HG10000988 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000988
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Epidermal patterning factor-like protein
Location	Chr09: 12871469 .. 12871895 (-)
RNA-Seq Expression	HG10000988
Synteny	HG10000988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCACAAAGGCATTATTAGTTCTGCAGGTCGCTGCTGTAGTACTCCTCCTCCTCCTCCTCCTCCTACTCCCACCAGCCATGCCCGCCAGACAACTCTCAGTCTCAACTCGTACGTACCAGCTCTATTAAAATAACCTCATTTTTCCAATCATTTGTCAAACAAAATTGCATTTTTAAACAAACCCATATCATAAAATTGATTATATATTATGCAGATAATAATAATGGTAAGCCCCGAATGAGAGGAGAGACAGTGGAAATTGCAGGATCGAGATTACCAGATTGTTCTCATGCTTGTGGGTCCTGCTCCCCCTGCAGGCTTGTCATGGTTAGGTTCTTTTGTGCTTCAGTTGAAGATTCAGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGA

mRNA sequence

ATGAAATCCACAAAGGCATTATTAGTTCTGCAGGTCGCTGCTGTAGTACTCCTCCTCCTCCTCCTCCTCCTACTCCCACCAGCCATGCCCGCCAGACAACTCTCAGTCTCAACTCATAATAATAATGGTAAGCCCCGAATGAGAGGAGAGACAGTGGAAATTGCAGGATCGAGATTACCAGATTGTTCTCATGCTTGTGGGTCCTGCTCCCCCTGCAGGCTTGTCATGGTTAGGTTCTTTTGTGCTTCAGTTGAAGATTCAGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGA

Coding sequence (CDS)

ATGAAATCCACAAAGGCATTATTAGTTCTGCAGGTCGCTGCTGTAGTACTCCTCCTCCTCCTCCTCCTCCTACTCCCACCAGCCATGCCCGCCAGACAACTCTCAGTCTCAACTCATAATAATAATGGTAAGCCCCGAATGAGAGGAGAGACAGTGGAAATTGCAGGATCGAGATTACCAGATTGTTCTCATGCTTGTGGGTCCTGCTCCCCCTGCAGGCTTGTCATGGTTAGGTTCTTTTGTGCTTCAGTTGAAGATTCAGAGACTTGTCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGA

Protein sequence

MKSTKALLVLQVAAVVLLLLLLLLLPPAMPARQLSVSTHNNNGKPRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAYKCMCSHKSFPVP

Homology

[Close]

BLAST of HG10000988 vs. NCBI nr
Match: KAG7034925.1 (Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 2.7e-30
Identity = 72/106 (67.92%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MKSTKALLVLQVAAVVLLLLLLLLLPPAMPARQLSVSTHNNNGKPRMRGETVEIAGSRLP 60
           M  TKA     +  V +LL+++L +P AMPAR L      +N   R+RGETVE+AGSRLP
Sbjct: 1   MTPTKA----SILVVAVLLIVILQVPTAMPARHLP----PHNSPKRVRGETVEVAGSRLP 60

Query: 61  DCSHACGSCSPCRLVMVRFFCASVEDSETCPLAYKCMCSHKSFPVP 107
           DCSHACGSC+PCRLVMVR+FC+SVEDSETCPLAYKCMCSHKSFPVP
Sbjct: 61  DCSHACGSCAPCRLVMVRYFCSSVEDSETCPLAYKCMCSHKSFPVP 98

[Close]

BLAST of HG10000988 vs. NCBI nr
Match: XP_009117463.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Brassica rapa] >XP_013664293.1 protein EPIDERMAL PATTERNING FACTOR 1 [Brassica napus] >RID48142.1 hypothetical protein BRARA_I04679 [Brassica rapa] >CAF2050050.1 unnamed protein product [Brassica napus] >CAG7866665.1 unnamed protein product [Brassica rapa] >CDY13853.1 BnaA09g43550D [Brassica napus] >VDC63642.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 38  THNNNG---KPRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAY 97
           +HNN+    K + R +TV++AGSRLPDCSHACGSCSPCRLVMV F CAS+E++ETCP+AY
Sbjct: 31  SHNNHHVGMKRQRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASIEEAETCPMAY 90

Query: 98  KCMCSHKSFPVP 107
           KCMC +KS+PVP
Sbjct: 91  KCMCKNKSYPVP 102

[Close]

BLAST of HG10000988 vs. NCBI nr
Match: KAF2589428.1 (hypothetical protein F2Q70_00041489 [Brassica cretica])

HSP 1 Score: 114.8 bits (286), Expect = 4.6e-22
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 27  PAMPARQLSVSTHNNNGKPRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVED 86
           P  P+    V       K + R +TV++AGSRLPDCSHACGSCSPCRLVMV F CAS+E+
Sbjct: 27  PPYPSHNHHVGMMTRKMKRQRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASLEE 86

Query: 87  SETCPLAYKCMCSHKSFPVP 107
           +ETCP+AYKCMC +KS+PVP
Sbjct: 87  AETCPMAYKCMCKNKSYPVP 106

[Close]

BLAST of HG10000988 vs. NCBI nr
Match: XP_031106759.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Ipomoea triloba])

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-22
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 13  AAVVLLLLLLLLLPPAMPARQLSVSTHNNN------------GKP-----RMRGETVEIA 72
           AA +L+++LLL  P AMPAR++     N              G+      + RG+T+EIA
Sbjct: 6   AATLLIIILLLFSPFAMPARRIGKFNPNERHGGEESSAAAQLGRKTTMMMQKRGDTLEIA 65

Query: 73  GSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAYKCMCSHKSFPVP 107
           GSRLPDCSHACGSC PCRLVMV F C+++E++ETCP+AYKCMC +KS+P+P
Sbjct: 66  GSRLPDCSHACGSCHPCRLVMVSFVCSTLEEAETCPMAYKCMCHNKSYPIP 116

[Close]

BLAST of HG10000988 vs. NCBI nr
Match: XP_002517955.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Ricinus communis] >EEF44473.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 31  ARQLSVSTHNN---NGKPRMR--GETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVE 90
           AR++ V+  NN     +P  R  G+TVEIAGS LPDCSHACGSCSPCRLVMV F C+S+E
Sbjct: 44  AREVVVANPNNYYRERRPAKRRGGDTVEIAGSSLPDCSHACGSCSPCRLVMVSFVCSSLE 103

Query: 91  DSETCPLAYKCMCSHKSFPVP 107
           ++ETCP+AYKCMC +KS+PVP
Sbjct: 104 EAETCPMAYKCMCRNKSYPVP 124

[Close]

BLAST of HG10000988 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-24
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 14  AVVLLLLLLLLLPPAMPARQLSVSTHNNN---------GKPRMRGETVEIAGSRLPDCSH 73
           +++LL   L     ++ AR L  S+H ++          + R R +TV++AGSRLPDCSH
Sbjct: 3   SLLLLAFFLSFFFGSLLARHLPTSSHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCSH 62

Query: 74  ACGSCSPCRLVMVRFFCASVEDSETCPLAYKCMCSHKSFPVP 107
           ACGSCSPCRLVMV F CASVE++ETCP+AYKCMC++KS+PVP
Sbjct: 63  ACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of HG10000988 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-10
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 55  AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAYKCMCSHKSFPVP 107
           +GS +PDCS+ACG C PC+LV++   C++   SE CPL YKC+C  K + VP
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

[Close]

BLAST of HG10000988 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-09
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 38  THNNNGKPRMRGETVEI--AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAYK 97
           TH+     +  G  +E+   GS LPDCS+ACG+CSPC+ VM+ F C+    +E+C + Y+
Sbjct: 50  THHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYR 109

Query: 98  CMCSHKSFPVP 107
           C C  + + VP
Sbjct: 110 CTCRGRYYHVP 117

[Close]

BLAST of HG10000988 vs. ExPASy TrEMBL
Match: A0A397Y3J3 (Epidermal patterning factor-like protein OS=Brassica campestris OX=3711 GN=BRAA09T41253Z PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 38  THNNNG---KPRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAY 97
           +HNN+    K + R +TV++AGSRLPDCSHACGSCSPCRLVMV F CAS+E++ETCP+AY
Sbjct: 31  SHNNHHVGMKRQRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASIEEAETCPMAY 90

Query: 98  KCMCSHKSFPVP 107
           KCMC +KS+PVP
Sbjct: 91  KCMCKNKSYPVP 102

[Close]

BLAST of HG10000988 vs. ExPASy TrEMBL
Match: M4EQS2 (Epidermal patterning factor-like protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 38  THNNNG---KPRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAY 97
           +HNN+    K + R +TV++AGSRLPDCSHACGSCSPCRLVMV F CAS+E++ETCP+AY
Sbjct: 31  SHNNHHVGMKRQRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASIEEAETCPMAY 90

Query: 98  KCMCSHKSFPVP 107
           KCMC +KS+PVP
Sbjct: 91  KCMCKNKSYPVP 102

[Close]

BLAST of HG10000988 vs. ExPASy TrEMBL
Match: A0A078FNB7 (Epidermal patterning factor-like protein OS=Brassica napus OX=3708 GN=BnaA09g43550D PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 38  THNNNG---KPRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAY 97
           +HNN+    K + R +TV++AGSRLPDCSHACGSCSPCRLVMV F CAS+E++ETCP+AY
Sbjct: 31  SHNNHHVGMKRQRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASIEEAETCPMAY 90

Query: 98  KCMCSHKSFPVP 107
           KCMC +KS+PVP
Sbjct: 91  KCMCKNKSYPVP 102

[Close]

BLAST of HG10000988 vs. ExPASy TrEMBL
Match: B9RW36 (Epidermal patterning factor-like protein OS=Ricinus communis OX=3988 GN=RCOM_1175720 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 31  ARQLSVSTHNN---NGKPRMR--GETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVE 90
           AR++ V+  NN     +P  R  G+TVEIAGS LPDCSHACGSCSPCRLVMV F C+S+E
Sbjct: 44  AREVVVANPNNYYRERRPAKRRGGDTVEIAGSSLPDCSHACGSCSPCRLVMVSFVCSSLE 103

Query: 91  DSETCPLAYKCMCSHKSFPVP 107
           ++ETCP+AYKCMC +KS+PVP
Sbjct: 104 EAETCPMAYKCMCRNKSYPVP 124

[Close]

BLAST of HG10000988 vs. ExPASy TrEMBL
Match: A0A5K0VPJ5 (Epidermal patterning factor-like protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS2323 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 46/73 (63.01%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 34  LSVSTHNNNGKPRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLA 93
           L+  T   +G+PR   +T+++AGS LPDCSHACGSCSPCR VMV F CA++E++ETCP+A
Sbjct: 25  LTEGTQGRHGRPRAAADTLQVAGSSLPDCSHACGSCSPCRRVMVSFVCATLEEAETCPMA 84

Query: 94  YKCMCSHKSFPVP 107
           YKCMC+ KS+PVP
Sbjct: 85  YKCMCNSKSYPVP 97

[Close]

BLAST of HG10000988 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 )

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-25
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 14  AVVLLLLLLLLLPPAMPARQLSVSTHNNN---------GKPRMRGETVEIAGSRLPDCSH 73
           +++LL   L     ++ AR L  S+H ++          + R R +TV++AGSRLPDCSH
Sbjct: 3   SLLLLAFFLSFFFGSLLARHLPTSSHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCSH 62

Query: 74  ACGSCSPCRLVMVRFFCASVEDSETCPLAYKCMCSHKSFPVP 107
           ACGSCSPCRLVMV F CASVE++ETCP+AYKCMC++KS+PVP
Sbjct: 63  ACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of HG10000988 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). )

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-11
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 55  AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAYKCMCSHKSFPVP 107
           +GS +PDCS+ACG C PC+LV++   C++   SE CPL YKC+C  K + VP
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

[Close]

BLAST of HG10000988 vs. TAIR 10
Match: AT1G34245.1 (Putative membrane lipoprotein )

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-10
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 38  THNNNGKPRMRGETVEI--AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSETCPLAYK 97
           TH+     +  G  +E+   GS LPDCS+ACG+CSPC+ VM+ F C+    +E+C + Y+
Sbjct: 50  THHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYR 109

Query: 98  CMCSHKSFPVP 107
           C C  + + VP
Sbjct: 110 CTCRGRYYHVP 117

The following BLAST results are available for this feature:

BLAST of HG10000988 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034925.1	2.7e-30	67.92	Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_009117463.1	2.7e-22	69.44	protein EPIDERMAL PATTERNING FACTOR 1 [Brassica rapa] >XP_013664293.1 protein EP...	[more]
KAF2589428.1	4.6e-22	62.50	hypothetical protein F2Q70_00041489 [Brassica cretica]	[more]
XP_031106759.1	7.9e-22	52.25	protein EPIDERMAL PATTERNING FACTOR 1 [Ipomoea triloba]	[more]
XP_002517955.1	1.3e-21	65.43	protein EPIDERMAL PATTERNING FACTOR 1 [Ricinus communis] >EEF44473.1 conserved h...	[more]

BLAST of HG10000988 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8I4	5.1e-24	54.90	Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE...	[more]
C4B8C5	4.2e-10	51.92	EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q8LC53	6.1e-09	40.85	Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE...	[more]

BLAST of HG10000988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A397Y3J3	1.3e-22	69.44	Epidermal patterning factor-like protein OS=Brassica campestris OX=3711 GN=BRAA0...	[more]
M4EQS2	1.3e-22	69.44	Epidermal patterning factor-like protein OS=Brassica rapa subsp. pekinensis OX=5...	[more]
A0A078FNB7	1.3e-22	69.44	Epidermal patterning factor-like protein OS=Brassica napus OX=3708 GN=BnaA09g435...	[more]
B9RW36	6.5e-22	65.43	Epidermal patterning factor-like protein OS=Ricinus communis OX=3988 GN=RCOM_117...	[more]
A0A5K0VPJ5	6.5e-22	63.01	Epidermal patterning factor-like protein (Fragment) OS=Nymphaea colorata OX=2102...	[more]

BLAST of HG10000988 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20875.1	3.7e-25	54.90	epidermal patterning factor 1	[more]
AT1G71866.1	3.0e-11	51.92	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Put...	[more]
AT1G34245.1	4.3e-10	40.85	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 55..104 e-value: 5.0E-15 score: 55.2
None	No IPR available	PANTHER	PTHR33109:SF41	PROTEIN EPIDERMAL PATTERNING FACTOR 1	coord: 37..106
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 37..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000988.1	HG10000988.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:2000122	negative regulation of stomatal complex development
biological_process	GO:0010375	stomatal complex patterning
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region