HG10001611 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001611
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr09: 18647394 .. 18647879 (-)
RNA-Seq Expression	HG10001611
Synteny	HG10001611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCGAGCTTCGGGACCATTTCATGAGTGTACTGGCTGTTATTGAAGCAAAATTCGAAGGGTTGGATTTCAATTATCTCGAATTGCTTCAGCTTCGGAGTCAGAGCTTCCATGACCATATCAAACGCCGGCGCCGCCAGCATGGTGAGGCTAGTTCCGGAGTCGACGATGGTTCCGCCGCCAGAATTGATGTCCCAAACGCGAGGAGGAATGTTGAGCATGACGCCGTCGGCGGAGATTCCGATGAGATGGACGCCATAGAAGCTGCTGTAAGGGTCGCCGACGAAGAGTCTGGTGAAGGACATGTTGCCGGAAGGGAGGACGGAGGAGGCGGCAGAGGAAGCAGAAGGGGAAGGGATGCCGAGGATGAAGTAGCTGGTGGCGGTGTGGTCGCTGAGATGGTCGACAAGGCAGTAAGAGAAGCCGCCGCCGTTGGCGTTTTGGGCGGCTTTGTAGGTGAAAGAGTAGGAGCTAGTGCCTAA

mRNA sequence

ATGGAATCCGAGCTTCGGGACCATTTCATGAGTGTACTGGCTGTTATTGAAGCAAAATTCGAAGGGTTGGATTTCAATTATCTCGAATTGCTTCAGCTTCGGAGTCAGAGCTTCCATGACCATATCAAACGCCGGCGCCGCCAGCATGGTGAGGCTAGTTCCGGAGTCGACGATGGTTCCGCCGCCAGAATTGATGTCCCAAACGCGAGGAGGAATGTTGAGCATGACGCCGTCGGCGGAGATTCCGATGAGATGGACGCCATAGAAGCTGCTGTAAGGGTCGCCGACGAAGAGTCTGGTGAAGGACATGTTGCCGGAAGGGAGGACGGAGGAGGCGGCAGAGGAAGCAGAAGGGGAAGGGATGCCGAGGATGAAGTAGCTGGTGGCGGTGTGGTCGCTGAGATGGTCGACAAGGCAGTAAGAGAAGCCGCCGCCGTTGGCGTTTTGGGCGGCTTTGTAGGTGAAAGAGTAGGAGCTAGTGCCTAA

Coding sequence (CDS)

ATGGAATCCGAGCTTCGGGACCATTTCATGAGTGTACTGGCTGTTATTGAAGCAAAATTCGAAGGGTTGGATTTCAATTATCTCGAATTGCTTCAGCTTCGGAGTCAGAGCTTCCATGACCATATCAAACGCCGGCGCCGCCAGCATGGTGAGGCTAGTTCCGGAGTCGACGATGGTTCCGCCGCCAGAATTGATGTCCCAAACGCGAGGAGGAATGTTGAGCATGACGCCGTCGGCGGAGATTCCGATGAGATGGACGCCATAGAAGCTGCTGTAAGGGTCGCCGACGAAGAGTCTGGTGAAGGACATGTTGCCGGAAGGGAGGACGGAGGAGGCGGCAGAGGAAGCAGAAGGGGAAGGGATGCCGAGGATGAAGTAGCTGGTGGCGGTGTGGTCGCTGAGATGGTCGACAAGGCAGTAAGAGAAGCCGCCGCCGTTGGCGTTTTGGGCGGCTTTGTAGGTGAAAGAGTAGGAGCTAGTGCCTAA

Protein sequence

MESELRDHFMSVLAVIEAKFEGLDFNYLELLQLRSQSFHDHIKRRRRQHGEASSGVDDGSAARIDVPNARRNVEHDAVGGDSDEMDAIEAAVRVADEESGEGHVAGREDGGGGRGSRRGRDAEDEVAGGGVVAEMVDKAVREAAAVGVLGGFVGERVGASA

Homology

[Close]

BLAST of HG10001611 vs. NCBI nr
Match: XP_023007258.1 (uncharacterized protein LOC111499797 [Cucurbita maxima])

HSP 1 Score: 101.7 bits (252), Expect = 6.2e-18
Identity = 81/164 (49.39%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 1   MESELRDHFMSVLAVIEAKFE-GLDFNYLELLQLRSQSFHDHIKRRRRQHGEASSGVDDG 60
           MES+LR H    L+VIEAK+E  L F+  E   L S  F+  I  R RQH +A +GV DG
Sbjct: 1   MESKLRQHTKIPLSVIEAKYEVPLLFHSSEFRDLGSHRFNHRIVSRLRQHRQAGAGVQDG 60

Query: 61  SAARIDVPNARRNVEHDAVGGDSDEMDAIEAAVRVADEE-SGEGHVAGREDGGG-GRGSR 120
           +A  +DVP+   +V+   V GDSD++D + A V  A EE SG G   GR  GGG G G  
Sbjct: 61  AAPGLDVPDVTGDVKDLVVDGDSDQLDTVVAVVLAAGEEFSGGGGADGRGRGGGEGLG-- 120

Query: 121 RGRDAEDEVAGGGVVAEMVDKAVREAAAVGVLGGFVGERVGASA 162
            G  AEDEVA GG VA ++ +AV EAAA  V GGFV E V A A
Sbjct: 121 -GGGAEDEVANGGCVAVVIGEAVGEAAADVVFGGFVDEGVDARA 161

[Close]

BLAST of HG10001611 vs. ExPASy TrEMBL
Match: A0A6J1L775 (uncharacterized protein LOC111499797 OS=Cucurbita maxima OX=3661 GN=LOC111499797 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.0e-18
Identity = 81/164 (49.39%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 1   MESELRDHFMSVLAVIEAKFE-GLDFNYLELLQLRSQSFHDHIKRRRRQHGEASSGVDDG 60
           MES+LR H    L+VIEAK+E  L F+  E   L S  F+  I  R RQH +A +GV DG
Sbjct: 1   MESKLRQHTKIPLSVIEAKYEVPLLFHSSEFRDLGSHRFNHRIVSRLRQHRQAGAGVQDG 60

Query: 61  SAARIDVPNARRNVEHDAVGGDSDEMDAIEAAVRVADEE-SGEGHVAGREDGGG-GRGSR 120
           +A  +DVP+   +V+   V GDSD++D + A V  A EE SG G   GR  GGG G G  
Sbjct: 61  AAPGLDVPDVTGDVKDLVVDGDSDQLDTVVAVVLAAGEEFSGGGGADGRGRGGGEGLG-- 120

Query: 121 RGRDAEDEVAGGGVVAEMVDKAVREAAAVGVLGGFVGERVGASA 162
            G  AEDEVA GG VA ++ +AV EAAA  V GGFV E V A A
Sbjct: 121 -GGGAEDEVANGGCVAVVIGEAVGEAAADVVFGGFVDEGVDARA 161

The following BLAST results are available for this feature:

BLAST of HG10001611 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007258.1	6.2e-18	49.39	uncharacterized protein LOC111499797 [Cucurbita maxima]	[more]

BLAST of HG10001611 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L775	3.0e-18	49.39	uncharacterized protein LOC111499797 OS=Cucurbita maxima OX=3661 GN=LOC111499797...	[more]

BLAST of HG10001611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001611.1	HG10001611.1	mRNA