HG10001321 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001321
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cyclin-dependent kinases regulatory subunit
Location	Chr09: 16077122 .. 16078090 (+)
RNA-Seq Expression	HG10001321
Synteny	HG10001321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTTACGAGTACAGGTATTGCATTCTTACTCTTTCATTTTTCATCTTCATAGTTTCTCGCACTCTTGGAGGATTGTTTGGAACTGTTCATTCATTATCTTCAATGGCTAACTGGATTGATTGATGCAGGCATGTGGTTCTCCCACCCGAAGTGGCAAAGTTGCTTCCTAAGAATCGCCTGCTCTCGGAAGTAAGCAAGTTTGTCTTATTTAGTTTTGAATTTATGTATTTTGATTTTGTTACGGACGGAAGTATTCTCTGATTGCTTAGGAAGAAACTTAGTTCAATAGTTGGATTCTTAAATCAGGTTTAGGTATCACACTCGAGACTCTAAGAAATTGTTATTATACGGTAGACAGTTTCTTCCTCCTCTGTCTAAACTTTTGAAGTTTTCATATGATCTTGATATTCTCTCTTTGATTTGGCTGATGGTTGTATGAAAGGTGAAACGTTGTTTATGAATATTTCGCATAGAAATTCTATAGAAAAGGATTGAGAATCCAGGGCTTATGACTTTTTCATTAGACTAGATCTTCTCTGGCCTGCCAATCGTGGATTCTCTCTATGCAACTAGTGAGTAATGGACGCTGAGGTTGGGCATACTGCATAGGCACAGGAATATTATGATACCATCAATGCCTTTTGATTTTCTTGGCTTTCTTCTTGAACTCTAGCAATCGTTGTTCTAAGCAAAAGGGTGCTTCCCAAATCTGTTTGACAACTCATTTAATGGAAGCGTGCTGTTATACTCTTAGCCCTTTAATCTTATGTGCAGAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAATCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA

mRNA sequence

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTTACGAGTACAGGCATGTGGTTCTCCCACCCGAAGTGGCAAAGTTGCTTCCTAAGAATCGCCTGCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAATCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA

Coding sequence (CDS)

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTTACGAGTACAGGCATGTGGTTCTCCCACCCGAAGTGGCAAAGTTGCTTCCTAAGAATCGCCTGCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAATCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA

Protein sequence

MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK

Homology

[Close]

BLAST of HG10001321 vs. NCBI nr
Match: XP_038902899.1 (cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida])

HSP 1 Score: 188.0 bits (476), Expect = 3.6e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of HG10001321 vs. NCBI nr
Match: XP_022957804.1 (cyclin-dependent kinases regulatory subunit 1 [Cucurbita moschata] >XP_022996399.1 cyclin-dependent kinases regulatory subunit 1 [Cucurbita maxima] >XP_023534106.1 cyclin-dependent kinases regulatory subunit 1 isoform X3 [Cucurbita pepo subsp. pepo] >KAG6606027.1 Cyclin-dependent kinases regulatory subunit 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035974.1 Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.9 bits (468), Expect = 3.1e-43
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of HG10001321 vs. NCBI nr
Match: XP_022944260.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_023513375.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.1 bits (466), Expect = 5.2e-43
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDI+EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of HG10001321 vs. NCBI nr
Match: XP_022986411.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 85/89 (95.51%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDI+EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQN+LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNMLAAK 89

[Close]

BLAST of HG10001321 vs. NCBI nr
Match: XP_008465423.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Cucumis melo] >KAA0037300.1 cyclin-dependent kinases regulatory subunit 1-like [Cucumis melo var. makuwa] >TYK24184.1 cyclin-dependent kinases regulatory subunit 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQEN  QQN LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89

[Close]

BLAST of HG10001321 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-41
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQ 83
          EPHIMLFRRPLNYQQQQEN AQ
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]

BLAST of HG10001321 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-40
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of HG10001321 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-40
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of HG10001321 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-37
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

[Close]

BLAST of HG10001321 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-28
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 4  IQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+LPP+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of HG10001321 vs. ExPASy TrEMBL
Match: A0A6J1K8L9 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111491633 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of HG10001321 vs. ExPASy TrEMBL
Match: A0A6J1H322 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111459235 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of HG10001321 vs. ExPASy TrEMBL
Match: A0A6J1FYK0 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111448764 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.5e-43
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDI+EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of HG10001321 vs. ExPASy TrEMBL
Match: A0A6J1JB14 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111484154 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.6e-43
Identity = 85/89 (95.51%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDI+EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQN+LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNMLAAK 89

[Close]

BLAST of HG10001321 vs. ExPASy TrEMBL
Match: A0A5D3DKQ6 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1754G00180 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.4e-43
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQEN  QQN LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89

[Close]

BLAST of HG10001321 vs. TAIR 10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1 )

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-42
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQ 83
          EPHIMLFRRPLNYQQQQEN AQ
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]

BLAST of HG10001321 vs. TAIR 10
Match: AT2G27970.1 (CDK-subunit 2 )

HSP 1 Score: 156.8 bits (395), Expect = 8.3e-39
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

The following BLAST results are available for this feature:

BLAST of HG10001321 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902899.1	3.6e-44	100.00	cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida]	[more]
XP_022957804.1	3.1e-43	97.75	cyclin-dependent kinases regulatory subunit 1 [Cucurbita moschata] >XP_022996399...	[more]
XP_022944260.1	5.2e-43	96.63	cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_0235...	[more]
XP_022986411.1	1.2e-42	95.51	cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima]	[more]
XP_008465423.1	1.5e-42	96.63	PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Cucumis melo] >KA...	[more]

BLAST of HG10001321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23249	1.7e-41	95.12	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XCH8	3.3e-40	95.06	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
Q6PS57	3.3e-40	95.06	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SJJ5	1.2e-37	89.74	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P55933	2.9e-28	80.30	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

BLAST of HG10001321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8L9	1.5e-43	97.75	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1H322	1.5e-43	97.75	Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1FYK0	2.5e-43	96.63	Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JB14	5.6e-43	95.51	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A5D3DKQ6	7.4e-43	96.63	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of HG10001321 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27960.1	1.2e-42	95.12	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	8.3e-39	89.74	CDK-subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 75.9 coord: 3..17 score: 64.1 coord: 18..32 score: 62.05 coord: 55..69 score: 76.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 e-value: 1.9E-46 score: 170.3
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 e-value: 2.3E-35 score: 120.7
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 1..83 e-value: 1.1E-39 score: 136.7
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 1..83
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..86
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001321.1	HG10001321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0007346	regulation of mitotic cell cycle
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity