCKNILSVESVRIIDSLRKEFFFLLKDIGLVN-GYLNTYNAWSLD 393
             D   +N LS  ++R+++ +R +F  LL DIG V+    N YN +S D
Sbjct: 791 EKDFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQYSYD 839

[Close]

BLAST of HG10001617 vs. ExPASy Swiss-Prot
Match: Q6P5D3 (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus OX=10090 GN=Dhx57 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 5.9e-04
Identity = 28/96 (29.17%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 286  MEPILIVVAHLNVRNPSIRPFKKKDVVDNAKSQFSQNHSDHPVIIRACGG--RKEVEKNF 345
            ++P L + A L  ++P + P+ KK+  +  K +F+  +SD+  ++ A  G      E   
Sbjct: 1083 LDPALTIAASLAFKSPFVSPWDKKEEANQKKLEFAFANSDYLALLCAYKGWQLSTKESAR 1142

Query: 346  GGYDIYCKNILSVESVRIIDSLRKEFFFLLKDIGLV 380
              Y+   +N LS  +++ + SL+++F  LL DIG V
Sbjct: 1143 ASYNYCRQNFLSGRTLQEMASLKRQFTELLSDIGFV 1178

[Close]

BLAST of HG10001617 vs. ExPASy TrEMBL
Match: A0A5A7SZF7 (DExH-box ATP-dependent RNA helicase DExH5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G006110 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-35
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKD 
Sbjct: 748 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDA 807

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 808 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 867

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 868 LLRDTGLVDGYSDTYNAWSLDE 889

[Close]

BLAST of HG10001617 vs. ExPASy TrEMBL
Match: A0A5D3CFK3 (DExH-box ATP-dependent RNA helicase DExH5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001370 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-35
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKD 
Sbjct: 719 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDA 778

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 779 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 838

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 839 LLRDTGLVDGYSDTYNAWSLDE 860

[Close]

BLAST of HG10001617 vs. ExPASy TrEMBL
Match: A0A1S3BFL6 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489319 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-35
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKD 
Sbjct: 798 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDA 857

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 858 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 917

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 918 LLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of HG10001617 vs. ExPASy TrEMBL
Match: A0A1S3BF36 (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489319 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-35
Identity = 83/142 (58.45%), Postives = 98/142 (69.01%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PIL VVA L+VR+P + P +KKD 
Sbjct: 798 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPILTVVAGLSVRDPFLTPLEKKDA 857

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA GG KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 858 AEAAKSQFSQDHSDHLAIIRAYGGWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 917

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 918 LLRDTGLVDGYSDTYNAWSLDE 939

[Close]

BLAST of HG10001617 vs. ExPASy TrEMBL
Match: A0A0A0KWI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611030 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.7e-34
Identity = 81/142 (57.04%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 269 DRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSIRPFKKKDV 328
           D S N  VL  YLTMLPME                 PI+ VVA L+VR+P + P +KKD 
Sbjct: 746 DESENLTVLGRYLTMLPMEPKLGKMLIVGAIFNCLDPIMTVVAGLSVRDPFLTPLEKKDA 805

Query: 329 VDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIIDSLRKEFFF 388
            + AKSQFSQ+HSDH  IIRA G  KE E+N+GGYD   KN LS++S++ IDSLRKEFF 
Sbjct: 806 AEAAKSQFSQDHSDHLAIIRAYGAWKEAERNYGGYDFCWKNFLSIQSMKAIDSLRKEFFS 865

Query: 389 LLKDIGLVNGYLNTYNAWSLDE 394
           LL+D GLV+GY +TYNAWSLDE
Sbjct: 866 LLRDTGLVDGYSDTYNAWSLDE 887

[Close]

BLAST of HG10001617 vs. TAIR 10
Match: AT2G01130.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 109.0 bits (271), Expect = 9.1e-24
Identity = 63/138 (45.65%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 261 VATLQEHQDRSTNFNVLACYLTMLPME-----------------PILIVVAHLNVRNPSI 320
           +  L E++D +T    L  YL+ LPME                 PIL V A L+VR+P +
Sbjct: 688 IGALDENEDLTT----LGRYLSKLPMEPKLGKMLILGAILGCLDPILTVAAGLSVRDPFL 747

Query: 321 RPFKKKDVVDNAKSQFSQNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSVESVRIID 380
            P  KKD+ + AKSQFS++HSDH  ++RA  G K+ E+    YD   KN LS++S+R ID
Sbjct: 748 TPQDKKDLAEAAKSQFSRDHSDHLALVRAYEGWKKAEEESAVYDYCWKNFLSIQSLRAID 807

Query: 381 SLRKEFFFLLKDIGLVNG 382
           SLRKEFF LLKD GL++G
Sbjct: 808 SLRKEFFSLLKDTGLIDG 821

[Close]

BLAST of HG10001617 vs. TAIR 10
Match: AT1G48650.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-18
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 257 VQNRVATLQ--EHQDRSTNFNVLACYLTMLPME-----------------PILIVVAHLN 316
           VQN V  L+     D   N   L   L+MLP+E                 P++ VVA L+
Sbjct: 758 VQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLS 817

Query: 317 VRNPSIRPFKKKDVVDNAKSQFS-QNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSV 376
           VR+P + PF KKD+ + A+S+FS +++SDH  ++RA  G K+ E+   GYD   KN LS 
Sbjct: 818 VRDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSS 877

Query: 377 ESVRIIDSLRKEFFFLLKDIGLVN 381
           ++++ +DS+RK+FF LLK+  L++
Sbjct: 878 QTLKAMDSMRKQFFNLLKEASLID 901

[Close]

BLAST of HG10001617 vs. TAIR 10
Match: AT1G48650.2 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-18
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 0


Query: 257 VQNRVATLQ--EHQDRSTNFNVLACYLTMLPME-----------------PILIVVAHLN 316
           VQN V  L+     D   N   L   L+MLP+E                 P++ VVA L+
Sbjct: 758 VQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAGLS 817

Query: 317 VRNPSIRPFKKKDVVDNAKSQFS-QNHSDHPVIIRACGGRKEVEKNFGGYDIYCKNILSV 376
           VR+P + PF KKD+ + A+S+FS +++SDH  ++RA  G K+ E+   GYD   KN LS 
Sbjct: 818 VRDPFLMPFDKKDLAETARSKFSGRDYSDHLTLVRAYNGWKDAERTHSGYDYCWKNFLSS 877

Query: 377 ESVRIIDSLRKEFFFLLKDIGLVN 381
           ++++ +DS+RK+FF LLK+  L++
Sbjct: 878 QTLKAMDSMRKQFFNLLKEASLID 901

[Close]

BLAST of HG10001617 vs. TAIR 10
Match: AT5G04895.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 79.3 bits (194), Expect = 7.7e-15
Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 287 EPILIVVAHLNVRNPSIRPFKKKDVVDNAKSQFS-QNHSDHPVIIRACGGRKEVEKNFGG 346
           +PIL +V+ L+VR+P + P  KKD+  +AK +FS +++SDH  ++RA  G K+ E+    
Sbjct: 768 DPILTIVSGLSVRDPFLLPQDKKDLALSAKLRFSAKDYSDHMALVRAFEGWKDAEREGSA 827

Query: 347 YDIYCKNILSVESVRIIDSLRKEFFFLLKDIGLVNGYLNTYNAWS 391
           Y+   +N LS ++++ I SLRK+F ++LK+ GLV+  L   N  S
Sbjct: 828 YEFCWRNFLSAQTLQAIHSLRKQFNYILKEAGLVHDDLALNNKLS 872

[Close]

BLAST of HG10001617 vs. TAIR 10
Match: AT2G35920.1 (RNA helicase family protein )

HSP 1 Score: 63.2 bits (152), Expect = 5.7e-10
Identity = 35/109 (32.11%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 286 MEPILIVVAHLNVRNPSIRPFKKKDVVDNAKSQFS-QNHSDHPVIIRACGGRKEVEKNFG 345
           + P L + A L  R+P + P  +K+  D AK  F+  + SDH  +++A  G ++ ++   
Sbjct: 731 VNPALTIAAALAYRSPFVLPLNRKEEADEAKRYFAGDSCSDHIALLKAYEGYRDAKRGGN 790

Query: 346 GYDIYCKNILSVESVRIIDSLRKEFFFLLKDIGLVN-GYLNTYNAWSLD 393
             D   +N LS  ++R+++ +R +F  LL DIG V+    N YN +S D
Sbjct: 791 EKDFCWQNFLSPVTLRMMEDMRNQFLDLLSDIGFVDKSKPNAYNQYSYD 839

The following BLAST results are available for this feature:

BLAST of HG10001617 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892223.1	1.7e-35	60.56	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial [Benincasa hispida]	[more]
XP_008446653.1	1.4e-34	58.45	PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 [...	[more]
TYK09146.1	1.4e-34	58.45	DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa]	[more]
KAA0034595.1	1.4e-34	58.45	DExH-box ATP-dependent RNA helicase DExH5 [Cucumis melo var. makuwa]	[more]
XP_008446652.1	1.4e-34	58.45	PREDICTED: DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 [...	[more]

BLAST of HG10001617 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IM84	1.3e-22	45.65	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana...	[more]
F4HYJ7	2.7e-17	38.19	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
F4ILR7	8.0e-09	32.11	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q6P5D3	5.9e-04	29.17	Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus OX=10090 GN=Dhx57 PE=1...	[more]

BLAST of HG10001617 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZF7	6.8e-35	58.45	DExH-box ATP-dependent RNA helicase DExH5 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3CFK3	6.8e-35	58.45	DExH-box ATP-dependent RNA helicase DExH5 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BFL6	6.8e-35	58.45	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X2 OS=Cucumis m...	[more]
A0A1S3BF36	6.8e-35	58.45	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1 OS=Cucumis m...	[more]
A0A0A0KWI1	5.7e-34	57.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611030 PE=4 SV=1	[more]

BLAST of HG10001617 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01130.1	9.1e-24	45.65	DEA(D/H)-box RNA helicase family protein	[more]
AT1G48650.1	2.0e-18	38.19	DEA(D/H)-box RNA helicase family protein	[more]
AT1G48650.2	2.0e-18	38.19	DEA(D/H)-box RNA helicase family protein	[more]
AT5G04895.1	7.7e-15	40.00	DEA(D/H)-box RNA helicase family protein	[more]
AT2G35920.1	5.7e-10	32.11	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR18934:SF146	DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL	coord: 272..393
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 272..393

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001617.1	HG10001617.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding