HG10001427 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001427
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr09: 17055130 .. 17055330 (-)
RNA-Seq Expression	HG10001427
Synteny	HG10001427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGATCAAAACGGAAAAGACATCATCCAGCGTCAAAGCTTCCACTCCAGCGGTTAATCAACCCTCTAGCCTTCAAGAAAGCCTGCAAAACAAATACAGAAAAATACCGGTCAAAACGGAGGAGGCATCACCCGGTGCTATTGCTTCCTTTCAAGCGCTCAATCAATCAGCTGGCCTTCAAGAAGGTCCGCAAAACTAA

mRNA sequence

ATGCCGATCAAAACGGAAAAGACATCATCCAGCGTCAAAGCTTCCACTCCAGCGGTTAATCAACCCTCTAGCCTTCAAGAAAGCCTGCAAAACAAATACAGAAAAATACCGGTCAAAACGGAGGAGGCATCACCCGGTGCTATTGCTTCCTTTCAAGCGCTCAATCAATCAGCTGGCCTTCAAGAAGGTCCGCAAAACTAA

Coding sequence (CDS)

ATGCCGATCAAAACGGAAAAGACATCATCCAGCGTCAAAGCTTCCACTCCAGCGGTTAATCAACCCTCTAGCCTTCAAGAAAGCCTGCAAAACAAATACAGAAAAATACCGGTCAAAACGGAGGAGGCATCACCCGGTGCTATTGCTTCCTTTCAAGCGCTCAATCAATCAGCTGGCCTTCAAGAAGGTCCGCAAAACTAA

Protein sequence

MPIKTEKTSSSVKASTPAVNQPSSLQESLQNKYRKIPVKTEEASPGAIASFQALNQSAGLQEGPQN

Homology

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BLAST of HG10001427 vs. NCBI nr
Match: KAG7010585.1 (hypothetical protein SDJN02_27379, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 19 VNQPSSLQESLQNKYRKIPVKTEEASPGAIASFQALNQSAGLQEGPQN 67
          VNQPS LQES      ++ +KTEE SP AIAS QALNQSA LQEGPQN
Sbjct: 42 VNQPSGLQES-----PEVVIKTEETSPSAIASVQALNQSASLQEGPQN 84

The following BLAST results are available for this feature:

BLAST of HG10001427 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010585.1	3.2e-05	68.75	hypothetical protein SDJN02_27379, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10001427 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001427 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001427 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001427.1	HG10001427.1	mRNA