HG10001347 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001347
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SNF1-related protein kinase regulatory subunit beta-3
Location	Chr09: 16265285 .. 16265727 (-)
RNA-Seq Expression	HG10001347
Synteny	HG10001347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACCTTTACTCTGAAGATAGTGTAAGCTGCTAAAGTTCTAAAGCTAGATCTAGGTGTTTTCATCAACTAATAACATAAAATGAGGATTTAAAGATGTATCCTTTCTACAGGATCAGACCACCGTAGTGGGTTTTGAAGTCCCAAAGTCCCCCGATTCAACCTATAACAATGTATACATTGGGAGCGAAGACGAGGCACGTGATCCACCACTTGTCCCGCCTCATTTGCAACACACCTTACTCAGCCAACCAGCGAGTAGAGATGCCGGTGGGACTCTTCCGTTGCCACAGAATGTGATTCTCAACCATCTTTTTATCGAAAACCGAGAGACTCCACGTTCCGTTGTTGCCCTTGGATTCACACATCGTTTTCATTCAAAATACGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCAGGGCTTAG

mRNA sequence

ATGAACAACCTTTACTCTGAAGATAGTGATCAGACCACCGTAGTGGGTTTTGAAGTCCCAAAGTCCCCCGATTCAACCTATAACAATGTATACATTGGGAGCGAAGACGAGGCACGTGATCCACCACTTGTCCCGCCTCATTTGCAACACACCTTACTCAGCCAACCAGCGAGTAGAGATGCCGGTGGGACTCTTCCGTTGCCACAGAATGTGATTCTCAACCATCTTTTTATCGAAAACCGAGAGACTCCACGTTCCGTTGTTGCCCTTGGATTCACACATCGTTTTCATTCAAAATACGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCAGGGCTTAG

Coding sequence (CDS)

ATGAACAACCTTTACTCTGAAGATAGTGATCAGACCACCGTAGTGGGTTTTGAAGTCCCAAAGTCCCCCGATTCAACCTATAACAATGTATACATTGGGAGCGAAGACGAGGCACGTGATCCACCACTTGTCCCGCCTCATTTGCAACACACCTTACTCAGCCAACCAGCGAGTAGAGATGCCGGTGGGACTCTTCCGTTGCCACAGAATGTGATTCTCAACCATCTTTTTATCGAAAACCGAGAGACTCCACGTTCCGTTGTTGCCCTTGGATTCACACATCGTTTTCATTCAAAATACGTCACGGTTGTGCTTTACAAACCGGTTCATAGAAGAGGAAGTAGCAGGGCTTAG

Protein sequence

MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRDAGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA

Homology

[Close]

BLAST of HG10001347 vs. NCBI nr
Match: XP_004145755.1 (SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_008465360.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_008465361.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_011657018.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_016903370.1 PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 [Cucumis melo] >XP_031742408.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >KAA0035235.1 SNF1-related protein kinase regulatory subunit beta-3 isoform X2 [Cucumis melo var. makuwa] >KGN46863.1 hypothetical protein Csa_020718 [Cucumis sativus] >TYK22390.1 SNF1-related protein kinase regulatory subunit beta-3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 4.0e-59
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNNLYSEDSDQTTVVGFEVPKSPDSTYNN+Y+GSEDEARDPPLVPPHLQHTLLSQPASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AG TLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of HG10001347 vs. NCBI nr
Match: XP_038902942.1 (SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida] >XP_038902943.1 SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNNL SEDSDQ TVVGFEVPKSPDSTYNNVY+GSEDEARDPPLVPPHLQHTLLSQPASRD
Sbjct: 1   MNNLCSEDSDQNTVVGFEVPKSPDSTYNNVYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AG TLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of HG10001347 vs. NCBI nr
Match: XP_022958406.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >XP_022958407.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >XP_022958408.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] >KAG6606042.1 SNF1-related protein kinase regulatory subunit beta-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035994.1 SNF1-related protein kinase regulatory subunit beta-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 2.7e-55
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNN + EDSDQTTVVGFEVPKSPDSTYNNVY+GSED+ARDPP VPPHLQHTLLS PASRD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPASRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
           AGGTLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of HG10001347 vs. NCBI nr
Match: XP_022996167.1 (SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >XP_022996168.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >XP_022996169.1 SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima])

HSP 1 Score: 223.8 bits (569), Expect = 7.8e-55
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNN + EDSDQTTVVGFEVPKSPDSTYNNVY+GSED+ARDPP VPPHLQHTLLS PA RD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
           AGGTLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of HG10001347 vs. NCBI nr
Match: XP_022140750.1 (SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia] >XP_022140751.1 SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 106/117 (90.60%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNN YSEDSDQTTVVGFEVP SPDSTYNN+Y+GSEDEARDPP  PPHLQHTLLS PASRD
Sbjct: 1   MNNPYSEDSDQTTVVGFEVPNSPDSTYNNLYLGSEDEARDPPFAPPHLQHTLLSHPASRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AGGTLPLP NVILNHL+IENRETPRSVVALGFTHRF SK+VTVVLYKPVHRRGSSRA
Sbjct: 61  AGGTLPLPHNVILNHLYIENRETPRSVVALGFTHRFRSKFVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of HG10001347 vs. ExPASy Swiss-Prot
Match: Q9ZUU8 (SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX=3702 GN=KINB3 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MN+   +D + TTVVGFEVP SP S+YNNVY  +EDE RDPP VPPHLQH+LL    S +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
                  PQNV+LNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  LAYA---PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]

BLAST of HG10001347 vs. ExPASy Swiss-Prot
Match: Q9SCY5 (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-25
Identity = 56/103 (54.37%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 10  DQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASR-DAGGTLPLP 69
           D  ++ GFE P+SP+++Y+N+ +G+ED +++PP+VPPHLQ TLL+ PA+  D    LP P
Sbjct: 187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 246

Query: 70  QNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           Q+VILNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 247 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289

[Close]

BLAST of HG10001347 vs. ExPASy Swiss-Prot
Match: Q84VQ1 (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-20
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 13  TVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRDAGGTLPLPQNVI 72
           ++V FE P SPD +Y      +ED A++P  VPP L  TLL    + +       PQ+V+
Sbjct: 188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTEETAIATKPQHVV 247

Query: 73  LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 248 LNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

[Close]

BLAST of HG10001347 vs. ExPASy Swiss-Prot
Match: Q9QZH4 (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-10
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 18  EVPKSPDSTY-NNVYI-GSEDEARDPPLVPPHLQHTLLSQPASRDAG-GTLPLPQNVILN 77
           ++  SP   Y   +Y+  SE+  + PP++PPHL   +L++  +       LP P +V+LN
Sbjct: 179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+     T  SV+ L  THR+  KYVT +LYKP+
Sbjct: 239 HLYA--LSTKDSVMVLSATHRYKKKYVTTLLYKPI 271

[Close]

BLAST of HG10001347 vs. ExPASy Swiss-Prot
Match: Q6PAM0 (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus OX=10090 GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 18  EVPKSPDSTY-NNVYI-GSEDEARDPPLVPPHLQHTLLSQPASRDAG-GTLPLPQNVILN 77
           ++  SP   Y   +Y+  SE+  + PP++PPHL   +L++  +       LP P +V+LN
Sbjct: 179 DLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN 238

Query: 78  HLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPV 110
           HL+  + +   SV+ L  THR+  KYVT +LYKP+
Sbjct: 239 HLYALSIKD--SVMVLSATHRYKKKYVTTLLYKPI 271

[Close]

BLAST of HG10001347 vs. ExPASy TrEMBL
Match: A0A1S3CP39 (SNF1-related protein kinase regulatory subunit beta-3 OS=Cucumis melo OX=3656 GN=LOC103502997 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.9e-59
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNNLYSEDSDQTTVVGFEVPKSPDSTYNN+Y+GSEDEARDPPLVPPHLQHTLLSQPASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AG TLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of HG10001347 vs. ExPASy TrEMBL
Match: A0A5A7T1A3 (SNF1-related protein kinase regulatory subunit beta-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00140 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.9e-59
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNNLYSEDSDQTTVVGFEVPKSPDSTYNN+Y+GSEDEARDPPLVPPHLQHTLLSQPASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AG TLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of HG10001347 vs. ExPASy TrEMBL
Match: A0A0A0KBG3 (AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G147560 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.9e-59
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNNLYSEDSDQTTVVGFEVPKSPDSTYNN+Y+GSEDEARDPPLVPPHLQHTLLSQPASRD
Sbjct: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNIYVGSEDEARDPPLVPPHLQHTLLSQPASRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 118
           AG TLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA
Sbjct: 61  AGETLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSSRA 117

[Close]

BLAST of HG10001347 vs. ExPASy TrEMBL
Match: A0A6J1H1Z8 (SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita moschata OX=3662 GN=LOC111459640 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.3e-55
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNN + EDSDQTTVVGFEVPKSPDSTYNNVY+GSED+ARDPP VPPHLQHTLLS PASRD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPASRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
           AGGTLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of HG10001347 vs. ExPASy TrEMBL
Match: A0A6J1KA31 (SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita maxima OX=3661 GN=LOC111491475 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.8e-55
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MNN + EDSDQTTVVGFEVPKSPDSTYNNVY+GSED+ARDPP VPPHLQHTLLS PA RD
Sbjct: 1   MNNPFPEDSDQTTVVGFEVPKSPDSTYNNVYLGSEDDARDPPPVPPHLQHTLLSHPAGRD 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
           AGGTLPLPQNV+LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS
Sbjct: 61  AGGTLPLPQNVVLNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 115

[Close]

BLAST of HG10001347 vs. TAIR 10
Match: AT2G28060.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 154.1 bits (388), Expect = 7.1e-38
Identity = 74/115 (64.35%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MNNLYSEDSDQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRD 60
           MN+   +D + TTVVGFEVP SP S+YNNVY  +EDE RDPP VPPHLQH+LL    S +
Sbjct: 1   MNSQNPDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGSME 60

Query: 61  AGGTLPLPQNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHRRGSS 116
                  PQNV+LNHL+IENR+ PRSVVALGF+HRF +K+VTVV+YKPV RRGS+
Sbjct: 61  LAYA---PQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQRRGSA 112

[Close]

BLAST of HG10001347 vs. TAIR 10
Match: AT4G16360.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26
Identity = 56/103 (54.37%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 10  DQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASR-DAGGTLPLP 69
           D  ++ GFE P+SP+++Y+N+ +G+ED +++PP+VPPHLQ TLL+ PA+  D    LP P
Sbjct: 157 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 216

Query: 70  QNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           Q+VILNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 217 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 259

[Close]

BLAST of HG10001347 vs. TAIR 10
Match: AT4G16360.2 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26
Identity = 56/103 (54.37%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 10  DQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASR-DAGGTLPLP 69
           D  ++ GFE P+SP+++Y+N+ +G+ED +++PP+VPPHLQ TLL+ PA+  D    LP P
Sbjct: 156 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 215

Query: 70  QNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           Q+VILNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 216 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 258

[Close]

BLAST of HG10001347 vs. TAIR 10
Match: AT4G16360.3 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26
Identity = 56/103 (54.37%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 10  DQTTVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASR-DAGGTLPLP 69
           D  ++ GFE P+SP+++Y+N+ +G+ED +++PP+VPPHLQ TLL+ PA+  D    LP P
Sbjct: 159 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRP 218

Query: 70  QNVILNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           Q+VILNHL+++  ++  SVVALG THRF +KYVTVVLYK + R
Sbjct: 219 QHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 261

[Close]

BLAST of HG10001347 vs. TAIR 10
Match: AT5G21170.1 (5'-AMP-activated protein kinase beta-2 subunit protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 50/99 (50.51%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 13  TVVGFEVPKSPDSTYNNVYIGSEDEARDPPLVPPHLQHTLLSQPASRDAGGTLPLPQNVI 72
           ++V FE P SPD +Y      +ED A++P  VPP L  TLL    + +       PQ+V+
Sbjct: 188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLL---GTTEETAIATKPQHVV 247

Query: 73  LNHLFIENRETPRSVVALGFTHRFHSKYVTVVLYKPVHR 112
           LNH+FIE   TP+S+VALG THRF SKY+TVVLYKP+ R
Sbjct: 248 LNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283

The following BLAST results are available for this feature:

BLAST of HG10001347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145755.1	4.0e-59	97.44	SNF1-related protein kinase regulatory subunit beta-3 [Cucumis sativus] >XP_0084...	[more]
XP_038902942.1	1.3e-57	96.58	SNF1-related protein kinase regulatory subunit beta-3 [Benincasa hispida] >XP_03...	[more]
XP_022958406.1	2.7e-55	93.04	SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita moschata] ...	[more]
XP_022996167.1	7.8e-55	92.17	SNF1-related protein kinase regulatory subunit beta-3-like [Cucurbita maxima] >X...	[more]
XP_022140750.1	1.7e-54	90.60	SNF1-related protein kinase regulatory subunit beta-3 [Momordica charantia] >XP_...	[more]

BLAST of HG10001347 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUU8	1.0e-36	64.35	SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX...	[more]
Q9SCY5	1.8e-25	54.37	SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX...	[more]
Q84VQ1	1.7e-20	50.51	SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX...	[more]
Q9QZH4	4.7e-10	37.89	5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=...	[more]
Q6PAM0	1.8e-09	36.84	5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus OX=10090 GN=Prkab...	[more]

BLAST of HG10001347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CP39	1.9e-59	97.44	SNF1-related protein kinase regulatory subunit beta-3 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7T1A3	1.9e-59	97.44	SNF1-related protein kinase regulatory subunit beta-3 isoform X2 OS=Cucumis melo...	[more]
A0A0A0KBG3	1.9e-59	97.44	AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G147560 PE=3...	[more]
A0A6J1H1Z8	1.3e-55	93.04	SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita moschata...	[more]
A0A6J1KA31	3.8e-55	92.17	SNF1-related protein kinase regulatory subunit beta-3-like OS=Cucurbita maxima O...	[more]

BLAST of HG10001347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28060.1	7.1e-38	64.35	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.1	1.3e-26	54.37	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.2	1.3e-26	54.37	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT4G16360.3	1.3e-26	54.37	5'-AMP-activated protein kinase beta-2 subunit protein	[more]
AT5G21170.1	1.2e-21	50.51	5'-AMP-activated protein kinase beta-2 subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006828	Association with the SNF1 complex (ASC) domain	SMART	SM01010	AMPKBI_2	coord: 20..109 e-value: 1.3E-29 score: 114.4
IPR006828	Association with the SNF1 complex (ASC) domain	PFAM	PF04739	AMPKBI	coord: 38..108 e-value: 1.2E-21 score: 76.8
None	No IPR available	GENE3D	6.20.250.60		coord: 12..109 e-value: 1.8E-24 score: 87.7
IPR043554	SNF1-related protein kinase regulatory subunit beta	PANTHER	PTHR46316	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1	coord: 1..115
IPR030067	SNF1-related protein kinase regulatory subunit beta-3	PANTHER	PTHR46316:SF5	SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-3	coord: 1..115
IPR037256	ASC domain superfamily	SUPERFAMILY	160219	AMPKBI-like	coord: 12..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001347.1	HG10001347.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043562	cellular response to nitrogen levels
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009744	response to sucrose
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0005515	protein binding