HG10000466 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000466
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein RER1
Location	Chr09: 5495213 .. 5497262 (-)
RNA-Seq Expression	HG10000466
Synteny	HG10000466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGGATAGGAGGTGAAGCTGCCTCAGCGGCGGCACCGTTGAGCCAGTGGCAACATGATATTTCAAGGCTTTATCAATATTATCTCGATAAGACTACTCCACATGCTGTCTACAGATGGATTGGAACCCTTTTTCTAGTGGCAATTTATGCTTTGAGGGTCTTCTATGTGCAAGGGTTCTACATTGTTTCTTATGGTCTGGGTATCTATATACTCAATTTGTTGATTGGATTTTTGTCGCCCTTGGCTGACCCAGAGATGGAAGTTTCAGATGGGCCTTTGCTGCCTACTAAAGGTTCAGATGAATTCAAGCCATTCATTCGCCGCCTTCCAGAATTTAAGTTCTGGTAACTATGGAATTTCATTCATGAGCTTTTGAATCGTTTGCCTGTTTGTATTTGGCTGGTAAACTTTGAAGTTTTCCTTTTCTGTTGTTTCATCCTTACAAATCTGATTCTCAGTATTCTGTTTGTCTATTATGTCCAAGTCAAACTTGTCTAAACTGGGTGGCTTGGAGGGGAAAAATAATAGGCAGTGGTGAGGGAGGAAACTTACAGTGAGGTGTGCATAATTCGGTTATGTTGGCAAAAACCTGTGTGCATCAAGTAATCTTGTTGTGTTTTCTCTGTCCAACGTGACCACTACTCTTTGGTGCTTGTTGATGGGCTTTGCTCATTATGCATACAGCAATGATGAGATCCTGAATCAACATGGTCATCCCTATTTTCTTGCACCTGCCCCCAGTTGCTTACTTAGTTGTTGACATCTCAAGAATTAGGATGTAATTCGTTATGGAACAGGAAGAGGCATTTTCCTGTGGCTCGGTAATTTAAACAAGACAAGGAAAGATACAATTACTGTTTGGAAGAAGACTATATATTATCGGTTCTCACTGAAACTTGGATGGTTTTAGAGGAACCTGGTCTCTAGCCTTAACAGTATTTACATACACTATACCCTCTATATTTTATTCTTTTAAATGTATGCTAATACTTTCTTTCTACCTTTTATCCGTTTTAGTTTCGATTCATTTCTTCCTCTTTCTATGTTTTTTCTTTGCTGGAGAAAGTTCCTTGACATTATAGATTGTCACTTGGTATGACAATGGCTCTAAAATATTAACCTCTTTGTTGGGCAAACAATCTCAAATATTGTCTGGAGGCTCAATGAAGTCGACATGCTTACAAGATAATAGGTACTCCATTTTGCACCTTAAGGAAAAGGCCTTAATAAGCTTCTTCTAGTTTATACCAATTAACAGAAAGACTTCCCTTGATCCCTTGAACTATCTCCCTTTCATATATTAATATTTTTTTGGAAGAGTTCTGCCATCCCCTTCAGATCATGCAAGGGTGTGAAACGTGGGTAACCGACTTCTCTAGTTTCTTATTTGTGGGATTTTACTAGACTTTAGAAATACTATTTGCCTCATGATTGATTAATGGATTCTGTTACAGCACAGTTTTACTTGTGTGTTTATGGTAGTTCTTTTCTGTTAATTGAATTTGAATCTTCAATTGATTACTATTTGCACTCTTTAGTGTCGAACTTCTTGTCCGACCCCATAAGACCTTTCCTTTTTGGAAGTTATCAAGTTTTTGTTTGTTTCTCATATAAATGAAAATTTGTGTCTGTAGGTACTCTTTTACAAAGGCCTTTTGCATTGCCTTTGCTATGACCTTCTTTTCCATATTTGATGTCCCTGTCTTCTGGCCTATTTTACTTTGTTACTGGATTGTCCTTTTTGTCCTGACAATGAGGCGTCAGATTTCACATATGATCAAGTACAAGTACATGCCATTTAGTTTCGGAAAGCAGGTGACTTATCAAATACTTCTTATGCATTACGCTGCTGTTTCTTTATGCCCCGTTTACCTTGCCTTCTAATGTGACTATTTACAAATGTAGTTAAGAGTTGTTAGACTTGCTTTTGATAAGTCTTTCCTGTTGAGGAAACAATTGTTTTTAGTAAAAAAAAATTTATATTTTGCAGAAGTATGGTGGCAAGAAACCTTCTGCAAGTAGCGGTATTTCCAACGACGATTGA

mRNA sequence

ATGGACGGGATAGGAGGTGAAGCTGCCTCAGCGGCGGCACCGTTGAGCCAGTGGCAACATGATATTTCAAGGCTTTATCAATATTATCTCGATAAGACTACTCCACATGCTGTCTACAGATGGATTGGAACCCTTTTTCTAGTGGCAATTTATGCTTTGAGGGTCTTCTATGTGCAAGGGTTCTACATTGTTTCTTATGGTCTGGGTATCTATATACTCAATTTGTTGATTGGATTTTTGTCGCCCTTGGCTGACCCAGAGATGGAAGTTTCAGATGGGCCTTTGCTGCCTACTAAAGGTTCAGATGAATTCAAGCCATTCATTCGCCGCCTTCCAGAATTTAAGTTCTGGTACTCTTTTACAAAGGCCTTTTGCATTGCCTTTGCTATGACCTTCTTTTCCATATTTGATGTCCCTGTCTTCTGGCCTATTTTACTTTGTTACTGGATTGTCCTTTTTGTCCTGACAATGAGGCGTCAGATTTCACATATGATCAAGTACAAGTACATGCCATTTAGTTTCGGAAAGCAGAAGTATGGTGGCAAGAAACCTTCTGCAAGTAGCGGTATTTCCAACGACGATTGA

Coding sequence (CDS)

ATGGACGGGATAGGAGGTGAAGCTGCCTCAGCGGCGGCACCGTTGAGCCAGTGGCAACATGATATTTCAAGGCTTTATCAATATTATCTCGATAAGACTACTCCACATGCTGTCTACAGATGGATTGGAACCCTTTTTCTAGTGGCAATTTATGCTTTGAGGGTCTTCTATGTGCAAGGGTTCTACATTGTTTCTTATGGTCTGGGTATCTATATACTCAATTTGTTGATTGGATTTTTGTCGCCCTTGGCTGACCCAGAGATGGAAGTTTCAGATGGGCCTTTGCTGCCTACTAAAGGTTCAGATGAATTCAAGCCATTCATTCGCCGCCTTCCAGAATTTAAGTTCTGGTACTCTTTTACAAAGGCCTTTTGCATTGCCTTTGCTATGACCTTCTTTTCCATATTTGATGTCCCTGTCTTCTGGCCTATTTTACTTTGTTACTGGATTGTCCTTTTTGTCCTGACAATGAGGCGTCAGATTTCACATATGATCAAGTACAAGTACATGCCATTTAGTTTCGGAAAGCAGAAGTATGGTGGCAAGAAACCTTCTGCAAGTAGCGGTATTTCCAACGACGATTGA

Protein sequence

MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQGFYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYGGKKPSASSGISNDD

Homology

[Close]

BLAST of HG10000466 vs. NCBI nr
Match: XP_038900392.1 (protein RER1A-like [Benincasa hispida] >XP_038900393.1 protein RER1A-like [Benincasa hispida])

HSP 1 Score: 381.3 bits (978), Expect = 4.9e-102
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPH VYRWIGT+F+VAIYALRVFYVQG
Sbjct: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHTVYRWIGTIFVVAIYALRVFYVQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPF+RRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFVRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKY+PFSFGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSFGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKKPSASSGISNDD
Sbjct: 181 GKKPSASSGISNDD 194

[Close]

BLAST of HG10000466 vs. NCBI nr
Match: XP_022943556.1 (protein RER1A-like [Cucurbita moschata] >KAG7010926.1 Protein RER1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.4 bits (960), Expect = 5.9e-100
Identity = 184/194 (94.85%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGGE ASAAAPLSQWQHD+SRLYQYYLDKTTPHAVYRWIGTLF++AIYALRVFYVQG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDVSRLYQYYLDKTTPHAVYRWIGTLFVLAIYALRVFYVQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQI+HMIKYKY+PFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSLGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKK SASSGISNDD
Sbjct: 181 GKKASASSGISNDD 194

[Close]

BLAST of HG10000466 vs. NCBI nr
Match: XP_022947776.1 (protein RER1A-like [Cucurbita moschata])

HSP 1 Score: 374.0 bits (959), Expect = 7.8e-100
Identity = 184/194 (94.85%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGGE ASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLF+VAIYALRVFY+QG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIYALRVFYIQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKY+PFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKKPSA S ISN+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of HG10000466 vs. NCBI nr
Match: XP_023533159.1 (protein RER1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.9 bits (956), Expect = 1.7e-99
Identity = 183/194 (94.33%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGGE ASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLF+VAIYALRV+Y+QG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIYALRVYYIQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKY+PFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKKPSA S ISN+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of HG10000466 vs. NCBI nr
Match: XP_022146273.1 (protein RER1A-like [Momordica charantia])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 182/194 (93.81%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGG+ ASAAAPL+QWQHDISRLYQYYLDKTTPHAVYRWIGT+F++AIYALRV+YVQG
Sbjct: 1   MDGIGGDTASAAAPLNQWQHDISRLYQYYLDKTTPHAVYRWIGTIFVLAIYALRVYYVQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKY+PFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKK SASSGISNDD
Sbjct: 181 GKKASASSGISNDD 194

[Close]

BLAST of HG10000466 vs. ExPASy Swiss-Prot
Match: O48670 (Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.9e-80
Identity = 146/188 (77.66%), Postives = 163/188 (86.70%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MD  GG++ S A P+ Q  H+  R+YQ+YLDKTTPHA YRWIGTL +  IY LRV+Y+QG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEM-EVSDGPLLPTKGSDEFKPFIRRLPEFKFWYS 120
           FYI++YGLGIY+LNLLIGFLSPL DPE   VSDGP LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 121 FTKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKY 180
            TKAFCIAF MTFFS+FDVPVFWPILLCYWIVLFVLTMRRQI+HMIKYKY+PFSFGKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 181 GGKKPSAS 188
           GG+  S S
Sbjct: 181 GGRSSSGS 188

[Close]

BLAST of HG10000466 vs. ExPASy Swiss-Prot
Match: O48671 (Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-79
Identity = 142/189 (75.13%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           M+G GG++ S A P+ +  H+  R+YQYYLDKTTPH+  RWIGTL    IY LRV+ + G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIY+LNLLIGFLSPL DPE+EVSDG  LPT+GSDEFKPFIRRLPEFKFWYS 
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFS+FDVPVFWPILLCYW+VLFVLTMRRQI+HMIK+KY+PFS GKQKY 
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 181 GKKPSASSG 190
           G+K SA+SG
Sbjct: 181 GRKSSANSG 189

[Close]

BLAST of HG10000466 vs. ExPASy Swiss-Prot
Match: Q9ZWI7 (Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.8e-57
Identity = 106/179 (59.22%), Postives = 141/179 (78.77%), Query Frame = 0


Query: 7   EAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQGFYIVSY 66
           +++S A  +++  H  S+  Q+ LDKT PH +YRWI  L +V IY +RV++V+GFYI++Y
Sbjct: 29  DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITY 88

Query: 67  GLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCI 126
            +GIY+LNL+I FLSP  DPE  ++ G  LPT+ SDE++PF+RRLPEFKFW S  +AF I
Sbjct: 89  AIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFII 148

Query: 127 AFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYGGKKPS 186
            F MTFF +FDVPVFWPILL YW++LF LTMR+QI HMIKY+Y+PFSFGK++Y GKKP+
Sbjct: 149 GFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPA 206

[Close]

BLAST of HG10000466 vs. ExPASy Swiss-Prot
Match: Q9ZPV7 (Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=At2g18240 PE=2 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 9.7e-53
Identity = 99/165 (60.00%), Postives = 124/165 (75.15%), Query Frame = 0


Query: 12  AAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQGFYIVSYGLGIY 71
           A+PL++W+ + S+ +Q YLD++ P+ V RW+ TL    IY  RV+ V G++++SYGL  Y
Sbjct: 16  ASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATY 75

Query: 72  ILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFAMT 131
           ILNLLIGFLSP  DPE+E  D   LP   SDE+KPF+RRLPEFKFWY+ TKAF +AF MT
Sbjct: 76  ILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMT 135

Query: 132 FFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGK 177
           FFS  DVPVFWPILLCYW+VL+ LTM+R I HM KY+Y PF   K
Sbjct: 136 FFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

[Close]

BLAST of HG10000466 vs. ExPASy Swiss-Prot
Match: Q5ZHM5 (Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.2e-49
Identity = 100/184 (54.35%), Postives = 134/184 (72.83%), Query Frame = 0


Query: 2   DGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQGF 61
           D IG       + + ++   + ++YQ +LDK+TP+   RWI TL L  IY +RV+ +QG+
Sbjct: 5   DSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGW 64

Query: 62  YIVSYGLGIYILNLLIGFLSPLADPEM--EVSDGPLLPTKGSDEFKPFIRRLPEFKFWYS 121
           YIV+Y LGIY LNL I FLSP  DP +  +  DGP LPT+ ++EF+PFIRRLPEFKFW+S
Sbjct: 65  YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHS 124

Query: 122 FTKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKY 181
            TK   +A A TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKY+Y+PF+ GK+KY
Sbjct: 125 ATKGILVAMACTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRKY 184

Query: 182 GGKK 184
            GK+
Sbjct: 185 KGKE 188

[Close]

BLAST of HG10000466 vs. ExPASy TrEMBL
Match: A0A6J1FS15 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111448292 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.9e-100
Identity = 184/194 (94.85%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGGE ASAAAPLSQWQHD+SRLYQYYLDKTTPHAVYRWIGTLF++AIYALRVFYVQG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDVSRLYQYYLDKTTPHAVYRWIGTLFVLAIYALRVFYVQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQI+HMIKYKY+PFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSLGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKK SASSGISNDD
Sbjct: 181 GKKASASSGISNDD 194

[Close]

BLAST of HG10000466 vs. ExPASy TrEMBL
Match: A0A6J1G7E1 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111451535 PE=3 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 3.8e-100
Identity = 184/194 (94.85%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGGE ASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLF+VAIYALRVFY+QG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIYALRVFYIQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKY+PFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKKPSA S ISN+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of HG10000466 vs. ExPASy TrEMBL
Match: A0A6J1CY56 (Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111015523 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 182/194 (93.81%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGG+ ASAAAPL+QWQHDISRLYQYYLDKTTPHAVYRWIGT+F++AIYALRV+YVQG
Sbjct: 1   MDGIGGDTASAAAPLNQWQHDISRLYQYYLDKTTPHAVYRWIGTIFVLAIYALRVYYVQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKY+PFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKK SASSGISNDD
Sbjct: 181 GKKASASSGISNDD 194

[Close]

BLAST of HG10000466 vs. ExPASy TrEMBL
Match: A0A6J1L096 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111499866 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.4e-99
Identity = 182/194 (93.81%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGGE ASAAAPLSQWQHDISRLYQYYLDKTTPH VYRWIGTLF+VAIYALRV+Y+QG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHTVYRWIGTLFVVAIYALRVYYIQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKY+PFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GKKPSASSGISNDD 195
           GKKPSA S ISN+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of HG10000466 vs. ExPASy TrEMBL
Match: A0A0A0LP91 (Protein RER1 OS=Cucumis sativus OX=3659 GN=Csa_2G248640 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.2e-99
Identity = 181/194 (93.30%), Postives = 189/194 (97.42%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MDGIGGEAASAA PLSQWQHD+SRLYQYYLDK TPHAVYRWIGTLF+VAIYALRVFYVQG
Sbjct: 1   MDGIGGEAASAAGPLSQWQHDVSRLYQYYLDKITPHAVYRWIGTLFIVAIYALRVFYVQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIVSYGLGIYILNLLIGFLSPL DPEMEVSDGPLLPTKGSDEF+PFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFRPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKY+PFSFGKQK+G
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYLPFSFGKQKHG 180

Query: 181 GKKPSASSGISNDD 195
           GKKPSASS +++DD
Sbjct: 181 GKKPSASSVVTSDD 194

[Close]

BLAST of HG10000466 vs. TAIR 10
Match: AT4G39220.1 (Rer1 family protein )

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-81
Identity = 146/188 (77.66%), Postives = 163/188 (86.70%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           MD  GG++ S A P+ Q  H+  R+YQ+YLDKTTPHA YRWIGTL +  IY LRV+Y+QG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEM-EVSDGPLLPTKGSDEFKPFIRRLPEFKFWYS 120
           FYI++YGLGIY+LNLLIGFLSPL DPE   VSDGP LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 121 FTKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKY 180
            TKAFCIAF MTFFS+FDVPVFWPILLCYWIVLFVLTMRRQI+HMIKYKY+PFSFGKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 181 GGKKPSAS 188
           GG+  S S
Sbjct: 181 GGRSSSGS 188

[Close]

BLAST of HG10000466 vs. TAIR 10
Match: AT2G21600.1 (endoplasmatic reticulum retrieval protein 1B )

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-80
Identity = 142/189 (75.13%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQG 60
           M+G GG++ S A P+ +  H+  R+YQYYLDKTTPH+  RWIGTL    IY LRV+ + G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 61  FYIVSYGLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIY+LNLLIGFLSPL DPE+EVSDG  LPT+GSDEFKPFIRRLPEFKFWYS 
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCIAFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYG 180
           TKAFCIAF MTFFS+FDVPVFWPILLCYW+VLFVLTMRRQI+HMIK+KY+PFS GKQKY 
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 181 GKKPSASSG 190
           G+K SA+SG
Sbjct: 181 GRKSSANSG 189

[Close]

BLAST of HG10000466 vs. TAIR 10
Match: AT2G23310.1 (Rer1 family protein )

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-58
Identity = 106/179 (59.22%), Postives = 141/179 (78.77%), Query Frame = 0


Query: 7   EAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQGFYIVSY 66
           +++S A  +++  H  S+  Q+ LDKT PH +YRWI  L +V IY +RV++V+GFYI++Y
Sbjct: 29  DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITY 88

Query: 67  GLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCI 126
            +GIY+LNL+I FLSP  DPE  ++ G  LPT+ SDE++PF+RRLPEFKFW S  +AF I
Sbjct: 89  AIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFII 148

Query: 127 AFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYGGKKPS 186
            F MTFF +FDVPVFWPILL YW++LF LTMR+QI HMIKY+Y+PFSFGK++Y GKKP+
Sbjct: 149 GFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQY-GKKPA 206

[Close]

BLAST of HG10000466 vs. TAIR 10
Match: AT2G23310.2 (Rer1 family protein )

HSP 1 Score: 219.5 bits (558), Expect = 2.3e-57
Identity = 107/179 (59.78%), Postives = 140/179 (78.21%), Query Frame = 0


Query: 7   EAASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQGFYIVSY 66
           +++S A  +++  H  S+  Q+ LDKT PH +YRWI  L +V IY +RV++V+GFYI++Y
Sbjct: 29  DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITY 88

Query: 67  GLGIYILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCI 126
            +GIY+LNL+I FLSP  DPE  ++ G  LPT+ SDE++PF+RRLPEFKFW S  +AF I
Sbjct: 89  AIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFII 148

Query: 127 AFAMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGKQKYGGKKPS 186
            F MTFF +FDVPVFWPILL YW++LF LTMR+QI HMIKY+Y+PFSFGK KY GKKP+
Sbjct: 149 GFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGK-KY-GKKPA 205

[Close]

BLAST of HG10000466 vs. TAIR 10
Match: AT2G18240.1 (Rer1 family protein )

HSP 1 Score: 208.0 bits (528), Expect = 6.9e-54
Identity = 99/165 (60.00%), Postives = 124/165 (75.15%), Query Frame = 0


Query: 12  AAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFLVAIYALRVFYVQGFYIVSYGLGIY 71
           A+PL++W+ + S+ +Q YLD++ P+ V RW+ TL    IY  RV+ V G++++SYGL  Y
Sbjct: 16  ASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATY 75

Query: 72  ILNLLIGFLSPLADPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFAMT 131
           ILNLLIGFLSP  DPE+E  D   LP   SDE+KPF+RRLPEFKFWY+ TKAF +AF MT
Sbjct: 76  ILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMT 135

Query: 132 FFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYMPFSFGK 177
           FFS  DVPVFWPILLCYW+VL+ LTM+R I HM KY+Y PF   K
Sbjct: 136 FFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

The following BLAST results are available for this feature:

BLAST of HG10000466 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900392.1	4.9e-102	96.39	protein RER1A-like [Benincasa hispida] >XP_038900393.1 protein RER1A-like [Benin...	[more]
XP_022943556.1	5.9e-100	94.85	protein RER1A-like [Cucurbita moschata] >KAG7010926.1 Protein RER1B, partial [Cu...	[more]
XP_022947776.1	7.8e-100	94.85	protein RER1A-like [Cucurbita moschata]	[more]
XP_023533159.1	1.7e-99	94.33	protein RER1A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022146273.1	3.9e-99	93.81	protein RER1A-like [Momordica charantia]	[more]

BLAST of HG10000466 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48670	1.9e-80	77.66	Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1	[more]
O48671	2.1e-79	75.13	Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2	[more]
Q9ZWI7	3.8e-57	59.22	Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1	[more]
Q9ZPV7	9.7e-53	60.00	Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=At2g18240 PE=2 SV=2	[more]
Q5ZHM5	2.2e-49	54.35	Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1	[more]

BLAST of HG10000466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FS15	2.9e-100	94.85	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111448292 PE=3 SV=1	[more]
A0A6J1G7E1	3.8e-100	94.85	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111451535 PE=3 SV=1	[more]
A0A6J1CY56	1.9e-99	93.81	Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111015523 PE=3 SV=1	[more]
A0A6J1L096	2.4e-99	93.81	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111499866 PE=3 SV=1	[more]
A0A0A0LP91	4.2e-99	93.30	Protein RER1 OS=Cucumis sativus OX=3659 GN=Csa_2G248640 PE=3 SV=1	[more]

BLAST of HG10000466 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39220.1	1.3e-81	77.66	Rer1 family protein	[more]
AT2G21600.1	1.5e-80	75.13	endoplasmatic reticulum retrieval protein 1B	[more]
AT2G23310.1	2.7e-58	59.22	Rer1 family protein	[more]
AT2G23310.2	2.3e-57	59.78	Rer1 family protein	[more]
AT2G18240.1	6.9e-54	60.00	Rer1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004932	Retrieval of early ER protein Rer1	PIRSF	PIRSF016013	AtER_Rer1p	coord: 1..190 e-value: 2.0E-86 score: 286.5
IPR004932	Retrieval of early ER protein Rer1	PFAM	PF03248	Rer1	coord: 18..180 e-value: 1.4E-74 score: 249.5
IPR004932	Retrieval of early ER protein Rer1	PANTHER	PTHR10743	PROTEIN RER1	coord: 1..190
None	No IPR available	PANTHER	PTHR10743:SF17	PROTEIN RER1A	coord: 1..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000466.1	HG10000466.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006621	protein retention in ER lumen
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0030173	integral component of Golgi membrane
cellular_component	GO:0016021	integral component of membrane