
HG10000180 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGCCTATGCCAGTGATAGACGTGTTGTCATTTGGAGCTGCTGAGAAGAAGAAAGTAGTGAGCAAGGGATTAGAAACAAAGAGGTTGAGAAAGGAGCATGGTGAATTGCAGAAGATTATTTCTTTTTAGGCTTTTTGAAAGACAGCCATATTGGACGTCAAAACAATTGATACAAGAGACTGACTCTGACCAACCTGAACAATATATGACGAAAATACTTAAAGACCTTTGTGTCTACAACATCAAAGGTGTTTACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAATCATGTGAGGAAACGAAACTGCAATAA ATGAGGCCTATGCCAGTGATAGACGTGTTGTCATTTGGAGCTGCTGAGAAGAAGAAAGTAGTGAGCAAGGGATTAGAAACAAAGAGGCTTTTTGAAAGACAGCCATATTGGACGTCAAAACAATTGATACAAGAGACTGACTCTGACCAACCTGAACAATATATGACGAAAATACTTAAAGACCTTTGTGTCTACAACATCAAAGGTGTTTACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAATCATGTGAGGAAACGAAACTGCAATAA ATGAGGCCTATGCCAGTGATAGACGTGTTGTCATTTGGAGCTGCTGAGAAGAAGAAAGTAGTGAGCAAGGGATTAGAAACAAAGAGGCTTTTTGAAAGACAGCCATATTGGACGTCAAAACAATTGATACAAGAGACTGACTCTGACCAACCTGAACAATATATGACGAAAATACTTAAAGACCTTTGTGTCTACAACATCAAAGGTGTTTACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAATCATGTGAGGAAACGAAACTGCAATAA MRPMPVIDVLSFGAAEKKKVVSKGLETKRLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETKLQ Homology
BLAST of HG10000180 vs. NCBI nr
Match: XP_022990432.1 (general transcription factor IIF subunit 2-like [Cucurbita maxima] >XP_023543024.1 general transcription factor IIF subunit 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543025.1 general transcription factor IIF subunit 2-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32 Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. NCBI nr
Match: XP_022964851.1 (general transcription factor IIF subunit 2-like [Cucurbita moschata]) HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32 Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. NCBI nr
Match: KAG6602326.1 (General transcription factor IIF subunit 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32 Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. NCBI nr
Match: XP_008465665.1 (PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]) HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31 Identity = 79/103 (76.70%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. NCBI nr
Match: XP_008465664.1 (PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]) HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31 Identity = 79/103 (76.70%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: Q03123 (General transcription factor IIF subunit 2 OS=Xenopus laevis OX=8355 GN=gtf2f2 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06 Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: Q2T9L9 (General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05 Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: P13984 (General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=1 SV=2) HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05 Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: Q8R0A0 (General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05 Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: Q01750 (General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05 Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A6J1JIQ3 (Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487292 PE=3 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32 Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A6J1HK34 (Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111464830 PE=3 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32 Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A1S3CPE2 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103503304 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32 Identity = 79/103 (76.70%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A1S3CPB8 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103503304 PE=3 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32 Identity = 79/103 (76.70%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A0A0KQP0 (TFIIF_beta domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G492360 PE=4 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31 Identity = 77/103 (74.76%), Postives = 82/103 (79.61%), Query Frame = 0
BLAST of HG10000180 vs. TAIR 10
Match: AT3G52270.1 (Transcription initiation factor IIF, beta subunit ) HSP 1 Score: 89.7 bits (221), Expect = 1.3e-18 Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 0
BLAST of HG10000180 vs. TAIR 10
Match: AT1G75510.1 (Transcription initiation factor IIF, beta subunit ) HSP 1 Score: 84.7 bits (208), Expect = 4.1e-17 Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|