HG10000453 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000453
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	glycine-rich RNA-binding protein-like
Location	Chr09: 5355905 .. 5356699 (+)
RNA-Seq Expression	HG10000453
Synteny	HG10000453

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCGCTCAATTTGGTGATATCGTTGAAGCCAAGGTCCGTTTGTCGTCGAGATCTGGATTTGTTCCGAATCGGCTTTCTCCATCCTTAATCTGATCTGTGACTCTGTGACTCTCATCTGTGTTTTGTGTTACTTTACTACTACTACTCTCTTGCTATCTGTTACTTTTATTACTCTCCTTTGATCGGTACGTTCACCTTCATCTTTTTTACAGAGACGAAGAACGATCGGTTTCTTTTTTTTTGTTTGTTGTTGTGACTGTGTTAACTGATGTTGTTCTGTGGCTGATCTTGATTTTTCTTTTGTTAATTTTCCTTCAGATCGTCAACGATCGTGAAACCGGAAGGTCGAGGGGATTTGGATTCGTGACGTTTGCTGAGGAGGAGGCTATGAGGAGTGCTATTGAAGCAATGAACGGCCAGAATCTCGACGGTCGTAGTATTACCGTCAACGAGGCGCAGCAAAGAGGTGGAGGTGGCGGTGGTGGTTACAGCCGTGGTGGTGGTGGTGGAGGTGGATACGGTGGACGACGTGAAGGAGGAGGTGGTGGTGGATACAGCCGTGGAGGCGGTGGTTACGGAGGAGGTGGAGGTGGATACGGAGGAGGTGGTTATGGTGGTGGACGTGACCGTGGCTACGGCGGTGGTGGTGATGGTGGTTCCCGTTACTCCAGGGGAGGCGGCGGCGGTGGATCTGAAGGAGGATGGAGAAATTAG

mRNA sequence

ATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCGCTCAATTTGGTGATATCGTTGAAGCCAAGATCGTCAACGATCGTGAAACCGGAAGGTCGAGGGGATTTGGATTCGTGACGTTTGCTGAGGAGGAGGCTATGAGGAGTGCTATTGAAGCAATGAACGGCCAGAATCTCGACGGTCGTAGTATTACCGTCAACGAGGCGCAGCAAAGAGGTGGAGGTGGCGGTGGTGGTTACAGCCGTGGTGGTGGTGGTGGAGGTGGATACGGTGGACGACGTGAAGGAGGAGGTGGTGGTGGATACAGCCGTGGAGGCGGTGGTTACGGAGGAGGTGGAGGTGGATACGGAGGAGGTGGTTATGGTGGTGGACGTGACCGTGGCTACGGCGGTGGTGGTGATGGTGGTTCCCGTTACTCCAGGGGAGGCGGCGGCGGTGGATCTGAAGGAGGATGGAGAAATTAG

Coding sequence (CDS)

ATGGCTTCCTCTTCTGTTGAGTACCGTTGCTTTGTGGGTGGCCTTGCTTGGGCCACTGATAGTAATGCCTTAGAGAAGGCTTTCGCTCAATTTGGTGATATCGTTGAAGCCAAGATCGTCAACGATCGTGAAACCGGAAGGTCGAGGGGATTTGGATTCGTGACGTTTGCTGAGGAGGAGGCTATGAGGAGTGCTATTGAAGCAATGAACGGCCAGAATCTCGACGGTCGTAGTATTACCGTCAACGAGGCGCAGCAAAGAGGTGGAGGTGGCGGTGGTGGTTACAGCCGTGGTGGTGGTGGTGGAGGTGGATACGGTGGACGACGTGAAGGAGGAGGTGGTGGTGGATACAGCCGTGGAGGCGGTGGTTACGGAGGAGGTGGAGGTGGATACGGAGGAGGTGGTTATGGTGGTGGACGTGACCGTGGCTACGGCGGTGGTGGTGATGGTGGTTCCCGTTACTCCAGGGGAGGCGGCGGCGGTGGATCTGAAGGAGGATGGAGAAATTAG

Protein sequence

MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGWRN

Homology

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BLAST of HG10000453 vs. NCBI nr
Match: XP_022943401.1 (glycine-rich RNA-binding protein-like [Cucurbita moschata])

HSP 1 Score: 246.5 bits (628), Expect = 1.6e-61
Identity = 158/173 (91.33%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAF+ FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSR-GGGGGGGYGGRREGGGGGGYSR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+R GGGGGGGYGGRREGGGGGGY+R
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYSR---GGGGGGSEGGWRN 170
           GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRY+R   GGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

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BLAST of HG10000453 vs. NCBI nr
Match: KAG6571119.1 (hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 242.7 bits (618), Expect = 2.4e-60
Identity = 158/172 (91.86%), Postives = 167/172 (97.09%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAF+ FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSR-GGGGGGGYGGRRE-GGGGGGYS 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+R GGGGGGGYGGRRE GGGGGGY+
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGGYN 120

Query: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYSR-GGGGGGSEGGWRN 170
           RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRY+R GGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGSEGGWRN 172

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BLAST of HG10000453 vs. NCBI nr
Match: XP_038901242.1 (glycine-rich RNA-binding protein-like [Benincasa hispida])

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-59
Identity = 158/171 (92.40%), Postives = 163/171 (95.32%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVE+RCFVGGLAWATD+ ALEKAF+ FGDIVEAKIVNDRETGRSRGFGFVTFAEEE
Sbjct: 1   MASSSVEFRCFVGGLAWATDNIALEKAFSPFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYSRGGGGGGGYGGRREGGGGGGYSR 120
           AMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGY+RGGGGGGGYGGRREGGGGGGY+R
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGY-GGGGDGGSRYSRGGGGGGSEGGWRN 170
           G GGY  GGGGYGGGGYGGGRDR Y GGGGDGGSRYSRGGGGGGSEGGWRN
Sbjct: 121 GSGGY--GGGGYGGGGYGGGRDRSYGGGGGDGGSRYSRGGGGGGSEGGWRN 169

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BLAST of HG10000453 vs. NCBI nr
Match: XP_023512522.1 (glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-59
Identity = 158/171 (92.40%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAF+ FG+IVEAKIVNDRETGRSRGFGFVTFAEEE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFAEEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRG 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+RGGGGGGGYGGRRE GGGGGY+RG
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNRG 120

Query: 121 GGGYGGGGGGYGGGGY-GGGRDRGYGGGGDGGSRYSR-GGGGGGSEGGWRN 170
           GGGYGGGGGGYGGGGY GGGRDRGY GGGDGGSRY+R GGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGYGGGGRDRGY-GGGDGGSRYNRGGGGGGGSEGGWRN 169

[Close]

BLAST of HG10000453 vs. NCBI nr
Match: XP_023533100.1 (glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533101.1 glycine-rich RNA-binding protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.1 bits (601), Expect = 2.2e-58
Identity = 155/171 (90.64%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAF+ FG+IVEAKIVNDRETGRSRGFGFVTF +EE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYSRGGGGGGGYGGRREGGGGGGYSR 120
           AMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGY+RGGGGGGGYGGRRE GGGGGY+R
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYSR-GGGGGGSEGGWRN 170
           GGGGYGGGGGGYGGGGYGGGRDRGYGGGG  G RY R GGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGGDGGRYQRGGGGGGGSEGGWRN 170

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BLAST of HG10000453 vs. ExPASy Swiss-Prot
Match: Q03878 (Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-38
Identity = 116/159 (72.96%), Postives = 129/159 (81.13%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMR 63
           + VEYRCFVGGLAWAT+  +LE+AF+QFGDI ++KI+NDRETGRSRGFGFVTF +E++MR
Sbjct: 2   AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGG----GGGGGYGGRREGGGGGGY-- 123
            AIE MNGQ LDGR+ITVNEAQ RG GGGGG   GG    GGGGGYGGRREGGGGGGY  
Sbjct: 62  DAIEGMNGQELDGRNITVNEAQSRGSGGGGGRREGGGGGYGGGGGYGGRREGGGGGGYGG 121

Query: 124 --SRGGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRY 155
               GGGGYGGGGGGYGG   GG  D GYGGGG GGSR+
Sbjct: 122 RREGGGGGYGGGGGGYGGRREGG--DGGYGGGG-GGSRW 157

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BLAST of HG10000453 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-35
Identity = 122/181 (67.40%), Postives = 134/181 (74.03%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MAS  VEYRCFVGGLAWATD  ALE AFAQ+GD++++KI+NDRETGRSRGFGFVTF +E+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGG------GGGGGY-GGRREGGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+  GG      GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYSRGGGGYGGGGGGY-----GGGGYGGGRDRGYG--GGGDGGSRYSRGGGGGGSEGG 168
           GGG   GGGGY GGGGGY     GGG YGGGR  G G  GGG+GG     G GG G  GG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGG-----GYGGSGGGGG 176

[Close]

BLAST of HG10000453 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-34
Identity = 116/176 (65.91%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MA++ VEYRCFVGGLAWAT++  LE+AFA FG ++++K++ DRETGRSRGFGFVTF+ E+
Sbjct: 1   MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRG 120
           +M  AIE MNG+ LDGR+ITVN+AQ RGGGGGGG    GGGGGGYGGR     GGGY  G
Sbjct: 61  SMLDAIENMNGKELDGRNITVNQAQSRGGGGGGG--GYGGGGGGYGGRE----GGGYGGG 120

Query: 121 GGGYGG---GGGGYGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGG----SEGGWRN 170
           GGGYGG   GGGGYGGGGYGGG   GY GG +GG  Y  GGG GG    S G WRN
Sbjct: 121 GGGYGGRREGGGGYGGGGYGGG-GGGY-GGREGGGGYGGGGGYGGNRGDSGGNWRN 168

[Close]

BLAST of HG10000453 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.0e-34
Identity = 119/175 (68.00%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MAS  VEYRCFVGGLAWATD  ALE AF+Q+G+++++KI+NDRETGRSRGFGFVTF +E+
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRG 120
           +M+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG   G GGGGGY      GGGGGY  G
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGG---GRGGGGGY----RSGGGGGYGGG 120

Query: 121 GGGYGGGG--GGYGGGGYG----GGRDRGYGGGG--DGGSRYSRGGGGGGSEGGW 168
           GGGYGGGG  GGY GGG G    GG   GYGGGG  DGG     GG GGG  GGW
Sbjct: 121 GGGYGGGGREGGYSGGGGGYSSRGGGGGGYGGGGRRDGGEGGGYGGSGGG--GGW 166

[Close]

BLAST of HG10000453 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.9e-34
Identity = 114/167 (68.26%), Postives = 131/167 (78.44%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMR 63
           + VEYRCFVGGL WATD  +L+ AF+++GD++++KI+ DRETGRSRGFGFVTFA +EAMR
Sbjct: 2   ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRGGGG 123
            AIEAMNGQ+LDGR+ITVNEAQ R   GGGG+   GGGGGGYGG+R  GGGGGY  GGGG
Sbjct: 62  QAIEAMNGQDLDGRNITVNEAQSRRSDGGGGF---GGGGGGYGGQRREGGGGGYGGGGGG 121

Query: 124 YGGGGGGYGGGGYGG--GRDRGYGGGGDGGSRYSRGGGGGGSEGGWR 169
           YGGG  G GGGGYG   G   GYGGGG GG   SRGG GGG+   WR
Sbjct: 122 YGGGRSG-GGGGYGSRDGGGGGYGGGG-GGYGGSRGGSGGGN---WR 160

[Close]

BLAST of HG10000453 vs. ExPASy TrEMBL
Match: A0A6J1FRL7 (glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448177 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.9e-62
Identity = 158/173 (91.33%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAF+ FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSR-GGGGGGGYGGRREGGGGGGYSR 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+R GGGGGGGYGGRREGGGGGGY+R
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGYGGRREGGGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYSR---GGGGGGSEGGWRN 170
           GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRY+R   GGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDGGSRYNRGGGGGGGGGSEGGWRN 173

[Close]

BLAST of HG10000453 vs. ExPASy TrEMBL
Match: A0A6J1L652 (glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499534 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.0e-58
Identity = 157/174 (90.23%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAF+ FG+IVEAKIVNDRETGRSRGFGFVTF +EE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR--GGGGGGGYSRGGGGGGGYGGRREGGGGGGYS 120
           AMRSAIEAMNGQNLDGRSITVNEAQQR  GGGGGGGY+RGGGGGGGYGGRREGGGGGGY+
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGGYNRGGGGGGGYGGRREGGGGGGYN 120

Query: 121 RGGGGYGGGGGGY-GGGGYGGGRDRGYGGGGDG-GSRYSR-GGGGGGSEGGWRN 170
           RGGGGYGGGGGGY GGGGYGGGRDRGYGGGG G G RY R GGGGGGSEGGWRN
Sbjct: 121 RGGGGYGGGGGGYGGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 174

[Close]

BLAST of HG10000453 vs. ExPASy TrEMBL
Match: A0A6J1G631 (glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451139 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.0e-58
Identity = 156/172 (90.70%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAF+ FG+IVEAKIVNDRETGRSRGFGFVTF +EE
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVDEE 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQR-GGGGGGGYSRGGGGGGGYGGRREGGGGGGYSR 120
           AMRSAIEAMNGQNLDGRSITVNEAQQR GGGGGGGY+RGGGGGGGYGGRRE GGGGGY+R
Sbjct: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGGYNRGGGGGGGYGGRRE-GGGGGYNR 120

Query: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGDG-GSRYSR-GGGGGGSEGGWRN 170
           GGGGYGGGGGGYGGGGYGGGRDRGYGGGG G G RY R GGGGGGSEGGWRN
Sbjct: 121 GGGGYGGGGGGYGGGGYGGGRDRGYGGGGGGDGGRYQRGGGGGGGSEGGWRN 171

[Close]

BLAST of HG10000453 vs. ExPASy TrEMBL
Match: A0A6J1JGK0 (glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484309 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.5e-57
Identity = 155/174 (89.08%), Postives = 164/174 (94.25%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATD++ALEKAF+ FG+IVEAKIVNDRETGRSRGFGFVTF EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDNHALEKAFSSFGEIVEAKIVNDRETGRSRGFGFVTFVEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSR---GGGGGGGYGGRREGGGGGGY 120
           +MRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGY+R   GGGGGGGYGGRRE GGGGGY
Sbjct: 61  SMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYNRGGGGGGGGGGYGGRRE-GGGGGY 120

Query: 121 SRGGGGY--GGGGGGYGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGSEGGWRN 170
           +RGGGGY  GGGGGGYGGGGYGGGRDRGY GGGDGGSRY+R GGGGGSEGGWRN
Sbjct: 121 NRGGGGYGSGGGGGGYGGGGYGGGRDRGY-GGGDGGSRYNR-GGGGGSEGGWRN 171

[Close]

BLAST of HG10000453 vs. ExPASy TrEMBL
Match: A0A1S3CE16 (glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.5e-55
Identity = 151/171 (88.30%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MASSSVEYRCFVGGLAWATDSNALEKAF+ FGDIVEAKIV+DRETGRSRGFGFVTF+EE+
Sbjct: 1   MASSSVEYRCFVGGLAWATDSNALEKAFSPFGDIVEAKIVSDRETGRSRGFGFVTFSEED 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRG 120
           AMRSAIEAMNG  LDGR+ITVNEAQQRGGGGGGG    GGGGGGYGGRR+GGGGGG+SRG
Sbjct: 61  AMRSAIEAMNGHILDGRNITVNEAQQRGGGGGGGGGYRGGGGGGYGGRRDGGGGGGFSRG 120

Query: 121 GGGYGGGGGGY-GGGGYGGGRDRGYGGGGD-GGSRYSRGGGGGGSEGGWRN 170
           GGGYGGGGGGY GGGGYGGGRDRGYGGGG  GG R +RGGGGGGSEGGWRN
Sbjct: 121 GGGYGGGGGGYGGGGGYGGGRDRGYGGGGGYGGGRDNRGGGGGGSEGGWRN 171

[Close]

BLAST of HG10000453 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-37
Identity = 120/169 (71.01%), Postives = 132/169 (78.11%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MAS  VEYRCFVGGLAWATD  ALE AFAQ+GD++++KI+NDRETGRSRGFGFVTF +E+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+ RGGG  GG GGRRE  GGGGYS G
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGH-RGGGSYGGGGGRRE--GGGGYSGG 120

Query: 121 GGGYGGGGGGYGGGGYGGGRDRGYG--GGGDGGSRYSRGGGGGGSEGGW 168
           GGGY   GG  GGG YGGGR  G G  GGG+GG     G GG G  GGW
Sbjct: 121 GGGYSSRGG--GGGSYGGGRREGGGGYGGGEGG-----GYGGSGGGGGW 159

[Close]

BLAST of HG10000453 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 122/181 (67.40%), Postives = 134/181 (74.03%), Query Frame = 0


Query: 1   MASSSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEE 60
           MAS  VEYRCFVGGLAWATD  ALE AFAQ+GD++++KI+NDRETGRSRGFGFVTF +E+
Sbjct: 1   MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  AMRSAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGG------GGGGGY-GGRREGGG 120
           AM+ AIE MNGQ+LDGRSITVNEAQ RG GGGGG+  GG      GGGGGY GG    GG
Sbjct: 61  AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG 120

Query: 121 GGGYSRGGGGYGGGGGGY-----GGGGYGGGRDRGYG--GGGDGGSRYSRGGGGGGSEGG 168
           GGG   GGGGY GGGGGY     GGG YGGGR  G G  GGG+GG     G GG G  GG
Sbjct: 121 GGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGG-----GYGGSGGGGG 176

[Close]

BLAST of HG10000453 vs. TAIR 10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-32
Identity = 114/171 (66.67%), Postives = 128/171 (74.85%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMR 63
           S VEYRCFVGGLAWAT+   L++ F+QFGD++++KI+NDRE+GRSRGFGFVTF +E+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRG--------GGGGGGYSRGGGGG--GGYGGRREGGG 123
            AIE MNG+ LDGR ITVNEAQ RG        GG GGGY  GGGGG  GG GG   GGG
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGG 121

Query: 124 GGGYSRGGGGYGGGGGGYGGGGYGGG--RDRGYGGGGDGGSRYSRGGGGGG 163
           GGGY R  GGYG GGGG GG GYGGG  R+ G  GGGDGG   S GGGGGG
Sbjct: 122 GGGYERRSGGYGSGGGG-GGRGYGGGGRREGGGYGGGDGG---SYGGGGGG 168

[Close]

BLAST of HG10000453 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-31
Identity = 91/136 (66.91%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 4   SSVEYRCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMR 63
           S VEYRCFVGGLAWAT+   L++ F+QFGD++++KI+NDRE+GRSRGFGFVTF +E+AMR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 64  SAIEAMNGQNLDGRSITVNEAQQRGGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRGGGG 123
            AIE MNG+ LDGR ITVNEAQ RG GG      GGGG GG GG    GGGGGYS     
Sbjct: 62  DAIEEMNGKELDGRVITVNEAQSRGSGG------GGGGRGGSGGGYRSGGGGGYS----- 121

Query: 124 YGGGGGGYGGGGYGGG 140
            GGGGGGY GGG GGG
Sbjct: 122 -GGGGGGYSGGGGGGG 125

[Close]

BLAST of HG10000453 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 93/170 (54.71%), Postives = 116/170 (68.24%), Query Frame = 0


Query: 9   RCFVGGLAWATDSNALEKAFAQFGDIVEAKIVNDRETGRSRGFGFVTFAEEEAMRSAIEA 68
           + F+GG+A++ D ++L +AF ++G++V+ +++ DRETGRSRGFGFVTF   EA  SAI+A
Sbjct: 41  KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100

Query: 69  MNGQNLDGRSITVNEAQQR---GGGGGGGYSRGGGGGGGYGGRREGGGGGGYSRGGGGYG 128
           ++G++L GR + VN A  R   GG GGGGY  GGGG GG GG   GGG GGY  G GGYG
Sbjct: 101 LDGRDLHGRVVKVNYANDRTSGGGFGGGGYGGGGGGYGGSGG--YGGGAGGYG-GSGGYG 160

Query: 129 GGGGGYG---GGGYGGGRDRGYGG---GGDGGSRYSRGGGGG--GSEGGW 168
           GG GGYG   GGGYGG    GYGG   GG GG     GG GG  GS GG+
Sbjct: 161 GGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGF 207

The following BLAST results are available for this feature:

BLAST of HG10000453 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943401.1	1.6e-61	91.33	glycine-rich RNA-binding protein-like [Cucurbita moschata]	[more]
KAG6571119.1	2.4e-60	91.86	hypothetical protein SDJN03_30034, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038901242.1	1.5e-59	92.40	glycine-rich RNA-binding protein-like [Benincasa hispida]	[more]
XP_023512522.1	1.5e-59	92.40	glycine-rich RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023533100.1	2.2e-58	90.64	glycine-rich RNA-binding protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]

BLAST of HG10000453 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03878	2.6e-38	72.96	Glycine-rich RNA-binding protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
Q03250	1.6e-35	67.40	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]
Q99070	1.0e-34	65.91	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
P49310	3.0e-34	68.00	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q43472	3.9e-34	68.26	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]

BLAST of HG10000453 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRL7	7.9e-62	91.33	glycine-rich RNA-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1L652	4.0e-58	90.23	glycine-rich RNA-binding protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1G631	4.0e-58	90.70	glycine-rich RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JGK0	4.5e-57	89.08	glycine-rich RNA-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC11148430...	[more]
A0A1S3CE16	2.5e-55	88.30	glycine-rich RNA-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499671 ...	[more]

BLAST of HG10000453 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21660.2	2.3e-37	71.01	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.1	1.1e-36	67.40	cold, circadian rhythm, and rna binding 2	[more]
AT4G39260.1	1.7e-32	66.67	cold, circadian rhythm, and RNA binding 1	[more]
AT4G39260.2	1.9e-31	66.91	cold, circadian rhythm, and RNA binding 1	[more]
AT5G61030.1	1.4e-18	54.71	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 2.0E-28 score: 110.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..79 e-value: 4.1E-23 score: 81.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 19.825935
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..106 e-value: 3.2E-31 score: 110.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..169
None	No IPR available	PANTHER	PTHR48024:SF22	RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED	coord: 1..169
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..169
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000453.1	HG10000453.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006858	extracellular transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:1990428	miRNA transport
biological_process	GO:0050688	regulation of defense response to virus
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030126	COPI vesicle coat
molecular_function	GO:0035198	miRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0035197	siRNA binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0003676	nucleic acid binding