HG10001383 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001383
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein transport protein Sec61 subunit beta
Location	Chr09: 16601716 .. 16602039 (-)
RNA-Seq Expression	HG10001383
Synteny	HG10001383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAGGTGCTTCTCAATCCCAATCCTCATCCTCCTCTACCTCCAGACCCGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACAGCTGGCCTCCGCCGCCGCCGTATCGGCTCCACTTCTGCTGCCGGCTCTACTGCAATCGTAGGTGGCGGATCAAGCGGCGGCGGAAACATGCTGAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTTCTCCCACCGTTGTCCTCGTCATGTGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTCTAA

mRNA sequence

ATGGCCAGAGGTGCTTCTCAATCCCAATCCTCATCCTCCTCTACCTCCAGACCCGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACAGCTGGCCTCCGCCGCCGCCGTATCGGCTCCACTTCTGCTGCCGGCTCTACTGCAATCGTAGGTGGCGGATCAAGCGGCGGCGGAAACATGCTGAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTTCTCCCACCGTTGTCCTCGTCATGTGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTCTAA

Coding sequence (CDS)

ATGGCCAGAGGTGCTTCTCAATCCCAATCCTCATCCTCCTCTACCTCCAGACCCGGCGTCGTCGCTCCTCGCGGCTCCGCGGCGGCGACAGCTGGCCTCCGCCGCCGCCGTATCGGCTCCACTTCTGCTGCCGGCTCTACTGCAATCGTAGGTGGCGGATCAAGCGGCGGCGGAAACATGCTGAGATTCTACACTGACGATGCTCCAGGCTTGAAGATTTCTCCCACCGTTGTCCTCGTCATGTGCCTCTGCTTCATCGGCTTCGTCACCGGCCTCCACGTCTTTGGTAAGCTCTATCGCGCGCGATCCGCCGCTGGAGTCTAA

Protein sequence

MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV

Homology

[Close]

BLAST of HG10001383 vs. NCBI nr
Match: XP_038902812.1 (protein transport protein Sec61 subunit beta [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-42
Identity = 100/107 (93.46%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNM 60
           MARG SQSQS+SSSTSRPGVVAPRGSAAATAGLRRRR GSTSAA ST +VGGGSSGGGNM
Sbjct: 1   MARGVSQSQSTSSSTSRPGVVAPRGSAAATAGLRRRRPGSTSAAASTGLVGGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of HG10001383 vs. NCBI nr
Match: XP_022958107.1 (protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532.1 protein transport protein Sec61 subunit beta [Cucurbita maxima] >XP_023534505.1 protein transport protein Sec61 subunit beta [Cucurbita pepo subsp. pepo] >KAG7013903.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNM 60
           MARG SQSQS+SSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+T +V GGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLV+ LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of HG10001383 vs. NCBI nr
Match: XP_004149541.1 (protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypothetical protein Csa_023023 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGG 60
           MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ ST +VGGGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of HG10001383 vs. NCBI nr
Match: XP_008463929.1 (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA0035333.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa] >TYK14304.1 protein transport protein Sec61 subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.2e-40
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGG 60
           MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA  ST +VGGGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of HG10001383 vs. NCBI nr
Match: XP_022140347.1 (protein transport protein Sec61 subunit beta [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNM 60
           MARG SQSQS+SSSTSRPGV APRGSAAATAGLRRRR+ ST +AGS  +VG GSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYRARS AGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV 107

[Close]

BLAST of HG10001383 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  CLCFIGFVTGLHVFGKLY 100
            + FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of HG10001383 vs. ExPASy Swiss-Prot
Match: P60467 (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 6   SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYT 65
           S +   SS  S    VA R +A +T   R+     T +AG T      S+G G M RFYT
Sbjct: 7   SGTNVGSSGRSPSKAVAAR-AAGSTVRQRKNASCGTRSAGRTT-----SAGTGGMWRFYT 66

Query: 66  DDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA 102
           +D+PGLK+ P  VLVM L FI  V  LH++GK  R+
Sbjct: 67  EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of HG10001383 vs. ExPASy Swiss-Prot
Match: A8I6P9 (Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=3055 GN=SEC61B PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 40/97 (41.24%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 1  MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNM 60
          MA   SQ+ +  +   R    AP G+A A   LRRR +  +  +G+T             
Sbjct: 1  MAGSQSQASTLVARGGRSSSNAPTGAAGA---LRRRPVRGSGGSGTTKAQQAA------- 60

Query: 61 LRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGK 98
          + FYTDD PG K+SP VV+ M L FI FVT LHV GK
Sbjct: 61 MNFYTDDTPGWKMSPVVVITMSLSFIAFVTILHVVGK 87

[Close]

BLAST of HG10001383 vs. ExPASy Swiss-Prot
Match: P60468 (Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 6   SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYT 65
           S +   SS  S    VA R +A +T   R+     T +AG T      S+G G M RFYT
Sbjct: 7   SGTNVGSSGRSPSKAVAAR-AAGSTVRQRKNASCGTRSAGRTT-----SAGTGGMWRFYT 66

Query: 66  DDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA 102
           +D+PGLK+ P  VLVM L FI  V  LH++GK  R+
Sbjct: 67  EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

[Close]

BLAST of HG10001383 vs. ExPASy Swiss-Prot
Match: Q9CQS8 (Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 6   SQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNMLRFYT 65
           S +   SS  S    VA R +A +T   R+     T +AG T      S+G G M RFYT
Sbjct: 7   SGTNVGSSGRSPSKAVAAR-AAGSTVRQRKNASCGTRSAGRTT-----SAGTGGMWRFYT 66

Query: 66  DDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRA 102
           +D+PGLK+ P  VLVM L FI  V  LH++GK  R+
Sbjct: 67  EDSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

[Close]

BLAST of HG10001383 vs. ExPASy TrEMBL
Match: A0A6J1JZ65 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111491039 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.5e-42
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNM 60
           MARG SQSQS+SSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+T +V GGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLV+ LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of HG10001383 vs. ExPASy TrEMBL
Match: A0A6J1H102 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111459432 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.5e-42
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MARGASQSQSSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGGNM 60
           MARG SQSQS+SSSTSRPGVVAPRGSAAATAGLRRRR+GSTS AG+T +V GGSSGGGNM
Sbjct: 1   MARGTSQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGGNM 60

Query: 61  LRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           LRFYTDDAPGLKISPTVVLV+ LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  LRFYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of HG10001383 vs. ExPASy TrEMBL
Match: A0A0A0KHR1 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G293930 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.3e-41
Identity = 99/109 (90.83%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGG 60
           MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA+ ST +VGGGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of HG10001383 vs. ExPASy TrEMBL
Match: A0A5D3CTD4 (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00270 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGG 60
           MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA  ST +VGGGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of HG10001383 vs. ExPASy TrEMBL
Match: A0A1S3CKE5 (Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC103501938 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MARGASQSQSSSS--STSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGGG 60
           MARGASQSQSS+S  ST+RPGVVAPRGSAAATAGLRRRR GSTSA  ST +VGGGSSGGG
Sbjct: 1   MARGASQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG 60

Query: 61  NMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAAGV 108
           NMLRFYTDDAPGLKISPTVVLVM LCFIGFVTGLHVFGKLYRARSAAGV
Sbjct: 61  NMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of HG10001383 vs. TAIR 10
Match: AT5G60460.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 128.3 bits (321), Expect = 3.8e-30
Identity = 77/111 (69.37%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MARGASQSQ---SSSSSTSRPGVVAPRGSAAATAGLRRRRIGSTSAAGSTAIVGGGS--- 60
           MARG+SQSQ   S+ SST+RPG+ APRGSAAATAG+RRRR+G      S    GGGS   
Sbjct: 1   MARGSSQSQQSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSS----GGGSGVG 60

Query: 61  SGGGNMLRFYTDDAPGLKISPTVVLVMCLCFIGFVTGLHVFGKLYRARSAA 106
           SG  NMLRFYTDDAPGLKISPTVVL+M LCFIGFVT LHVFGKLY  +S +
Sbjct: 61  SGSSNMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGKLYLHKSGS 107

[Close]

BLAST of HG10001383 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  CLCFIGFVTGLHVFGKLY 100
            + FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of HG10001383 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  CLCFIGFVTGLHVFGKLY 100
            + FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of HG10001383 vs. TAIR 10
Match: AT2G45070.3 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  CLCFIGFVTGLHVFGKLY 100
            + FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of HG10001383 vs. TAIR 10
Match: AT2G45070.4 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 84.0 bits (206), Expect = 8.2e-17
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 24  RGSAAATAGLRRRRIGSTSAAGSTAIVGGGSSGG--GNMLRFYTDDAPGLKISPTVVLVM 83
           RGSAAATA +RRR+   TS AG     GGG+SGG  G+ML+FYTDDAPGLKISP VVL+M
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 68

Query: 84  CLCFIGFVTGLHVFGKLY 100
            + FI FV  LHV GKLY
Sbjct: 69  SIGFIAFVAVLHVMGKLY 79

The following BLAST results are available for this feature:

BLAST of HG10001383 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902812.1	3.1e-42	93.46	protein transport protein Sec61 subunit beta [Benincasa hispida]	[more]
XP_022958107.1	1.5e-41	90.65	protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532....	[more]
XP_004149541.1	1.7e-40	90.83	protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypot...	[more]
XP_008463929.1	2.2e-40	90.83	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo] >KAA00353...	[more]
XP_022140347.1	1.9e-39	87.85	protein transport protein Sec61 subunit beta [Momordica charantia]	[more]

BLAST of HG10001383 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	1.2e-15	66.67	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P60467	3.7e-06	42.71	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris OX=9615 G...	[more]
A8I6P9	3.7e-06	41.24	Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=305...	[more]
P60468	3.7e-06	42.71	Protein transport protein Sec61 subunit beta OS=Homo sapiens OX=9606 GN=SEC61B P...	[more]
Q9CQS8	3.7e-06	42.71	Protein transport protein Sec61 subunit beta OS=Mus musculus OX=10090 GN=Sec61b ...	[more]

BLAST of HG10001383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ65	7.5e-42	90.65	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H102	7.5e-42	90.65	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0KHR1	8.3e-41	90.83	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A5D3CTD4	1.1e-40	90.83	Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CKE5	1.1e-40	90.83	Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of HG10001383 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60460.1	3.8e-30	69.37	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.1	8.2e-17	66.67	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	8.2e-17	66.67	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.3	8.2e-17	66.67	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.4	8.2e-17	66.67	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030671	Protein transport Sec61-beta/Sbh	PIRSF	PIRSF006398	Sec61_beta	coord: 4..104 e-value: 1.3E-25 score: 87.6
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 1..104
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 58..96 e-value: 2.5E-17 score: 62.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	PANTHER	PTHR13509:SF14	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001383.1	HG10001383.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005784	Sec61 translocon complex