HG10000248 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000248
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr09: 2719178 .. 2721606 (+)
RNA-Seq ExpressionHG10000248
SyntenyHG10000248
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGAGGGGGTGTGACAATGTCCCTCAAGATGAAGAGGGAATCCTTCAGGCCAGCGAAACCCTTGACCTTTCAAAATTGCTCAAACTCTCGTTCTCCTTCACACCGTCTCTCTCATGCTGGAAAAATCCTCACGCTGCCTTAACAAAACCCTTGATCTCCCTCTACTCTCTTCTTAACGAGGAGGCTAACAAGGTGAAGCAGAAGAAATTGAAGAAGCCTATAATTTCGATGACTAAGGTGGCTGCGAAGATTGATGTGAACGATCTGTTGGCATTTTTTATCGATGTGTCGGTAAGGCGATATGATATACATGATGATGCATTTTGATATGATATGCTTGATGATGCATTCTTTATTTTATCTGATCTATGTTGAGCTGCTTGTTTTGAAAAAAAATTATTGTCGATTGATTGTTATTGACTCTCTTCTTCTTCTTCTTCTTCCATGTTTATGTTTGGTGATAGGGCTTGTACAAGACTCAGCAGGATCGATATTCAACTGATAAGATTTTCTGATTAGTCGCATTTTCGGACGTGAGGGCTTCTCCATTTTTGTGGGTGAATTTTTCGAACCACATTTTTGGTCTTCCAAATTTGCATCTGCCCTGAGTTGAATTTGGAAGACCAAAAATGGGGCAGATATCTGTTAAAACTTCTAGACAACCCTGAGTTGAATGGATATCTACCCCATGTCTAATTGGAGTCAATCCCTTGAAATTTTGGATCTTTTTTAAACTAATTTTTCAGGAGGGATTCCCAGCTCCATTGGTGAAGCCAAGGCCTTGACATACTTTGACCTTAGTTTTTGAAGCTTCGATGGTAAAATTCCAAAATCAATTAGAAACCTTAGACAAATGCCTAATTTCCAAATCCATTATAATCCTTTCATGAGTTCAGTATCAAATTATGTTTTCAACCTCACCCAAGAAGCTTCATCTCATTCATTTGCAAATGTTCGTTCAATATCAAATTGTTTGTGCTTAATCCTTTAGGTCCCTTGTACTGGTGAAGAATAATCTTTATGCTAAATGTTCTAGTTTTATATATCATATAGATGTATATGTTGTGTTATATGGATTATCATGCTCTGGTTGTCTTTGCTTTTTAATTGTTCATGGTTTTGATTGGATTTGGATGGTTAACATTTTAGGGGTACTTGTTCATGGTTTTGTTGCCAACACTTTCATAACGGATGGGTCGTTTTCTTTTATACCATTTTTGGGGATCCAAATAGAGGTATGTTCGCAATTTGTTTTAATTTTCCCCTCTACAACTTCTGTGATTCTCCTTCAAGGCTTCAATATTATGATTACTTCAGTCTATTATTATATCTTTACTTCTTCACCCTGCTTGTCTTTTGTTGCTTTGAAATACTTTGATACTATCTAGAGTGCCAAGCAAAACAATCACATTTACTTAGGTTGGTTAACCATTCCATTATGCTACAACATTCCATTCATATTACTTCACCTATAATAGAATTGTAGTTTTTTGCTACCGTTTCTGCATCTTTCTACCTCGGTATTTAGCCCTTAAACTTTATATTGTATATCACACTAAACAGAGTATTCAACAAATAACAGGAGGCCACATTGTCCTATCTGAATGTGAATTAGAAAAACTCTACACAGCCTGTGGTCTGGTTGACTTTGGATGTTTAAGAAATAGGCACTTGTAATGTTGCATGCTACAAAGTGGGTCGTAGCCATAGTGTCACTAGGATAAGGCAAACAATCTTATCCATATACTAAGGACCATTTAGGTTATTACTTAAACATGATCCACCTCTATGTCAATGATAGATGTCAAAAAGTGCATATTTTTACCATCTATTTTATTACTTTTTTTATAGTAAAAAGACACTTTATGTAATATTTTGACCCCAAAATGCCCAAAATCAGTTGAAATGAGCTCATGAGAGATTGATCATAATTAAAAGGTGTTATTTTTTGATTTGGAGGTGATTTGGTGAACTTTGGTAAGTGTTTGAGGCCAGATTGCAGATTTTTGTCTAATGCGAGCGCATCACCTTATTTAGTGCGGGCGCATCAGTGAGCCCTAATTTTTCAGATTCGTGCTCAGTCAATTTGGTTGTTGTTTTCTTGGTCAAAGTTGTTATTCAATGCCTAAAATGTTGGGTAAATGTCAAACCATAATTTTAGGTCATTCCTCAACCCATTCGGACCTATAAAAGAAGGAGAAGTCTTCCATATCAAACATCAACTCTCCATCTATGATTTCATCACACTTTTATCTACAATTCTACCATTGTCGCGTCAGCACCCTTGGACGTTTTCTCAGTTTCTCAAGTTAGTAGCCTTAAGAACGAAAATTGCTCTAAGGCGTGATCACTCTAGGTCATCTCATCCCGTTAAAGCGTGCGGTGAGAGAAGGTTCATCCTTGAGAAAGGAGAACCAATCTAG

mRNA sequence

ATGGATAAGAGGGGGTGTGACAATGTCCCTCAAGATGAAGAGGGAATCCTTCAGGCCAGCGAAACCCTTGACCTTTCAAAATTGCTCAAACTCTCGTTCTCCTTCACACCGTCTCTCTCATGCTGGAAAAATCCTCACGCTGCCTTAACAAAACCCTTGATCTCCCTCTACTCTCTTCTTAACGAGGAGGCTAACAAGGTGAAGCAGAAGAAATTGAAGAAGCCTATAATTTCGATGACTAAGGTGGCTGCGAAGATTGATGTGAACGATCTGTTGGCATTTTTTATCGATGTGTCGTTTCTCAAGTTAGTAGCCTTAAGAACGAAAATTGCTCTAAGGCGTGATCACTCTAGGTCATCTCATCCCGTTAAAGCGTGCGGTGAGAGAAGGTTCATCCTTGAGAAAGGAGAACCAATCTAG

Coding sequence (CDS)

ATGGATAAGAGGGGGTGTGACAATGTCCCTCAAGATGAAGAGGGAATCCTTCAGGCCAGCGAAACCCTTGACCTTTCAAAATTGCTCAAACTCTCGTTCTCCTTCACACCGTCTCTCTCATGCTGGAAAAATCCTCACGCTGCCTTAACAAAACCCTTGATCTCCCTCTACTCTCTTCTTAACGAGGAGGCTAACAAGGTGAAGCAGAAGAAATTGAAGAAGCCTATAATTTCGATGACTAAGGTGGCTGCGAAGATTGATGTGAACGATCTGTTGGCATTTTTTATCGATGTGTCGTTTCTCAAGTTAGTAGCCTTAAGAACGAAAATTGCTCTAAGGCGTGATCACTCTAGGTCATCTCATCCCGTTAAAGCGTGCGGTGAGAGAAGGTTCATCCTTGAGAAAGGAGAACCAATCTAG

Protein sequence

MDKRGCDNVPQDEEGILQASETLDLSKLLKLSFSFTPSLSCWKNPHAALTKPLISLYSLLNEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVSFLKLVALRTKIALRRDHSRSSHPVKACGERRFILEKGEPI
Homology
[Close]
BLAST of HG10000248 vs. NCBI nr
Match: XP_038892863.1 (uncharacterized protein LOC120081776 [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 4.4e-04
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA KVKQKK KKP IS+ + AAKIDVNDLLAF  DVS
Sbjct: 123 NEEAKKVKQKKPKKPKISVAEAAAKIDVNDLLAFLTDVS 161

[Close]
BLAST of HG10000248 vs. NCBI nr
Match: XP_004142274.1 (uncharacterized protein LOC101205264 [Cucumis sativus] >KGN49627.1 hypothetical protein Csa_018449 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 5.7e-04
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA KVKQKK KKP +S+ + AAKIDVNDLLAF  DVS
Sbjct: 123 NEEAKKVKQKKPKKPKVSVAEAAAKIDVNDLLAFLTDVS 161

[Close]
BLAST of HG10000248 vs. NCBI nr
Match: XP_022155363.1 (uncharacterized protein LOC111022504 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-04
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA KVKQKK KKP IS+ + AAKIDVNDLLAF  DVS
Sbjct: 133 NEEAKKVKQKKPKKPKISVAEAAAKIDVNDLLAFLDDVS 171

[Close]
BLAST of HG10000248 vs. NCBI nr
Match: KAG7030585.1 (Transmembrane protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.3 bits (129), Expect = 9.8e-04
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA K+KQKK KKP IS+ + AAKIDVNDLLAF  DVS
Sbjct: 123 NEEAKKLKQKKPKKPKISVAEAAAKIDVNDLLAFLTDVS 161

[Close]
BLAST of HG10000248 vs. NCBI nr
Match: XP_022942608.1 (uncharacterized protein LOC111447592 [Cucurbita moschata] >KAG6599904.1 Transmembrane protein 214-A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 9.8e-04
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA K+KQKK KKP IS+ + AAKIDVNDLLAF  DVS
Sbjct: 123 NEEAKKLKQKKPKKPKISVAEAAAKIDVNDLLAFLTDVS 161

[Close]
BLAST of HG10000248 vs. ExPASy TrEMBL
Match: A0A0A0KMK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G031960 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-04
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA KVKQKK KKP +S+ + AAKIDVNDLLAF  DVS
Sbjct: 123 NEEAKKVKQKKPKKPKVSVAEAAAKIDVNDLLAFLTDVS 161

[Close]
BLAST of HG10000248 vs. ExPASy TrEMBL
Match: A0A6J1DMR8 (uncharacterized protein LOC111022504 OS=Momordica charantia OX=3673 GN=LOC111022504 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-04
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA KVKQKK KKP IS+ + AAKIDVNDLLAF  DVS
Sbjct: 133 NEEAKKVKQKKPKKPKISVAEAAAKIDVNDLLAFLDDVS 171

[Close]
BLAST of HG10000248 vs. ExPASy TrEMBL
Match: A0A6J1J6H6 (uncharacterized protein LOC111483016 OS=Cucurbita maxima OX=3661 GN=LOC111483016 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-04
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA K+KQKK KKP IS+ + AAKIDVNDLLAF  DVS
Sbjct: 123 NEEAKKLKQKKPKKPKISVAEAAAKIDVNDLLAFLTDVS 161

[Close]
BLAST of HG10000248 vs. ExPASy TrEMBL
Match: A0A6J1FV87 (uncharacterized protein LOC111447592 OS=Cucurbita moschata OX=3662 GN=LOC111447592 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-04
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 

Query: 61  NEEANKVKQKKLKKPIISMTKVAAKIDVNDLLAFFIDVS 100
           NEEA K+KQKK KKP IS+ + AAKIDVNDLLAF  DVS
Sbjct: 123 NEEAKKLKQKKPKKPKISVAEAAAKIDVNDLLAFLTDVS 161

The following BLAST results are available for this feature:
BLAST of HG10000248 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892863.14.4e-0476.92uncharacterized protein LOC120081776 [Benincasa hispida][more]
XP_004142274.15.7e-0474.36uncharacterized protein LOC101205264 [Cucumis sativus] >KGN49627.1 hypothetical ... [more]
XP_022155363.17.5e-0476.92uncharacterized protein LOC111022504 [Momordica charantia][more]
KAG7030585.19.8e-0474.36Transmembrane protein-like protein, partial [Cucurbita argyrosperma subsp. argyr... [more]
XP_022942608.19.8e-0474.36uncharacterized protein LOC111447592 [Cucurbita moschata] >KAG6599904.1 Transmem... [more]
BLAST of HG10000248 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10000248 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMK42.8e-0474.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G031960 PE=3 SV=1[more]
A0A6J1DMR83.6e-0476.92uncharacterized protein LOC111022504 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1J6H64.7e-0474.36uncharacterized protein LOC111483016 OS=Cucurbita maxima OX=3661 GN=LOC111483016... [more]
A0A6J1FV874.7e-0474.36uncharacterized protein LOC111447592 OS=Cucurbita moschata OX=3662 GN=LOC1114475... [more]
BLAST of HG10000248 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000248.1HG10000248.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane