HG10000838 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000838
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA polymerase I-specific transcription initiation factor RRN3
Location	Chr09: 10004148 .. 10010736 (+)
RNA-Seq Expression	HG10000838
Synteny	HG10000838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTGGAATTGGCAAATGGTCAAGCTCAGTTGCACGATATGGAGGGTGTTAATCTCACAGATGCCCAGTTAGTTGATTTCTTTAGGGGGTTTCTTAGTTCAGTGTCGCTGGTATTGTTCTCTTAACATCATTATTGGTCTTTGCTTAAAAAAGAGAACATATAGCATTCAAATTACGAATTGCACTCTGTTAGTTTATTATTTGGGTTGAATATGCTTCTGAGTTCTCACTGCTAATCATGTTGTTTTTCGAGGAATAACTGTAGTAACCTTATAATAGCTCTTCCATTGGTGTAGGGAAATAATGATGGGTATAACCAGCTTGTCGGTGTTATACACCGCAGGGATCGACTAACCGCCGATGAGGTTGCCTTGCTCGTGGTATGTCCTCTACATCACATCTGTTTTTGACAATGATACGAGATTTAATTTCATACTAACTTCTTTCTAATTTTTAACTCACTTGATGTGCTTAACAGACATGTTTGAAGGCACTATCTGGCGCAGTTTCTTGTATAGATATCATTCTCCATGAATCTCTTCTTGCAGCAGTAAGTTTATCACTGAACTCCGAGTCATTGTCTTGCAATTTCGTTGTTGTAATGGAAGTTCTTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCTAACGTGATGGATACCCTGATTGAACTAATAATATCCCTGGTATGAGCATTTATGATAATAAAACTCTCACTCTCTCAAGGTTCACCTAATAGTTCCAAGATCTTGTGTCTCTTTGTCTATTCAATGTTTCAGGCTGTTTCAAGTGGAACATATGTGGATTCATGCTTGGATATGCTTGTAAATAATTTCATGCCGCCCTATTCCTACAAGGATTTCCTGAAGAAACCACATGGGCTTACCAGAAAGGATGAAGTTCTTTCTCGAGTGCATACAGCTCTAAAAGACATCTCGGACTTGGTGCCTCTTGCACCCTTGAGATTAGAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTGTGAGTTGAATTTTCATGGGCTAACAGTTGCCCAGGAGAAATCTAAGTGAAAATTTTGTTTATTTCTCACTGACTATTATTGTTATTTTTATCTGTGTAATGTTTTCTAAAATTTTTTGCTAATTTTGGTTTTTTTTTAAAAAAAAATTTCTAGCATCCTTTTCTTTTTCATGACTATCAATTCAATGACAATTAGAAGTTTGGTGTGAAGCTGAAAGCCCATTATTTATTTGCATGCTTTGGCACACTGAAGTATTAGATGGCAATATTATTATCATTAAAATACCCTACTGGATATAGTTCAAACTAGAACAATGCCTGATTATGATTTATAGTTGAAATGCAATGTATGTTTACTAGATACTAGATTTGTACAATCTTTGAACCTACGAACTCCTCTTAAATTTTGTGAATAAATTTGTTCATACGATCCAGATAGCTAGGCCATTTAAAGAGTCATGTATCATAAAGATGACTACATTTTCAAAAGCCCTGATTTTGAGATTTTTTACAGATGTTTCTTGCTTGCTTAGAAGACAGAGATTGCTTTGATTTCTTTTTGGAATATTTTTTAAAACTTGTCGCCTATTTCATCTCCAAAACATTTGCACTCTTTTTAGGAATTTGTTTTGTGATTGTGTCTAACACTTACATCTGTTTAACCTCTCTGTAGTTGACCACAATATATGTAGAAAACATGTTGAGGTTGGAAAAAGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTTTAGATTTGGATGTACGTTGAAACAAATATTTTACTACACTGACATTTGTTTATGTGATTACTTTATCATTAATATTAATGAGTTCTAACCTTCTGGTAGGTGGAGATTGGGTGGGATGATATCCTACAAGAGGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACTACAGATGATATTAATGAGGATTCTAGTGAGGTATGATATTTAATATCTAGGCTGGATTAAAAAAACTAAAATGTATTTTTAAAAAAAAAATGGAAGAAAAAGAAGAAGAAAAAGAAGAAAAGAAGGATATCTTTAAAAAGCCATCGAGGCTTATGCCCTGAGGCTCATCTCTAGGCAAGACTAACTTTTTCCTCAAGATTTACATATTCATTGAACTAGAAGAGGCTCCTTGGTAAAAATGCATTGAGGCTTAAAACTGTTACACCTCGTGTAATGATTAGAAGAATAATATTTGATTTGTCATTCTTTAAAAATATAGAGGTTTGAATTGTGTCAATTTGGACTATTACTACTTTTAGTAATGTGACTATGAAAACATTGAAGATAATAAATTAGTCTTAGTCAATCATATTAATGATAATAGTAGTGATGTTATAGATATCATTTTTAAATATTTTTGTTTAAGTGGCAATTGATGGAGTGAACTTTTTATACTTTTATGACTATCAACTATCATTTTCAACTTGGTCATACCAATTTAAGCTTTGTAAAATGTTTTTAATTAAATTTGAGGCTTACAACCTTGCCTCTTCAAGAGGAAAAGCCTCAAGACTACCTTTAGTCTTTTAAAGCAATTTGATATTTGATTCATTAGACGCTTTGATGTTTAAATTCTAGTCTTCTAGTATATGAAGTAATGGATCTGAAGTATATTCCTTCGCTTGAAGCTAATTGTCTTTTGGGTCTACAAAGTTTATACTCTAGCTGAGTCAGTTTTTTAACTTACATTTTGACTTTTCTGCCATACATCTCGATACTTCTTTTAATTCATGCTGTTATTTGCTTGGCTGAGTTTAAGTTTATTTTGCTAGCTTCAAAGAGAACTAAGTCGGAAGAGCTTAGGTGGAAATGTAATTGCTGAAACTTTAGATAGCTTGATTGGTCTAATATTTGAACATCTTGAATCATGTGAACGTGATTATTTGCTTGGCTGATTGTTTATTTTGCTAGCTTCAAAGAGGTCGAAGAGCTTAGGTGGAAATGTAATTGCTGAAACTTTAGATAGCTTGATTGGTCTAATATTTCATCTTGAATCATTCCTTGAATGAGGTACCTTGTGTAGTTTCTATAATTTTCCTTCTTTTGTTCTCAATTTCGTTGTTTTATTCTGCAAATGAGAATTTTTTCCATGTTCCTTTAATGTGGAGGTTAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCCCAGGTAAGAAACATGCCCTTGCCATAATTCTCAATGATTGCTTATTTACTCTGGTTTAGTGGGCTCTCATTTTATATAATTTTTCTTGTTTATGGAGATTGAATGACTTGGCAGTTTTTCTTTTGATGCTTTTTCTTGGCAGTTTGTCATATTCTATGCATGTGCATCAGATCCTGAAGTTTGTGGTGTGAGATTTGCCGTTTGGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCGCTTACCAGGTATTAGCAATTCATTAGAAAGCTCTCTCTCTTTTGGATATGGAACAAATTTCGTTAGTTAATTTTGCCTTTGAAGCTATGTTTCACTAGCGTTTGAAAGCTTCATAAAAGATCTGAATGTGGGATCAACATAGTTAATTTTGCCTCTGCTTTTTACAACACTTTCTTTGCTCATTTATTAGCCATTTAAATTGAATCTCATTTCCAAGGCCTTCATCTAAGAAATCTACAACTAACAAGCGTGGGAGTTGAGTTTCTCTCTCTTTCTGTCTCTCTTATTATTATTATTATTTTATTTTAGGGTTTTAAGGTTTATGGTTTCTTTTATCTACCTACCTACCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCTATCTAAGAAAATAAAAGAAATCCCTCTTTAAATAGAAAATTTTGCACTTGCATGAACCTATTAAACTTGTACTACCGTAGAGGTTTAAATGTTTGTGATTTGAGATGGGAAGAAAGCAAGTAGTTACTTTGGAATTCTATCTGATTTACATCAATTGTTTGGTAGCCTTGTACGTGAAATATAATTTTACAACATCACACTGTTTCACACACTAGTGGCCCCCAGTTTGACCCTCGGCTCAAACACATGTTTTCATTTTTTTTTATATAAAAATGAAATTAAATAATATGTATTTTTGAGTCTGGTTTGAACCTGAGCTCAAACACGTTTTCCTTCTTTTCTAATATAAAAATGAAATGAAATTATATGTGTTTGTGGTATTGTGCAGGATGAGTGCCGTGTCATATCTTGCGAGTTATTTGTCTCGTGGGAAGTTTTTGTCAACCTCTTTGGTTACTACTATATTGAAAAGGTTAACTTGTCAACTTCAACTATGTTTCTGTGATGAAAAATATGAAACTGATAAAATTAAAGCAGGGAGGGTTTGTTGCTCTAAGTCTAGTTTTGCTTCTCATTTTTTTCAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACACAGGATGTTGACCCAAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGTATACAATGCTTGGACTCCTTTTTGCTAGACTAAGGCACGTGGGATTTGTTGAAAAACGGGGAAATAGTGTTTATGCTTCTGGAAGTGCTGTTATTTGTACTTTTCAGTTATGCTTATGATGACTTAGGTTTTTGTTTTGTTAAAACTAGGAAACAGATTTTACTGATATTAATAAAATTCACATCCCCTTTATGGAAAACAGTTTTCTTTATCACAGTAATTTTTGGTTGCTTTTGAATGTAAATCCTTTTCATTTTTATTTTTACTCTGATTAAAAGTCTGTTATTATTCTTTTTTTAAAAAAAAGTCCATTTGGGAGAAATGGAGTAGTATTTTTCTCGTTACTTTCCCACTCCAACCCCACTAACATGAAGAGAGGAAAAAAAAAAAAAAAACCGAGATTATTGTTCTAATTTCCTCCCACCGAAAAACCCTAAAATGGCTTTTTAATTTTTTTAATTTTATTATTAGTATTTTAAATTATCCCTCGTTGAACCCTAAAGAAATAAAAATGCACTTTGAAATATCGATTCAATTCTAACACTTAGAATTGCTTCTTGGAAGATGAATTTCATGGATGTTTGGTCAATTAGAAAATCTGGCGTTAGCAGTTTTTTGTTTACAAGATTTAGAACTTTTTTTTTTAATGATTTCTTTTCCACAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGCCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTGGGTAATTGGTTGACCCCTTGGTCTTTGATGGTTTTTGTTTTGTTATAAATTTGTCTGTTAGTTGTTCCTTGTCCTTGAAATCAATTTTTATGCTCTGAATACCGAGTGACCATATGGGACTATGAGTTGTCTGAAGCATCAAATTGGAAACTTCATTACTTTTCAATTGATGCTATAAAAACATTAATCTCCCTAATGGAAATCTTACCCATGCATTAAGTTACAATTGTTTGGAAGTTCACATATTGGCCTTGGAGCTTTACATCTTTAATTTGTAATTCCACCTCCTCTCCAGTGCCTCATAATATCGAATCTACAAATCTGGGCTTTCTGCTATTGTGGTGATGCTGTGTTATTAACCTCCAAAAAGATTTAACTACTGTCTGAAGCTCTGTTCTGTGCAATTTTCTTGTATGCATATTATTTTAACGCCTTTTTGTTTAACAGGTTTGCTTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTGTCACCATCAGAGACTTTTATATTCAATGGTTTGCTGGAGTCTGAATATTCAAAGACTTTTGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGATCCTTGCTTATTGAAAACATGTGACAGGTTTTCACTCTCAGTCTTGATCATCCTTATTTCCTTTAAAACAACAAAGGATAGATAGATAAAACCATTAAAACCATTAAAAATTTGGATACACGCAGAAGAATTATAAAAGGCCACACAGAATAGAATTGCAAGTTAAAATCATTCTGCCTGCTTATTGTGGATAGATTGCTTTATATTCATAATGATTGATTGGAATGAGTGAGATCGCTTGAGAACTTGAAGTTGTAAGAATGTTTCGTTTGATTCATTTTTTTCAAATTATTAACTCATGCTTTATTATTCCCCTTTGTCTATGAAGATATCTACGGCCACATTTTGTATATTGGTGGATGGTCAGACCTACCTATGATGATGAAGAAGAAGAAGATGGCGGTAGCAGTGATGAAGATATTGCAGAAGTTTTTCCAGATAGAATTGAGAAAAACCTTATGGACGTTGAAGAAATGGGAAGAAGCTACGACGATAGAGATTTTGATCTTGATACATTTGATTCTGCATTAAACAGAATGTCCATCACACCAAGAAATTCTCTTCAGTATCAGCGAGATTTTGTTCAAATGCCCTCGCGAATCCAACCCTTGATGAGTCCAGAATCTCTGTGA

mRNA sequence

ATGGGGGTGGAATTGGCAAATGGTCAAGCTCAGTTGCACGATATGGAGGGTGTTAATCTCACAGATGCCCAGTTAGTTGATTTCTTTAGGGGGTTTCTTAGTTCAGTGTCGCTGGGAAATAATGATGGGTATAACCAGCTTGTCGGTGTTATACACCGCAGGGATCGACTAACCGCCGATGAGGTTGCCTTGCTCGTGACATGTTTGAAGGCACTATCTGGCGCAGTTTCTTGTATAGATATCATTCTCCATGAATCTCTTCTTGCAGCAGTAAGTTTATCACTGAACTCCGAGTCATTGTCTTGCAATTTCGTTGTTGTAATGGAAGTTCTTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCTAACGTGATGGATACCCTGATTGAACTAATAATATCCCTGGCTGTTTCAAGTGGAACATATGTGGATTCATGCTTGGATATGCTTGTAAATAATTTCATGCCGCCCTATTCCTACAAGGATTTCCTGAAGAAACCACATGGGCTTACCAGAAAGGATGAAGTTCTTTCTCGAGTGCATACAGCTCTAAAAGACATCTCGGACTTGGTGCCTCTTGCACCCTTGAGATTAGAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTTTGACCACAATATATGTAGAAAACATGTTGAGGTTGGAAAAAGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTTTAGATTTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGAGGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACTACAGATGATATTAATGAGGATTCTAGTGAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCCCAGTTTGTCATATTCTATGCATGTGCATCAGATCCTGAAGTTTGTGGTGTGAGATTTGCCGTTTGGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCGCTTACCAGGATGAGTGCCGTGTCATATCTTGCGAGTTATTTGTCTCGTGGGAAGTTTTTGTCAACCTCTTTGGTTACTACTATATTGAAAAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACACAGGATGTTGACCCAAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGCCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTTTGCTTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTGTCACCATCAGAGACTTTTATATTCAATGGTTTGCTGGAGTCTGAATATTCAAAGACTTTTGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGATCCTTGCTTATTGAAAACATGTGACAGACCTACCTATGATGATGAAGAAGAAGAAGATGGCGGTAGCAGTGATGAAGATATTGCAGAAGTTTTTCCAGATAGAATTGAGAAAAACCTTATGGACGTTGAAGAAATGGGAAGAAGCTACGACGATAGAGATTTTGATCTTGATACATTTGATTCTGCATTAAACAGAATGTCCATCACACCAAGAAATTCTCTTCAGTATCAGCGAGATTTTGTTCAAATGCCCTCGCGAATCCAACCCTTGATGAGTCCAGAATCTCTGTGA

Coding sequence (CDS)

ATGGGGGTGGAATTGGCAAATGGTCAAGCTCAGTTGCACGATATGGAGGGTGTTAATCTCACAGATGCCCAGTTAGTTGATTTCTTTAGGGGGTTTCTTAGTTCAGTGTCGCTGGGAAATAATGATGGGTATAACCAGCTTGTCGGTGTTATACACCGCAGGGATCGACTAACCGCCGATGAGGTTGCCTTGCTCGTGACATGTTTGAAGGCACTATCTGGCGCAGTTTCTTGTATAGATATCATTCTCCATGAATCTCTTCTTGCAGCAGTAAGTTTATCACTGAACTCCGAGTCATTGTCTTGCAATTTCGTTGTTGTAATGGAAGTTCTTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCTAACGTGATGGATACCCTGATTGAACTAATAATATCCCTGGCTGTTTCAAGTGGAACATATGTGGATTCATGCTTGGATATGCTTGTAAATAATTTCATGCCGCCCTATTCCTACAAGGATTTCCTGAAGAAACCACATGGGCTTACCAGAAAGGATGAAGTTCTTTCTCGAGTGCATACAGCTCTAAAAGACATCTCGGACTTGGTGCCTCTTGCACCCTTGAGATTAGAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTTTGACCACAATATATGTAGAAAACATGTTGAGGTTGGAAAAAGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTTTAGATTTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGAGGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACTACAGATGATATTAATGAGGATTCTAGTGAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCCCAGTTTGTCATATTCTATGCATGTGCATCAGATCCTGAAGTTTGTGGTGTGAGATTTGCCGTTTGGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCGCTTACCAGGATGAGTGCCGTGTCATATCTTGCGAGTTATTTGTCTCGTGGGAAGTTTTTGTCAACCTCTTTGGTTACTACTATATTGAAAAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACACAGGATGTTGACCCAAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGCCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTTTGCTTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTGTCACCATCAGAGACTTTTATATTCAATGGTTTGCTGGAGTCTGAATATTCAAAGACTTTTGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGATCCTTGCTTATTGAAAACATGTGACAGACCTACCTATGATGATGAAGAAGAAGAAGATGGCGGTAGCAGTGATGAAGATATTGCAGAAGTTTTTCCAGATAGAATTGAGAAAAACCTTATGGACGTTGAAGAAATGGGAAGAAGCTACGACGATAGAGATTTTGATCTTGATACATTTGATTCTGCATTAAACAGAATGTCCATCACACCAAGAAATTCTCTTCAGTATCAGCGAGATTTTGTTCAAATGCCCTCGCGAATCCAACCCTTGATGAGTCCAGAATCTCTGTGA

Protein sequence

MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTADEVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLWDYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSSEVFDILLLSFQRTVLTAYKSKFAQFVIFYACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPFDPCLLKTCDRPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMGRSYDDRDFDLDTFDSALNRMSITPRNSLQYQRDFVQMPSRIQPLMSPESL

Homology

[Close]

BLAST of HG10000838 vs. NCBI nr
Match: KAA0048966.1 (RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var. makuwa])

HSP 1 Score: 1005.0 bits (2597), Expect = 2.8e-289
Identity = 536/652 (82.21%), Postives = 563/652 (86.35%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MG EL N QAQLHDME VNLTDAQLVDF RGFLSSVSLG+ DGYNQLVGVIH RDRL+ D
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDII HESLLAAVSL LNSESLSCNFVVVMEVLSQIFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAVSLCLNSESLSCNFVVVMEVLSQIFKMSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD+LIELIISLAVS+G YV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSS---------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFEMELEDDDETTDDINEDSS          
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 -------------------------------EVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                          EVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+ DPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+T +VDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANL +PSETFIFNGLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCD-------------RPTY--DDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEE 597
           DPCLLK CD             RPTY  ++E+EEDGGSSDED AEVFPD IE+NLMD   
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

[Close]

BLAST of HG10000838 vs. NCBI nr
Match: XP_038896673.1 (RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa hispida])

HSP 1 Score: 993.4 bits (2567), Expect = 8.3e-286
Identity = 527/649 (81.20%), Postives = 546/649 (84.13%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MG E  NGQAQLHDME VNLTDAQLVDF RGFLSSVSLG+NDGYNQL+GVIH +DRL+ D
Sbjct: 1   MGAEFENGQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLIGVIHHKDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           E+ALLVTCLKALSGAVSCIDIILHESLL+A                       IFKMSLW
Sbjct: 61  EIALLVTCLKALSGAVSCIDIILHESLLSA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELIISLAVSSG YVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS
Sbjct: 121 DYGPNVMDALIELIISLAVSSGNYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSS---------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFEMELEDDDET DD NEDSS          
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETADDSNEDSSELPRELSRKS 300

Query: 301 -------------------------------EVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                          EVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACA  PEVCG RFAV LADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVT+ILKRL
Sbjct: 361 ACALYPEVCGERFAVSLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTSILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYGKT DV+PNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL
Sbjct: 421 VDWCLEYGKTLDVEPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQAKVANL +PSET++FNGLLES+YS+TFGGIERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSETYVFNGLLESDYSRTFGGIERLDMFFPF 540

Query: 541 DPCLLKTCD-------------RPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMG 596
           DPCLLK CD             RPTY DEEE DGGSSDED+AEVFPDRIE+NLMD E M 
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTY-DEEEGDGGSSDEDVAEVFPDRIEENLMDDEAMA 600

[Close]

BLAST of HG10000838 vs. NCBI nr
Match: XP_038901148.1 (RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa hispida])

HSP 1 Score: 989.6 bits (2557), Expect = 1.2e-284
Identity = 527/650 (81.08%), Postives = 545/650 (83.85%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MGVEL  GQAQLHDMEGVNLTDAQLVDF RGFLSSVSLG+NDGYNQLVGVIH +DRLT +
Sbjct: 1   MGVELEKGQAQLHDMEGVNLTDAQLVDFVRGFLSSVSLGDNDGYNQLVGVIHHKDRLTPE 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDI+LHESLLAA                       IFK SLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAA-----------------------IFKRSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYG NVMD LIELIISLAVSSG YVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS
Sbjct: 121 DYGRNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDI DLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVE+MLRLEKGAMSEFVGRK
Sbjct: 181 RVHTALKDILDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVESMLRLEKGAMSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSS---------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFEMEL DDDETT+DINE SS          
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELADDDETTEDINEASSELPRELSRKS 300

Query: 301 -------------------------------EVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                          EVFD+LLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNIIAETLDSLIVLTFEHLESCERDGRLNEVFDVLLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACA DPEVCG RFAVWLADMFVSCNDPPLTRM AVSYLASYLSRGKFLSTSLVT ILKRL
Sbjct: 361 ACALDPEVCGARFAVWLADMFVSCNDPPLTRMKAVSYLASYLSRGKFLSTSLVTIILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYGKT DVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLL+PIGPVL
Sbjct: 421 VDWCLEYGKTLDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLIPIGPVL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQA+VANL SPSETFIFNGLLESEYS+TFGGIERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLRQAEVANLFSPSETFIFNGLLESEYSQTFGGIERLDMFFPF 540

Query: 541 DPCLLKTCD-------------RPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMG 597
           DPCLLKTCD             RPTYD  EEE GGSSDED+AEVFPDRIE+NLMD E + 
Sbjct: 541 DPCLLKTCDRYLRPHFVYWSMVRPTYD--EEEYGGSSDEDVAEVFPDRIEENLMDDEAVA 600

[Close]

BLAST of HG10000838 vs. NCBI nr
Match: KAG7011106.1 (RNA polymerase I-specific transcription initiation factor RRN3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 966.5 bits (2497), Expect = 1.1e-277
Identity = 512/650 (78.77%), Postives = 542/650 (83.38%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MGVEL NGQAQ  DMEGVN TD QLVDF RGFL+SVSLGN DGY+QLVGVIH RDRL+AD
Sbjct: 123 MGVELENGQAQFQDMEGVNFTDDQLVDFIRGFLTSVSLGNTDGYHQLVGVIHHRDRLSAD 182

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCID++LHESLLAA                       IFKMSLW
Sbjct: 183 EVALLVTCLKALSGAVSCIDVVLHESLLAA-----------------------IFKMSLW 242

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELI SLAVSSG YVDSCLDMLV NFMPP+SYKDFLKKPHGLTRKDEVLS
Sbjct: 243 DYGPNVMDALIELITSLAVSSGKYVDSCLDMLVTNFMPPHSYKDFLKKPHGLTRKDEVLS 302

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLE IVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK
Sbjct: 303 RVHTALKDISDLVPLAPLRLELIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 362

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSS---------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFE+ELEDD+E+TDDI+EDSS          
Sbjct: 363 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEIELEDDNESTDDIDEDSSELPRELSRKS 422

Query: 301 -------------------------------EVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                          EVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 423 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 482

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACA DPEVCG RFAV LADMFVSCN  PLTRMSA+SYLASYLSRGKFLSTSLVTTILKRL
Sbjct: 483 ACALDPEVCGARFAVTLADMFVSCNGLPLTRMSAISYLASYLSRGKFLSTSLVTTILKRL 542

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYGKT DVD NPKAHK+FYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIG +L
Sbjct: 543 VDWCLEYGKTHDVDLNPKAHKIFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGRIL 602

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQAKVANL +PSETFIFNGLLESEYSKTFGGIERLDMFFP+
Sbjct: 603 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTFGGIERLDMFFPY 662

Query: 541 DPCLLKTCD-------------RPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMG 597
           DPCLLK CD             RPTYD+EEEED GSSDED+AEVFPD+IE+NLMD E M 
Sbjct: 663 DPCLLKRCDRYLRPYFVYWSMVRPTYDEEEEEDEGSSDEDVAEVFPDKIEENLMDDEAMA 722

[Close]

BLAST of HG10000838 vs. NCBI nr
Match: KAG7035298.1 (RNA polymerase I-specific transcription initiation factor RRN3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 966.5 bits (2497), Expect = 1.1e-277
Identity = 515/653 (78.87%), Postives = 546/653 (83.61%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MG+EL NGQAQ  DMEGVN TD+QLVDF RGFLSSVSLGN DGYNQLVGVIH R+RL+ D
Sbjct: 1   MGMELENGQAQFQDMEGVNFTDSQLVDFIRGFLSSVSLGNTDGYNQLVGVIHHRERLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKAL GAVS ID  LHESLLA VSLSLNS S+SCNFVVVMEVL QIFKMSLW
Sbjct: 61  EVALLVTCLKALCGAVSFIDNALHESLLAGVSLSLNSVSVSCNFVVVMEVLFQIFKMSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD L+ELI SLAVSSG YVDSCLDMLVNNFMPP+ YKD LKKPHGL RKDEV S
Sbjct: 121 DYGPNVMDALVELITSLAVSSGKYVDSCLDMLVNNFMPPHYYKDLLKKPHGLIRKDEVFS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLEQIVV+KMQRVFFKESLT++YVENMLRLEKG++SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVNKMQRVFFKESLTSVYVENMLRLEKGSLSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDS----------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFE+ELEDDDE TDDINEDS           
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEIELEDDDEITDDINEDSIELPSELSRKS 300

Query: 301 ------------------------------SEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                         +EVF+ILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LTGNVIAETLDSLIVLTFEHLESCERDGRLNEVFEILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACA DPEVCG RFAV LADMF+SCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL
Sbjct: 361 ACALDPEVCGARFAVMLADMFISCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYGKTQ VD NPKAHK       AIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGKTQHVDLNPKAHK-------AIMYVLCFRMRSILEIPRLKSQLLLMPIGPIL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRL PLKVCLPSIVEEFLR+A  ANL +PSETFIFNGLLESEYSKTFGG+ERLDMFFPF
Sbjct: 481 THRLGPLKVCLPSIVEEFLRKANDANLFTPSETFIFNGLLESEYSKTFGGMERLDMFFPF 540

Query: 541 DPCLLKTCD-------------RPTYDDEE---EEDGGSSDEDIAEVFPDRIEKNLMDVE 597
           DPCLLK CD             RP+YD+EE   ++D GSSDED+AEVFPDRIE+NLMD E
Sbjct: 541 DPCLLKRCDRYLRPYFVYWSMVRPSYDEEEDDDDDDDGSSDEDVAEVFPDRIEENLMDDE 600

[Close]

BLAST of HG10000838 vs. ExPASy Swiss-Prot
Match: B2RS91 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus OX=10090 GN=Rrn3 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-24
Identity = 128/521 (24.57%), Postives = 216/521 (41.46%), Query Frame = 0


Query: 109 EVLSQIFKMSLWDYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKK 168
           ++++ I ++   +    V++  +  + +L  +   ++  CL M+ ++F+PP      + K
Sbjct: 106 QLINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPP----RVIVK 165

Query: 169 PHGLTRKDE---------VLSRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTT 228
             G+   D          +    H AL+ I+  VP  P  L  I+V K   V   E    
Sbjct: 166 EGGIDVSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFVRKSERTLE 225

Query: 229 IYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQ-----------EDFSK 288
            YV N+LR+        + R+IL  +++KLL LDV +   DI              D ++
Sbjct: 226 CYVHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKAAQTCGGTDTTE 285

Query: 289 GIFEMELEDDDETTD---------------------------------DI--------NE 348
           G+F M   D+DE TD                                 D+        N 
Sbjct: 286 GLFNM---DEDEDTDPEKKADQEQPNQMAHPTAERLDVLLCLLLSYIEDVCRVHGKIDNN 345

Query: 349 DSSEVFDILLLSFQRTVLTAYKSKFAQFVIFYACASDPEVCGVRFAVWLADMFV------ 408
            + +++  L+  F + +L  + S   QF +F+ C+         F +  A+ F+      
Sbjct: 346 KTKDLYRDLISIFDKLLLPTHASCHVQFFMFFLCS---------FKLGFAEAFLEHLWKK 405

Query: 409 --SCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTQDVDP----N 468
               N+P + R +A +Y+ S+L+R KF+    V T L  LV+W   Y   QD       +
Sbjct: 406 LQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMYLTNQDSGTKAFCD 465

Query: 469 PKAHKVFYSGCQAIMYVLCFRMRSIL--EIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSI 528
              H  FYS CQA+ Y + FR + +L   + +    L  +    ++  +L+PLK+CLP +
Sbjct: 466 VALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQV 525

Query: 529 VEEFLRQAKVANLLSPSETFIFNG-LLESEYSKTFGG------IERLDMFFPFDPCLLKT 545
           V  F        L+        N   +      T GG         LD FFPFDPC+LK 
Sbjct: 526 VNFFAAITNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKR 585

[Close]

BLAST of HG10000838 vs. ExPASy Swiss-Prot
Match: Q5R4N9 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii OX=9601 GN=RRN3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-21
Identity = 133/518 (25.68%), Postives = 212/518 (40.93%), Query Frame = 0


Query: 109 EVLSQIFKMSLWDYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPP-YSYKDFLK 168
           E L  I     W     V++  +  + +L  +   ++  CL M+ ++F+PP    K+   
Sbjct: 107 EQLISIILRLPWLKSQTVVEEYLAFLANLVSAQTVFLRPCLGMIASHFVPPRVIIKEGDV 166

Query: 169 KPHGLTRKDEVL----SRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVE 228
                  +D+ L       H AL+ I+  VP  P  L  I+V K   V   E     YV 
Sbjct: 167 DVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVH 226

Query: 229 NMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQ-----------EDFSKGIFE 288
           N+LR+        +  +IL  +++KLL LDV     DI              D ++G+F 
Sbjct: 227 NLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLFN 286

Query: 289 MELEDD--------DETTDDINEDSSEVFDILL---LS---------------------- 348
           M+ +++         E  D +    +E  DIL+   LS                      
Sbjct: 287 MDEDEETEHETKAGPERLDQMVHPVAECLDILMSLVLSYMKDVCYVDGQVDNGKTKDLYR 346

Query: 349 -----FQRTVLTAYKSKFAQFVIFYACASDPEVCGVRFAVWLADMFV--------SCNDP 408
                F + +L+ + S   QF +FY C+         F +  A+ F+          ++P
Sbjct: 347 DLINIFDKLLLSTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDPSNP 406

Query: 409 PLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTQDVDP----NPKAHKVF 468
            + R +A +Y+ S+L+R KF+    V + L  LV+W   Y   QD       +   H  F
Sbjct: 407 AIIRQAAGNYIGSFLARAKFIPLITVRSCLDLLVNWLHIYLNNQDSGTKAFCDVALHGPF 466

Query: 469 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMP---IGPVLTHRLSPLKVCLPSIVEEFLR 528
           YS CQA+ Y   FR + +L    LK  L  +       ++  +L+PLK+CLPS+V  F  
Sbjct: 467 YSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFEWIVMSQLNPLKICLPSVVNFF-- 526

Query: 529 QAKVANLLSPSETFIF----NGLLESEYSKTFGG------IERLDMFFPFDPCLLKTCDR 545
            A + N       +      N  +      T GG         LD FFPFDPC+LK   +
Sbjct: 527 -AAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSKK 586

[Close]

BLAST of HG10000838 vs. ExPASy Swiss-Prot
Match: Q9NYV6 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens OX=9606 GN=RRN3 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-20
Identity = 129/520 (24.81%), Postives = 218/520 (41.92%), Query Frame = 0


Query: 109 EVLSQIFKMSLWDYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPP-YSYKDFLK 168
           +++S I ++   +    V++  +  + +L  +   ++  CL M+ ++F+PP    K+   
Sbjct: 108 QLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDV 167

Query: 169 KPHGLTRKDEVL----SRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVE 228
                  +D+ L       H AL+ I+  VP  P  L  I+V K   V   E     YV 
Sbjct: 168 DVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVH 227

Query: 229 NMLRLEKGAMSEFVGRKILTALVDKLLDLDVEI---GWDDILQ--------EDFSKGIFE 288
           N+LR+        +  +IL  +++KLL LDV     G +D  +         D ++G+F 
Sbjct: 228 NLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFN 287

Query: 289 MELEDDDETTD---------------------DI--------------------NEDSSE 348
           M   D+DE T+                     DI                    N  + +
Sbjct: 288 M---DEDEETEHETKAGPERLDQMVHPVAERLDILMSLVLSYMKDVCYVDGKVDNGKTKD 347

Query: 349 VFDILLLSFQRTVLTAYKSKFAQFVIFYACASDPEVCGVRFAVWLADMFV--------SC 408
           ++  L+  F + +L  + S   QF +FY C+         F +  A+ F+          
Sbjct: 348 LYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEHLWKKLQDP 407

Query: 409 NDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTQDVDP----NPKAH 468
           ++P + R +A +Y+ S+L+R KF+    V + L  LV+W   Y   QD       +   H
Sbjct: 408 SNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLNNQDSGTKAFCDVALH 467

Query: 469 KVFYSGCQAIMYVLCFRMRSIL--EIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEF 528
             FYS CQA+ Y   FR + +L   +      L  +    ++  +L+PLK+CLPS+V  F
Sbjct: 468 GPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFF 527

Query: 529 LRQAKVANLLSPSETFIF----NGLLESEYSKTFGG------IERLDMFFPFDPCLLKTC 545
              A + N       +      N  +      T GG         LD FFPFDPC+LK  
Sbjct: 528 ---AAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRS 587

[Close]

BLAST of HG10000838 vs. ExPASy Swiss-Prot
Match: Q10110 (RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrn3 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-18
Identity = 130/532 (24.44%), Postives = 221/532 (41.54%), Query Frame = 0


Query: 85  ESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW-DYGPNVMDTLIELIISLAVSSGT 144
           ++LL+A++ ++ S   S N  +VM VL      S+W     + +      + +L  +   
Sbjct: 96  QNLLSALTCNV-SRLDSSNSSLVMSVLD-----SVWVSRDESFVRCYTRFLGNLISAQSN 155

Query: 145 YVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDISDLVPLAPLRLEQI 204
           Y+   + ML+ +          L +P  L    E     H ALK + +LVP A   L   
Sbjct: 156 YLPLVMTMLIQH---------MLYRPDSLAIHYE---HAHMALKYVLELVPRAHSFLYSS 215

Query: 205 VVHKMQRVFFKESLTT--IYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDI 264
           ++ +    +  ESL     Y+ N+L + +   S  +   +L A++DK++ +DVEI     
Sbjct: 216 ILEEFP--YKDESLLAQMTYISNVLSICEYVPS--IKGPVLHAIIDKIIQIDVEI----- 275

Query: 265 LQEDFSKGIFEMELEDDDETTDDINED------------------------SSE------ 324
                     ++E++DDDE  D++  D                        SSE      
Sbjct: 276 ----------QVEVDDDDEEEDEVVTDDDGTSNADSEVITASTLYERHTAISSEMTSSTI 335

Query: 325 ----------------------------------------VFDILLLSFQRTVLTAYKSK 384
                                                   V++ L+ SF  TVL  ++ +
Sbjct: 336 LTPPSLTDTRQLMQQLDQLLYTLFSYLDSNLKSTSRDRYLVYNSLIKSFVNTVLKTFRCR 395

Query: 385 FAQFVIFYACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSL 444
           + QF+IF+A   DPE   +   V L ++ +  + P   R+S   Y+ SY++R K L  + 
Sbjct: 396 YTQFLIFWASQLDPEFTDIFLGV-LTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKNT 455

Query: 445 VTTILKRLVDWC---LEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSIL---EIPR 504
           +  I+  +  W    L+  + +  D     H VFY+  Q+I Y+ CFR R +    E   
Sbjct: 456 IQIIVNMMTRWVEAYLDQCENELSDDLLSKHSVFYAINQSIFYIFCFRWRELCVSDESES 515

Query: 505 LKSQLLLMPIGPVLTH-----RLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLE 520
           ++ +      G  + H     RL+PL+ C P+IV +F   AKVAN L  +  ++++ + +
Sbjct: 516 MEPRPNEWIPGLEILHRSVLSRLNPLRYCSPNIVLQF---AKVANHL--NFMYVYSIIEQ 575

[Close]

BLAST of HG10000838 vs. ExPASy Swiss-Prot
Match: Q2M238 (Putative RRN3-like protein RRN3P1 OS=Homo sapiens OX=9606 GN=RRN3P1 PE=5 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-10
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 344 NDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTQDVDP----NPKAH 403
           ++P + R +A +Y+ S+L+R KF+S   V   L  LV+W   Y   QD       +   H
Sbjct: 19  SNPAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHIYLNNQDSGTKAFCDVALH 78

Query: 404 KVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLL---MPIGPVLTHRLSPLKVCLPSIVEE 463
             FYS CQA+ Y   FR + +L    LK  L     +    ++  +L+PLK+CLPS+V  
Sbjct: 79  GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYPQSLNFERIVMSQLNPLKICLPSVVNF 138

[Close]

BLAST of HG10000838 vs. ExPASy TrEMBL
Match: A0A5A7U3Y2 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001870 PE=3 SV=1)

HSP 1 Score: 1005.0 bits (2597), Expect = 1.3e-289
Identity = 536/652 (82.21%), Postives = 563/652 (86.35%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MG EL N QAQLHDME VNLTDAQLVDF RGFLSSVSLG+ DGYNQLVGVIH RDRL+ D
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDII HESLLAAVSL LNSESLSCNFVVVMEVLSQIFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAVSLCLNSESLSCNFVVVMEVLSQIFKMSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD+LIELIISLAVS+G YV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSS---------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFEMELEDDDETTDDINEDSS          
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 -------------------------------EVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                          EVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+ DPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+T +VDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANL +PSETFIFNGLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCD-------------RPTY--DDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEE 597
           DPCLLK CD             RPTY  ++E+EEDGGSSDED AEVFPD IE+NLMD   
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

[Close]

BLAST of HG10000838 vs. ExPASy TrEMBL
Match: A0A6J1F0A3 (RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438313 PE=3 SV=1)

HSP 1 Score: 956.4 bits (2471), Expect = 5.4e-275
Identity = 510/650 (78.46%), Postives = 539/650 (82.92%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MGVEL NGQAQ  DMEGVN TD QLVDF RGFL+SVSLGN DGY+QLVGVIH R RL+AD
Sbjct: 1   MGVELENGQAQFQDMEGVNFTDDQLVDFIRGFLTSVSLGNTDGYHQLVGVIHHRGRLSAD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCID++LHESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDVVLHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELI SLAVSSG YVDSCLDMLV NFMPP+SYKDFLKKPHGLTRKDEVLS
Sbjct: 121 DYGPNVMDALIELITSLAVSSGKYVDSCLDMLVTNFMPPHSYKDFLKKPHGLTRKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLE IVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLELIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDS----------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFE+ELEDD+E+TDDI+EDS           
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEIELEDDNESTDDIDEDSSELPRELSRKS 300

Query: 301 ------------------------------SEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                         SEVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLSEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACA DPEVCG RFAV LADMFVSCN  PLTRMSA+SYLASYLSRGKFLSTSLVTTILKRL
Sbjct: 361 ACALDPEVCGARFAVTLADMFVSCNGLPLTRMSAISYLASYLSRGKFLSTSLVTTILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYGKT DVD NPKAHK+FYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIG +L
Sbjct: 421 VDWCLEYGKTHDVDLNPKAHKIFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGRIL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQAKVANL +PSETFIFNGLLESEYSKTFGGIERLDMFFP+
Sbjct: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTFGGIERLDMFFPY 540

Query: 541 DPCLLKTCD-------------RPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMG 597
           DPCLLK CD             RPTY DEEEED GSSDED+AEVFPD+IE+NLMD E M 
Sbjct: 541 DPCLLKRCDRYLRPYFVYWSMVRPTY-DEEEEDEGSSDEDVAEVFPDKIEENLMDDEAMA 600

[Close]

BLAST of HG10000838 vs. ExPASy TrEMBL
Match: A0A1S3AV30 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo OX=3656 GN=LOC103483270 PE=3 SV=1)

HSP 1 Score: 954.5 bits (2466), Expect = 2.1e-274
Identity = 514/652 (78.83%), Postives = 541/652 (82.98%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MG EL N QAQLHDME VNLTDAQLVDF RGFLSSVSLG+ DGYNQLVGVIH RDRL+ D
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDII HESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD+LIELIISLAVS+G YV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSS---------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFEMELEDDDETTDDINEDSS          
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 -------------------------------EVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                          EVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+ DPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+T +VDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANL +PSETFIFNGLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCD-------------RPTY--DDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEE 597
           DPCLLK CD             RPTY  ++E+EEDGGSSDED AEVFPD IE+NLMD   
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

[Close]

BLAST of HG10000838 vs. ExPASy TrEMBL
Match: A0A5D3D051 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004710 PE=3 SV=1)

HSP 1 Score: 954.5 bits (2466), Expect = 2.1e-274
Identity = 514/652 (78.83%), Postives = 541/652 (82.98%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MG EL N QAQLHDME VNLTDAQLVDF RGFLSSVSLG+ DGYNQLVGVIH RDRL+ D
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDII HESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD+LIELIISLAVS+G YV+SCLDMLVNNFMPP SY DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSS---------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFEMELEDDDETTDDINEDSS          
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 -------------------------------EVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                          EVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+ DPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+T +VDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANL +PSETFIFNGLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCD-------------RPTY--DDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEE 597
           DPCLLK CD             RPTY  ++E+EEDGGSSDED AEVFPD IE+NLMD   
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

[Close]

BLAST of HG10000838 vs. ExPASy TrEMBL
Match: A0A6J1IFT9 (RNA polymerase I-specific transcription initiation factor RRN3-like OS=Cucurbita maxima OX=3661 GN=LOC111472381 PE=3 SV=1)

HSP 1 Score: 951.4 bits (2458), Expect = 1.8e-273
Identity = 509/650 (78.31%), Postives = 537/650 (82.62%), Query Frame = 0


Query: 1   MGVELANGQAQLHDMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTAD 60
           MGVE  NGQAQ  DMEGVN TD QLVDF RGFL+SVSLGN DGY+QLVGVIH RDRL+AD
Sbjct: 1   MGVEFENGQAQFQDMEGVNFTDDQLVDFIRGFLTSVSLGNTDGYHQLVGVIHHRDRLSAD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCID++LHESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDVVLHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELI SLAVSSG YVDSCLDMLV NFMPP+SYKDFLKKPHGLTRKDEVLS
Sbjct: 121 DYGPNVMDALIELITSLAVSSGKYVDSCLDMLVTNFMPPHSYKDFLKKPHGLTRKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVHTALKDISDLVPLAPLRLE IVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLELIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETTDDINEDSS---------- 300
           ILTALVDKLLDLDVEIGWDDILQ+DFSKGIFE+ELEDD+E+TDDI+EDSS          
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEIELEDDNESTDDIDEDSSELPRELSRKS 300

Query: 301 -------------------------------EVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
                                          EVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACASDPEVCGVRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACA D EVCG RFAV LADMF+S N  PLTRMSA+SYLASYLSRGKFLSTSLVTTILKRL
Sbjct: 361 ACALDLEVCGARFAVTLADMFISRNGLPLTRMSAISYLASYLSRGKFLSTSLVTTILKRL 420

Query: 421 VDWCLEYGKTQDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYGKT DVD NPKAHK+FYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIG +L
Sbjct: 421 VDWCLEYGKTHDVDLNPKAHKIFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGRIL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQAKVANL +PSETFIFNGLLESEYSKTFGGIERLDMFFP+
Sbjct: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTFGGIERLDMFFPY 540

Query: 541 DPCLLKTCD-------------RPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMG 597
           DPCLLK CD             RPTY DEEEED GSSDED+AEVFPD+IE+NLMD E M 
Sbjct: 541 DPCLLKRCDRYLRPYFVYWSMVRPTY-DEEEEDEGSSDEDVAEVFPDKIEENLMDDEAMA 600

[Close]

BLAST of HG10000838 vs. TAIR 10
Match: AT2G34750.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 476.1 bits (1224), Expect = 4.1e-134
Identity = 287/639 (44.91%), Postives = 397/639 (62.13%), Query Frame = 0


Query: 15  MEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHR--RDRLTADEVALLVTCLKAL 74
           ++ V+L+D QLV   R  L+SV  G++D Y+++VGV+ R  ++    D VA L T LKAL
Sbjct: 20  VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLKAL 79

Query: 75  SGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLWDYGPNVMDTLIE 134
           SGAV+CID++ H+ LL+A                       +F+M LWD+ P+VMD L+ 
Sbjct: 80  SGAVACIDVLHHQKLLSA-----------------------LFRMKLWDHRPDVMDALVN 139

Query: 135 LIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDISDL 194
           L+ISLAV+SG Y+DSCL+MLV+NF+PP    + L     L +K +VLSRVH AL  IS L
Sbjct: 140 LVISLAVTSGKYLDSCLNMLVSNFVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISIL 199

Query: 195 VPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDL 254
           VPL P RL  ++  +M ++  K+    IYVE++L+LE  ++ +  G  IL  ++++L DL
Sbjct: 200 VPLTPSRLVPMLFQQMPKMHKKDHSIVIYVESLLKLENSSIGQVGGSMILGMVMERLRDL 259

Query: 255 DVEIGWDDILQEDFSKGIFEMELED---------DDETTDDINEDSS------------- 314
           D+EI WDDI Q+D S+G+F+MELED         D+     + +D+S             
Sbjct: 260 DLEIEWDDIPQDDSSRGMFDMELEDAAEGTMNDGDELPVGPLKQDTSDGSIVSKLLDKLM 319

Query: 315 -----------------EVFDILLLSFQRTVLTAYKSKFAQFVIFYACASDPEVCGVRFA 374
                            +VF+ L  SF+  +L  YKSKF QF+IFYAC+ DPE CGV+FA
Sbjct: 320 VVAFEHLESCQNDGRLDQVFESLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGVKFA 379

Query: 375 VWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTQDVD 434
             L ++F+S N    TRMSAV+YLAS+L+RGKFL  S V ++LKRL+D C+ Y +T + D
Sbjct: 380 SKLVEIFLSSNKHVATRMSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDD 439

Query: 435 PNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSI 494
             P+AH++F+SGCQAIMYVLCFRMRSIL++PR +SQ  L P+  +L H+L+PL VCLPS+
Sbjct: 440 TRPEAHQIFFSGCQAIMYVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLMVCLPSV 499

Query: 495 VEEFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPFDPCLLKTCD----- 554
           V EFLRQAK   L   S++FIF+ LLESE S+ FGG ERLD FFPFDPCLLK+ +     
Sbjct: 500 VAEFLRQAKEGGLFIVSDSFIFDDLLESELSRAFGGFERLDTFFPFDPCLLKSSNSFISP 559

Query: 555 --------RPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMGRSYDDRDFDLDTFD 597
                   + TYD+++       D++ AEV  +            G    D D + D  D
Sbjct: 560 NFIYWSMVKATYDEDD-------DDNDAEVIVN------------GDEDSDEDDEAD-LD 613

[Close]

BLAST of HG10000838 vs. TAIR 10
Match: AT1G30590.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 413.3 bits (1061), Expect = 3.3e-115
Identity = 267/632 (42.25%), Postives = 361/632 (57.12%), Query Frame = 0


Query: 15  MEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTADEVALLVTCLKALSG 74
           M+    TD  LV   R  L+SV  G+ D Y+QL  V+   +    D VA L T LK+LS 
Sbjct: 16  MDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADFDAVAQLETVLKSLSV 75

Query: 75  AVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLWDYGPNVMDTLIELI 134
           +V+ ID++ H+ LL A+SL  +S                        + P+VMD L++LI
Sbjct: 76  SVAWIDLVHHKDLLEAMSLWYHS------------------------HRPSVMDALVDLI 135

Query: 135 ISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDISDLVP 194
           ISLA +SG Y+D CL+MLV NF  P ++K  + +   + +  EV  RVH AL  IS L+P
Sbjct: 136 ISLAATSGKYLDPCLNMLVRNFSQP-TFKHKVSQTQLVKKMQEVHPRVHAALHKISYLIP 195

Query: 195 LAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDV 254
           LAP  L  I+   M+++  K+     YV+N+LRLE  ++ E VG  IL  +++++LDLD+
Sbjct: 196 LAPWNLVSILAQNMRKIDKKDPSIVTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDL 255

Query: 255 EIGWDDILQEDFSKGIFEMELEDDDETTDDINED-------------------------- 314
             G D     D + G+F+MELED  E+T +  ++                          
Sbjct: 256 VSGCD-----DSNGGMFDMELEDAVESTMNEGDEFPVGALKQNTSGGNVVSELLDKLMVL 315

Query: 315 -------------SSEVFDILLLSFQRTVLTAYKSKFAQFVIFYACASDPEVCGVRFAVW 374
                          EVF+IL  SF+  +L  YK+KF+QF++FYAC+ DPE CGVRFA  
Sbjct: 316 FFHHLESCQNSDRLDEVFEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFASK 375

Query: 375 LADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTQDVDPN 434
           L D+++S N   LTRMSAV+YLASYLSRGKFL  S V ++LKRLVD C EY  T + D  
Sbjct: 376 LLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCGTCNDDVK 435

Query: 435 PKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVE 494
           P+AH+VFYSGCQAI+YVLCFRMRSI+EIPR +SQ     +  +L+H+L+PL VCLPS+V 
Sbjct: 436 PEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQ--FRSLESILSHKLNPLLVCLPSVVS 495

Query: 495 EFLRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPFDPCLLKTCD------- 554
           EFL+QAK   L   SE+FIF+ L ESE S+ FGG ERLD FFPFDPCLLK          
Sbjct: 496 EFLKQAKAGGLFIVSESFIFDDLHESELSRAFGGFERLDTFFPFDPCLLKMSSSYISPNF 555

Query: 555 ------RPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMGRSYDDRDFDLDTFDSA 594
                 + TY ++ +E+    DE I     D  E+   DVE                DS 
Sbjct: 556 NFWSMVKTTYGEDGDEE--LCDEVIVNGDADSAEEPDDDVE---------------LDSE 598

[Close]

BLAST of HG10000838 vs. TAIR 10
Match: AT2G39240.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 357.5 bits (916), Expect = 2.2e-98
Identity = 251/633 (39.65%), Postives = 348/633 (54.98%), Query Frame = 0


Query: 14  DMEGVNLTDAQLVDFFRGFLSSVSLGNNDGYNQLVGVIHRRDRLTADE------------ 73
           ++E  +L+D  LV   R  L+S   G+ D YN+LV +++ + + + D+            
Sbjct: 5   EVETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAMAQPEVPDDVD 64

Query: 74  -VALLVTCLKALSGAVSCIDIILHESLLAAVSLSLNSESLSCNFVVVMEVLSQIFKMSLW 133
            VA   T LK LS +V+C+D + H  L                       L  I    +W
Sbjct: 65  VVAQRETLLKILSHSVACLDDVHHNHL-----------------------LQLILGTRIW 124

Query: 134 DYGPNVMDTLIELIISLAVSSGTYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKD-EVL 193
           D+ PNV+  L++LIISLA +SG ++ SCLD LV+N            +P  L  K  EVL
Sbjct: 125 DHKPNVIYALLDLIISLATTSGKHLSSCLDTLVSNLR---------SQPRKLDNKMLEVL 184

Query: 194 SRVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTI--YVENMLRLEKGA-MSEF 253
           SRVH AL  IS LVPLAP  L  I+   M  V  K  L  +  YV+N+L+LE  + + + 
Sbjct: 185 SRVHAALHKISYLVPLAPSILLPILAQSMPSVHDKARLQVVVPYVKNLLKLENSSIIGKV 244

Query: 254 VGRKILTALVDKLLDLDVEIGWDDILQEDFSKGIFEMELEDDDETT------DDINEDS- 313
           VG+ IL  ++ +  DLD EI  DD LQ D S  +F+MEL+   E T      DD+  +S 
Sbjct: 245 VGKDILMMVMGRFRDLDSEIECDDNLQNDSSLAMFDMELDVAVEGTLVSKLLDDLMVESF 304

Query: 314 ------------SEVFDILLLSFQRTVLTAYKSKFAQFVIFYACASDPEVCGVRFAVWLA 373
                        EVF+ L  SF+  +L   K KF+QF++FYAC+ DPE CGV+FA  L 
Sbjct: 305 NHLKSCQDAGRLDEVFENLFESFENLILNTQKLKFSQFLMFYACSLDPENCGVKFASKLL 364

Query: 374 DMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTQDVDPNPK 433
           + F+S N+  +TR +AV+YLASYL+R  FLS S V ++LKRLVD C +Y +T + D  P+
Sbjct: 365 EKFLSSNNNQVTRTNAVTYLASYLARANFLSASFVASMLKRLVDECADYCRTCNDDARPE 424

Query: 434 AHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEF 493
            H+VFYSGCQAI+YVLCFRMRSILE+P  +SQ  L P+  VL+H+L PL+VCL S+V EF
Sbjct: 425 VHQVFYSGCQAILYVLCFRMRSILEVPHFQSQ--LTPLESVLSHKLDPLRVCLSSVVSEF 484

Query: 494 LRQAKVANLLSPSETFIFNGLLESEYSKTFGGIERLDMFFPF-----------DPCLLKT 553
           L QAK   L   S+ FIF+ L ESE S+  GG      FFPF            P  +K 
Sbjct: 485 LIQAKACGLFIVSDAFIFDDLSESELSRALGG------FFPFPWLLEKSNSLISPHFIKR 544

Query: 554 CD-RPTYDDEEEEDGGSSDEDIAEVFPDRIEKNLMDVEEMGRSYDDRDFDLDTFDSALNR 597
            + + TY+  E    G +D +                       +D D D+D  D+ +N+
Sbjct: 545 SEVKKTYEQAEVTVYGDTDNE-----------------------EDSDDDVDP-DNEMNK 573

The following BLAST results are available for this feature:

BLAST of HG10000838 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048966.1	2.8e-289	82.21	RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var...	[more]
XP_038896673.1	8.3e-286	81.20	RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa h...	[more]
XP_038901148.1	1.2e-284	81.08	RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa h...	[more]
KAG7011106.1	1.1e-277	78.77	RNA polymerase I-specific transcription initiation factor RRN3, partial [Cucurbi...	[more]
KAG7035298.1	1.1e-277	78.87	RNA polymerase I-specific transcription initiation factor RRN3, partial [Cucurbi...	[more]

BLAST of HG10000838 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B2RS91	2.0e-24	24.57	RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus O...	[more]
Q5R4N9	2.7e-21	25.68	RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii O...	[more]
Q9NYV6	1.0e-20	24.81	RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens O...	[more]
Q10110	2.1e-18	24.44	RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharo...	[more]
Q2M238	4.8e-10	33.86	Putative RRN3-like protein RRN3P1 OS=Homo sapiens OX=9606 GN=RRN3P1 PE=5 SV=1	[more]

BLAST of HG10000838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3Y2	1.3e-289	82.21	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo v...	[more]
A0A6J1F0A3	5.4e-275	78.46	RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 O...	[more]
A0A1S3AV30	2.1e-274	78.83	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo O...	[more]
A0A5D3D051	2.1e-274	78.83	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo v...	[more]
A0A6J1IFT9	1.8e-273	78.31	RNA polymerase I-specific transcription initiation factor RRN3-like OS=Cucurbita...	[more]

BLAST of HG10000838 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34750.1	4.1e-134	44.91	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]
AT1G30590.1	3.3e-115	42.25	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]
AT2G39240.1	2.2e-98	39.65	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PFAM	PF05327	RRN3	coord: 282..509 e-value: 9.2E-66 score: 222.5 coord: 20..287 e-value: 4.5E-32 score: 111.3
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PANTHER	PTHR12790	TRANSCRIPTION INITIATION FACTOR IA RRN3	coord: 287..586 coord: 17..288
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 71..560

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000838.1	HG10000838.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006361	transcription initiation from RNA polymerase I promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001042	RNA polymerase I core binding
molecular_function	GO:0001181	RNA polymerase I general transcription initiation factor activity
molecular_function	GO:0003743	translation initiation factor activity