HG10001362 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001362
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	exosome complex component RRP41-like
Location	Chr09: 16397102 .. 16398128 (+)
RNA-Seq Expression	HG10001362
Synteny	HG10001362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAAAAGCGACACCAACTACCGCAACGTATTCTCCGTCTCCTACTATCCATAAAACCAGGCCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCCGATGGCCGAGCCTTCCACCAATGCCGGCCTGCTTGTATGTTTCTGTTTTCCTCATTTGCTCTGTTTCACTGCTCCACAAAATATAGCACTAGGTTATTGTTTCATTTATGTCTGTTTAAGTATTGTTTCTAATTGCTGCTAGTTTGAGTTTATCGTTCACAATCAGTTTATCTTAAATACTGAGCACCCGGGCTTTATTTCTGATGTCTCAATGCGAGACCACAAGAGGAATCAAATTTGCTCTTTATTTGTATGCTTATAGTTATGGTATCTTTTCATGATAACATGATTATGGGCTTTGTCGAGGATCCTACATTGGAAAAATCAAGAACCAACCAATCTTAATAAAATAGATGAGCTACTCTTCTTATTGCGAATTGGTTTTGAGATGGAACTCTACGTTATCTAATAGACTTGAGAATCTTAGTTTATCGATGAGGATTTTCCTAGGGATTAGTCATATGGCTCTTCCTTTTTCACTTCTGGGGGAAACAGAGTGACAGATGCCATGATCTTAAAAAGAAAAAGGAAAACAAAAAGCATCTTGTTTCTTTTGATGGAAATATTGGTCGATGCCATGATCTTAATGAATCAAGTGTTGACTGGGAAGTAGGAAATAACATGGTTAAGAATGTGTTGTCTCGACTCTTGACATTGAAGTCTTACTGAAAGGTTCTTCCTTGGTGGCATGGTTCAGTCGGTTTGTAGTTGATCATGGAGTCCTTGACTTGGGATTTTTAACTTATGTTACTTGGTGGTTTTTATACTTTTGTTGTTGAATCTATACTGAAAATATCATCATCTTTATAGAAACTAAAGTCATAATTTCCTTGCAGTTTTCAGGACTGGTGCTGTAAATGCTGCCTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTGTGTAA

mRNA sequence

ATGGCCAAAAAAGCGACACCAACTACCGCAACGTATTCTCCGTCTCCTACTATCCATAAAACCAGGCCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCCGATGGCCGAGCCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCCTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTGTGTAA

Coding sequence (CDS)

ATGGCCAAAAAAGCGACACCAACTACCGCAACGTATTCTCCGTCTCCTACTATCCATAAAACCAGGCCACCCATCTTCAGAACCGACGACGTCGACTGGGTTCGCCCCGATGGCCGAGCCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGTGCTGTAAATGCTGCCTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTGTGTAA

Protein sequence

MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV

Homology

[Close]

BLAST of HG10001362 vs. NCBI nr
Match: XP_022986160.1 (exosome complex component RRP41-like [Cucurbita maxima])

HSP 1 Score: 147.1 bits (370), Expect = 5.9e-32
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. NCBI nr
Match: KAG7010638.1 (Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. NCBI nr
Match: XP_022944714.1 (exosome complex component RRP41-like [Cucurbita moschata])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATP T TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. NCBI nr
Match: XP_023534485.1 (exosome complex component RRP41-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 69/74 (93.24%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATP T TYSPSPT HKTRPPIFR+DDVDWVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-20
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MA K    T TYSP   + ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGS
Sbjct: 1  MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 73

[Close]

BLAST of HG10001362 vs. ExPASy Swiss-Prot
Match: Q97BZ5 (Exosome complex component Rrp41 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.4e-04
Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 20 KTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV 75
          KT     +  + D +R DGR+F++ RP     G +N A GSAY E+G  K+IV V
Sbjct: 3  KTETSKIKLINEDNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGV 57

[Close]

BLAST of HG10001362 vs. ExPASy Swiss-Prot
Match: Q9HIP2 (Exosome complex component Rrp41 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.4e-04
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 32 DWVRPDGRAFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSV 75
          D +R DGR+F++ RP   + G +N A GSAY E+G  K++V V
Sbjct: 15 DNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGV 57

[Close]

BLAST of HG10001362 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATP T+TYSPSPT HKTRPPIFR+DDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATP T TYSPSPT HKTRPPIFR+DDVDWVRPDGR+FHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATPTT TYSPSPT+HKTRP +FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MAKKATP T TYSPSPTIHKTRPPIFR+D+ DWVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 74

[Close]

BLAST of HG10001362 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.4e-31
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1  MAKKATP-TTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASG 60
          MAKKATP TT TYSPSPT+HKTRPP+FRTDDV+WVRPDGR FHQCRPAFFRTGAVNAASG
Sbjct: 1  MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61 SAYAEFGNTKVIVSV 75
          SAYAEFGNTKVIVSV
Sbjct: 61 SAYAEFGNTKVIVSV 75

[Close]

BLAST of HG10001362 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-21
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1  MAKKATPTTATYSPSPTIHKTRPPIFRTDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60
          MA K    T TYSP   + ++R PIF+  D+DW RPDGR FHQCRPA  +TGAV++ASGS
Sbjct: 1  MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61 AYAEFGNTKVIVSV 75
          AYAEFGNTKVIVSV
Sbjct: 61 AYAEFGNTKVIVSV 73

The following BLAST results are available for this feature:

BLAST of HG10001362 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986160.1	5.9e-32	94.59	exosome complex component RRP41-like [Cucurbita maxima]	[more]
KAG6570792.1	1.3e-31	93.24	Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su...	[more]
KAG7010638.1	1.3e-31	93.24	Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argy...	[more]
XP_022944714.1	1.7e-31	93.24	exosome complex component RRP41-like [Cucurbita moschata]	[more]
XP_023534485.1	2.2e-31	93.24	exosome complex component RRP41-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10001362 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVK7	4.1e-20	66.22	Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P...	[more]
Q97BZ5	2.4e-04	41.82	Exosome complex component Rrp41 OS=Thermoplasma volcanium (strain ATCC 51530 / D...	[more]
Q9HIP2	5.4e-04	46.51	Exosome complex component Rrp41 OS=Thermoplasma acidophilum (strain ATCC 25905 /...	[more]

BLAST of HG10001362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDA9	2.8e-32	94.59	exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981...	[more]
A0A6J1FYV1	8.3e-32	93.24	exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A0A0KEK6	1.8e-31	91.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1	[more]
A0A6J1CHT0	2.4e-31	91.89	exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3CKF3	5.4e-31	92.00	exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=...	[more]

BLAST of HG10001362 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27490.1	2.9e-21	66.22	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 31..74 e-value: 7.8E-13 score: 50.3
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 43..74 e-value: 1.2E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR11953:SF2	EXOSOME COMPLEX COMPONENT MTR3	coord: 14..74
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 14..74
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 32..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001362.1	HG10001362.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0009845	seed germination
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0016740	transferase activity