HG10001304 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001304
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr09: 15918342 .. 15920945 (+)
RNA-Seq ExpressionHG10001304
SyntenyHG10001304
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTAAAAGCCAACCCTAACCTTCTCGTTCTTAAACCTTGTGCGGACATTTCCAAGCTCCTTGTCGACTCGGAGCCTCTCCTGCTCTTTATTCTGGCAATTACGAATGTCGCTGATGAAAACGGCGAGGCCTCTCATACCGGACAACGCCATCTCCGCTCAGATCCAGCCGGAAAGACACAATCTCTTCAGTTCCCTATCCTAGATCCCCGCGCTCCACCAGCGGATCTGACGGAACCAAGCAGCACAGCTACTCGAAATAAGACGAACTCCAATTCAAAGTCCGGGTAATACAGCCGAGAAACAATTCAAATATCTACGGTTTGATCCAGAACGAAGAGCGAAAAATGTAGAGATGAAGAGGAAGATCGAGAAATTGATGGAGTGAGGAAAATTGGCAAAGCGGTCGACGGGAAAGTGGCAGGCAGCAGAGACGACTTTTATTTTACCTCCATCAAAGCCTGAAATTTCAACCAGAAATGATCCCTCATCAAATTGTTTGTTTTTTTTATATATTTTTTATTAATTTCCTCCATTTTTAACACTTTTGAATTCGCACTCGCTGGAGTTTTGTTTAACCCGTATTTACAGTTTAAACTAAACAAAATTAAACTCGCTTTTCTCCTTCTAGTTTTTTTATCTTTTTCTTTTTTATTTTAGAATAAAATGTTTTTTTTTATAATAAAAATGAGTTGTTTTCGAATACAGTAAACTAAAAAAAATTAAACTTGCTTTTTTCTTCGTAGTTTTTTTCTTTTTTTTCTTTTTATTTTATAATAAAAATGAGTTGTTTTCAAATATATAAAAAAAATGAGTCAAACTATTTATAAGTATAGAAAAATTTCATTGTCTATTAGCAATAGACCGCGATAGATTTATCGCCATCTATCGCGGATAAACAATGAAATTTTTCTATATCTATAAATAATTTGGTATTTTTTATATTTATAATTATTTTTCTAAAAAAACTTGAGTTGCACCTACTTTTATTCCACTCATCTAAATATCATATGACAAGTTGTCATATGGTAAAGTTTTTTTTTAAATAAGATATTTATTTTTTAATATATTTTTTTCGCTTTGAATTGATACATAAAAATAAATATAGATGTCGAGAAAGCTATATTTGAAAATTTTTAAGTAATTGATACGGACATTTTGCTACATTTGAAAATATTTTTAATATTTTTATCATTTAAAATAATTATCTATTTTGATTCTTAAATTTTAATGACAAATTAATAGGTCATTTAAAAGAAATGCATTATAGGAATATGCTTCCAAAATTTATAGTAAAAAAGTGCAATAGATTATAGTTTTTCTAAAAAGAAAATCAAGGATTTGTTGAAAATACATAAAGTTAAACATTTAAAAGTATATGGACTAAAATTGAACAATTCACGAACCATAGAGACCAAAATGATAGTTTAACATAAATTTAAAATATTAACTCTAATGACTACAAAGATGTTTATGAAAGTATATTCATCTTAAATATAGCTCGATTAGTTTAGACATCTACTATCGACTTAGAGATCAATGTTCAAATTTTTCAATCTTAATTGTTTTGTTGTGTTAGAAAAGAATGTGTAGAGTATAAATTACGGGAAATTTTCACATATAGAAAAAATGTCAAACTATTTACAGAAAATAGCAAAAAAAAAACATTGATAGACATTGATAGACTTCTATCAGTATCTATCAGCGATAGACTTCTATCATTTCTATTACTGATAGACCCTGATAGACTTCTATAAGTGTCTATCACAACTATCTAAAAAATTTGTTATTTTGTGTAAATAGTTTTCCTTGTTTTTCTACTTTTAAAAATTCCCCATAAATTAGTGTTGTTAATATTCATTATACTTTTTTTTTAGATTTATAAACTTTTGAATCTTTTAAATATGTTGTCCTTGGAAAAGAAAATCTCATTTTAGTCCATTAATTTTAAATTAAAATTTTCAAAATATTGACTTCAAAACTTTCAAAATAATTGTTATAATCCTTCAAAGTCTTTACTCAAAATACTACAAATGTTCAATTTTATATCCAAAGCTTTGGAGAACGATTAATTATATCAATAAAACTCAAGTGAATTAATTTATACCTTCTGTGAAATTTCATTTTAAAACCGTTAATTAAATGCAAAGATTAATTTACTACTTGAGAAAAATAGTATAATCAAGTAGCTATTAACAAATTTGATTCTTTTTTTTTTTATCTTCTAATGTTTCGCTATTCTTTTTTAATTTATTAAAAAGAATTTATCAAAATGAGCATAACTCTAGTATCAAAAGTCAGACATTCGATTCTTCTTACGTATAATAAAAAAAAAACTATTTAAAAAGAATTATATCATCATTTTATGCAATTTGAAATTGCTAAAAGTTGGTCTAACGGGACAAGTTTAGAGATATAAATGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATCTCATCGGTATCATCTTCATCACAAGTGACGATCGAGCTAGAGAATTCAATACAGGAGCGTATTCCACTTTTGGGCGGAAATTGAAGAAGGTCGCCGCCCGTACACCGACATTAATGGCCGGCGAGCGGCGGTTTCTTTAG

mRNA sequence

ATGCAAGTAAAAGCCAACCCTAACCTTCTCGTTCTTAAACCTTGTGCGGACATTTCCAAGCTCCTTGTCGACTCGGAGCCTCTCCTGCTCTTTATTCTGGCAATTACGAATGTCGCTGATGAAAACGGCGAGGCCTCTCATACCGGACAACGCCATCTCCGCTCAGATCCAGCCGGAAAGACACAATCTCTTCAGTTCCCTATCCTAGATCCCCGCGCTCCACCAGCGGATCTGACGGAACCAAGCAGCACAGCTACTCGAAATAAGACGAACTCCAATTCAAAGTCCGGAACGAAGAGCGAAAAATGTAGAGATGAAGAGGAAGATCGAGAAATTGATGGAGTGAGGAAAATTGGCAAAGCGGTCGACGGGAAAAATCTCATCGGTATCATCTTCATCACAAGTGACGATCGAGCTAGAGAATTCAATACAGGAGCGTATTCCACTTTTGGGCGGAAATTGAAGAAGGTCGCCGCCCGTACACCGACATTAATGGCCGGCGAGCGGCGGTTTCTTTAG

Coding sequence (CDS)

ATGCAAGTAAAAGCCAACCCTAACCTTCTCGTTCTTAAACCTTGTGCGGACATTTCCAAGCTCCTTGTCGACTCGGAGCCTCTCCTGCTCTTTATTCTGGCAATTACGAATGTCGCTGATGAAAACGGCGAGGCCTCTCATACCGGACAACGCCATCTCCGCTCAGATCCAGCCGGAAAGACACAATCTCTTCAGTTCCCTATCCTAGATCCCCGCGCTCCACCAGCGGATCTGACGGAACCAAGCAGCACAGCTACTCGAAATAAGACGAACTCCAATTCAAAGTCCGGAACGAAGAGCGAAAAATGTAGAGATGAAGAGGAAGATCGAGAAATTGATGGAGTGAGGAAAATTGGCAAAGCGGTCGACGGGAAAAATCTCATCGGTATCATCTTCATCACAAGTGACGATCGAGCTAGAGAATTCAATACAGGAGCGTATTCCACTTTTGGGCGGAAATTGAAGAAGGTCGCCGCCCGTACACCGACATTAATGGCCGGCGAGCGGCGGTTTCTTTAG

Protein sequence

MQVKANPNLLVLKPCADISKLLVDSEPLLLFILAITNVADENGEASHTGQRHLRSDPAGKTQSLQFPILDPRAPPADLTEPSSTATRNKTNSNSKSGTKSEKCRDEEEDREIDGVRKIGKAVDGKNLIGIIFITSDDRAREFNTGAYSTFGRKLKKVAARTPTLMAGERRFL
Homology
[Close]
BLAST of HG10001304 vs. NCBI nr
Match: KAF7823289.1 (AP-2 complex subunit alpha-2 [Senna tora])

HSP 1 Score: 71.2 bits (173), Expect = 9.5e-09
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 4  KANPNLLVLKPCADISKLLVDSEPLLLFILAITNVADENGEASHTGQRHLRSDPAGKTQS 63
          + NPNLLV +  +D+S+LLVD EP LLF+L I +V DE+GE SH  Q H+R DPAG+   
Sbjct: 5  RKNPNLLVFEAGSDVSQLLVDPEPFLLFVLTIADVTDEDGETSHPRQGHVRVDPAGERNP 64

Query: 64 LQ 66
          L+
Sbjct: 65 LR 66

[Close]
BLAST of HG10001304 vs. NCBI nr
Match: CAA7027714.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-04
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 4  KANPNLLVLKPCADISKLLVDSEPLLLFILAITNVADENGEASHTGQRHLR-SDPAGKTQ 63
          + +PNLL+ + C  +S+LL++SE L L +LAITNVADE GE+SH+G      SDP   T 
Sbjct: 5  RESPNLLIFEACTYVSELLINSESLRLLVLAITNVADEYGESSHSGHGGANSSDPPFTTA 64

Query: 64 S-LQFPILDPRAPPADLTEPSSTATRNKTNSNSK 96
          S  Q  +  P     DLT  + TA  +   SNS+
Sbjct: 65 SGRQIQVAKP-----DLT-TTETADYSSRISNSQ 92

[Close]
BLAST of HG10001304 vs. ExPASy TrEMBL
Match: A0A6D2IM65 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS14949 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 4  KANPNLLVLKPCADISKLLVDSEPLLLFILAITNVADENGEASHTGQRHLR-SDPAGKTQ 63
          + +PNLL+ + C  +S+LL++SE L L +LAITNVADE GE+SH+G      SDP   T 
Sbjct: 5  RESPNLLIFEACTYVSELLINSESLRLLVLAITNVADEYGESSHSGHGGANSSDPPFTTA 64

Query: 64 S-LQFPILDPRAPPADLTEPSSTATRNKTNSNSK 96
          S  Q  +  P     DLT  + TA  +   SNS+
Sbjct: 65 SGRQIQVAKP-----DLT-TTETADYSSRISNSQ 92

The following BLAST results are available for this feature:
BLAST of HG10001304 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7823289.19.5e-0954.84AP-2 complex subunit alpha-2 [Senna tora][more]
CAA7027714.14.1e-0443.62unnamed protein product [Microthlaspi erraticum][more]
BLAST of HG10001304 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10001304 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6D2IM652.0e-0443.62Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS14949 ... [more]
BLAST of HG10001304 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001304.1HG10001304.1mRNA