HG10000165 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000165
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioncellulose synthase-like protein H1
LocationChr09: 1644576 .. 1644924 (-)
RNA-Seq ExpressionHG10000165
SyntenyHG10000165
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAGGTAACGAAGAAGGGATCGTCCTCTTTGAATGATGATGGTGAAATGGAGGAGGATTCTGGTCAATTCACATTCGATGAGTCTTTATTGTTCGTGCTAGCCACGACAATTTTGATGATTCAATTGGCGGCCCTTTCAATCGGTTTGTTGAGATTAGTGGGGCAAATCATGTTATTGAAGAAATTGGGGTGGGGGAGATGATATGCAGTGCGTGGTTGAGTTTGTGCTTTTGGCCATTTTTGAAGGGAATGTTTGCAAGGGAAGATTTGAAATCCCTTGGCCAACCTTGTGCAAGTCTATTGCTTTGACTTTATTGTTTGTGTACTTTGCGTTAAAGAACTAA

mRNA sequence

ATGTTTGAGGTAACGAAGAAGGGATCGTCCTCTTTGAATGATGATGGTGAAATGGAGGAGGATTCTGGTCAATTCACATTCGATGAGTCTTTATTGTTCGTGCTAGCCACGACAATTTTGATGATTCAATTGGCGGCCCTTTCAATCGGGAATGTTTGCAAGGGAAGATTTGAAATCCCTTGGCCAACCTTGTGCAAGTCTATTGCTTTGACTTTATTGTTTGTGTACTTTGCGTTAAAGAACTAA

Coding sequence (CDS)

ATGTTTGAGGTAACGAAGAAGGGATCGTCCTCTTTGAATGATGATGGTGAAATGGAGGAGGATTCTGGTCAATTCACATTCGATGAGTCTTTATTGTTCGTGCTAGCCACGACAATTTTGATGATTCAATTGGCGGCCCTTTCAATCGGGAATGTTTGCAAGGGAAGATTTGAAATCCCTTGGCCAACCTTGTGCAAGTCTATTGCTTTGACTTTATTGTTTGTGTACTTTGCGTTAAAGAACTAA

Protein sequence

MFEVTKKGSSSLNDDGEMEEDSGQFTFDESLLFVLATTILMIQLAALSIGNVCKGRFEIPWPTLCKSIALTLLFVYFALKN
Homology
BLAST of HG10000165 vs. NCBI nr
Match: XP_038902592.1 (cellulose synthase-like protein H1 isoform X2 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 3.3e-20
Identity = 65/116 (56.03%), Postives = 70/116 (60.34%), Query Frame = 0

Query: 1   MFEVTKKGSSSLNDDGEMEEDSGQFTFDESLLFVLATTILMIQLAALSI----------- 60
           MFEVTKKGSSS NDDGEMEEDS +FTFD+S LFV ATTIL+IQL ALSI           
Sbjct: 658 MFEVTKKGSSSSNDDGEMEEDSSRFTFDDSSLFVPATTILIIQLVALSIGLLRLVEANHV 717

Query: 61  ------------------------GNVCKGRFEIPWPTLCKSIALTLLFVYFALKN 82
                                   G + KGRF IPWPTLCKSI+LTLLFV   LKN
Sbjct: 718 IEEVMVGEMICSVWLILCFWPFLKGMLAKGRFGIPWPTLCKSISLTLLFVSVMLKN 773

BLAST of HG10000165 vs. NCBI nr
Match: XP_038902591.1 (cellulose synthase-like protein H1 isoform X1 [Benincasa hispida])

HSP 1 Score: 108.2 bits (269), Expect = 3.3e-20
Identity = 65/116 (56.03%), Postives = 70/116 (60.34%), Query Frame = 0

Query: 1   MFEVTKKGSSSLNDDGEMEEDSGQFTFDESLLFVLATTILMIQLAALSI----------- 60
           MFEVTKKGSSS NDDGEMEEDS +FTFD+S LFV ATTIL+IQL ALSI           
Sbjct: 663 MFEVTKKGSSSSNDDGEMEEDSSRFTFDDSSLFVPATTILIIQLVALSIGLLRLVEANHV 722

Query: 61  ------------------------GNVCKGRFEIPWPTLCKSIALTLLFVYFALKN 82
                                   G + KGRF IPWPTLCKSI+LTLLFV   LKN
Sbjct: 723 IEEVMVGEMICSVWLILCFWPFLKGMLAKGRFGIPWPTLCKSISLTLLFVSVMLKN 778

BLAST of HG10000165 vs. NCBI nr
Match: XP_023512253.1 (cellulose synthase-like protein H1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 60/116 (51.72%), Postives = 70/116 (60.34%), Query Frame = 0

Query: 2   FEVTKKGSSSLNDDGEMEEDSGQFTFDESLLFVLATTILMIQLAALSIG----------- 61
           FEVTKKGSS+ ND+ E++ED G+FTF+ES LF+ ATTI+MIQL ALSIG           
Sbjct: 624 FEVTKKGSSTSNDEDEVKEDLGRFTFNESPLFIPATTIMMIQLIALSIGLSRSMKAGSHV 683

Query: 62  --------NVC-----------------KGRFEIPWPTLCKSIALTLLFVYFALKN 82
                    +C                 KGRF IPWPTLCKS ALTLLFV+FAL N
Sbjct: 684 ITELPIGEMICSAWLILCFWPFLKGMFAKGRFGIPWPTLCKSSALTLLFVFFALTN 739

BLAST of HG10000165 vs. NCBI nr
Match: XP_022944069.1 (cellulose synthase-like protein H1 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 8.5e-16
Identity = 59/114 (51.75%), Postives = 66/114 (57.89%), Query Frame = 0

Query: 2   FEVTKKGSSSLNDDGEMEEDSGQFTFDESLLFVLATTILMIQLAALSIG----------- 61
           FEVTKKG S+ ND+ E++ED G+FTFDES LFV ATTI+MIQL ALSIG           
Sbjct: 628 FEVTKKGLSTSNDEDEVKEDLGRFTFDESPLFVPATTIMMIQLMALSIGLSRSMEARSYV 687

Query: 62  --------NVC-----------------KGRFEIPWPTLCKSIALTLLFVYFAL 80
                    +C                 KGRF IPWPTLCKS A TLLFV FAL
Sbjct: 688 ITELPMGEMICSVWLVLCFWPFLKGMFAKGRFGIPWPTLCKSSAFTLLFVLFAL 741

BLAST of HG10000165 vs. NCBI nr
Match: KAG6570895.1 (Cellulose synthase-like protein H1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 58/114 (50.88%), Postives = 65/114 (57.02%), Query Frame = 0

Query: 2   FEVTKKGSSSLNDDGEMEEDSGQFTFDESLLFVLATTILMIQLAALSIG----------- 61
           FEVTKKG S+ ND+ E+ ED G+FTFDES LFV ATTI+MIQL AL IG           
Sbjct: 628 FEVTKKGLSTSNDEDEVREDLGRFTFDESPLFVSATTIMMIQLMALPIGLSRSMEAGSHV 687

Query: 62  --------NVC-----------------KGRFEIPWPTLCKSIALTLLFVYFAL 80
                    +C                 KGRF IPWPTLCKS A TLLFV+FAL
Sbjct: 688 ITELPVGEMICSVWLILCFWPFLKGMFAKGRFGIPWPTLCKSSAFTLLFVFFAL 741

BLAST of HG10000165 vs. ExPASy Swiss-Prot
Match: Q339N5 (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-04
Identity = 31/119 (26.05%), Postives = 51/119 (42.86%), Query Frame = 0

Query: 1   MFEVTKKGSSSLNDDGEMEE-DSGQFTFDESLLFVLATTILMIQLAALSIGN-------- 60
           +FEVT+K  S+ + D   +E + G+FTFDES +F+  T + M+ + A+++G         
Sbjct: 632 VFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALAMLSVIAIAVGAWRVVLVTT 691

Query: 61  -----------------------------VCKGRFEIPWPTLCKSIALTLLFVYFALKN 82
                                        V  GR+ IPW    K+  L  +F+ F  +N
Sbjct: 692 EGLPGGPGISEFISCGWLVLCFMPLLRGLVGSGRYGIPWSIKMKACLLVAIFLLFCKRN 750

BLAST of HG10000165 vs. ExPASy TrEMBL
Match: A0A6J1FVZ4 (cellulose synthase-like protein H1 OS=Cucurbita moschata OX=3662 GN=LOC111448620 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.1e-16
Identity = 59/114 (51.75%), Postives = 66/114 (57.89%), Query Frame = 0

Query: 2   FEVTKKGSSSLNDDGEMEEDSGQFTFDESLLFVLATTILMIQLAALSIG----------- 61
           FEVTKKG S+ ND+ E++ED G+FTFDES LFV ATTI+MIQL ALSIG           
Sbjct: 628 FEVTKKGLSTSNDEDEVKEDLGRFTFDESPLFVPATTIMMIQLMALSIGLSRSMEARSYV 687

Query: 62  --------NVC-----------------KGRFEIPWPTLCKSIALTLLFVYFAL 80
                    +C                 KGRF IPWPTLCKS A TLLFV FAL
Sbjct: 688 ITELPMGEMICSVWLVLCFWPFLKGMFAKGRFGIPWPTLCKSSAFTLLFVLFAL 741

BLAST of HG10000165 vs. ExPASy TrEMBL
Match: A0A6J1CHE2 (cellulose synthase-like protein H1 OS=Momordica charantia OX=3673 GN=LOC111011206 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 55/111 (49.55%), Postives = 65/111 (58.56%), Query Frame = 0

Query: 1   MFEVTKKGSSSLNDD-GEMEEDSGQFTFDESLLFVLATTILMIQLAAL------------ 60
           MFEVTKK SSS +DD GE++EDSG FTFDES LFV  TT+LM+QL AL            
Sbjct: 666 MFEVTKKESSSSSDDGGEIDEDSGPFTFDESSLFVPGTTVLMMQLTALFMSIWRRPAKPD 725

Query: 61  SIGNVC------------------KGRFEIPWPTLCKSIALTLLFVYFALK 81
            +G V                   KGRF IP+ T+CKS ALT+LFVY + K
Sbjct: 726 GVGEVMCSVWLIFCFWPFLKGMFGKGRFGIPFSTMCKSSALTMLFVYLSEK 776

BLAST of HG10000165 vs. ExPASy TrEMBL
Match: A0A6J1CI91 (cellulose synthase-like protein H1 OS=Momordica charantia OX=3673 GN=LOC111011183 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 51/112 (45.54%), Postives = 59/112 (52.68%), Query Frame = 0

Query: 1   MFEVTKKGSSSLNDDGEMEEDSGQFTFDESLLFVLATTILMIQLAALSIG---------- 60
           +FEVTKK SSS N     + D G+ TFDES  FV  TTILMIQLAALSIG          
Sbjct: 628 VFEVTKKESSSTNGAQGTDGDLGRLTFDESPFFVPGTTILMIQLAALSIGLLGRQSIVQE 687

Query: 61  -----NVC-----------------KGRFEIPWPTLCKSIALTLLFVYFALK 81
                 +C                 KGR+ +PWPTLCKS AL  LFV + +K
Sbjct: 688 FGVGEVICSVWLILSFWPFLKGLFSKGRYGLPWPTLCKSSALAFLFVVYCVK 739

BLAST of HG10000165 vs. ExPASy TrEMBL
Match: A0A6J1FV74 (cellulose synthase-like protein H1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448395 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 51/110 (46.36%), Postives = 59/110 (53.64%), Query Frame = 0

Query: 1   MFEVTKKGSSSLNDDGE-MEEDSGQFTFDESLLFVLATTILMIQLAALSI---------- 60
           +FE+TKK SSS +DD E  + D G+FTFDES +FV  TTILMIQLAAL I          
Sbjct: 622 VFEITKKESSSSSDDKESTDRDLGRFTFDESPIFVPVTTILMIQLAALLISFLGTQTSVQ 681

Query: 61  ----------------------GNVCKGRFEIPWPTLCKSIALTLLFVYF 78
                                 G   KG + +PWPTL KS ALT LFVYF
Sbjct: 682 EFGVAEVMSCVWLILCFWSFLKGMFAKGSYGLPWPTLLKSSALTFLFVYF 731

BLAST of HG10000165 vs. ExPASy TrEMBL
Match: A0A6J1FXB7 (cellulose synthase-like protein H1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448395 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 51/110 (46.36%), Postives = 59/110 (53.64%), Query Frame = 0

Query: 1   MFEVTKKGSSSLNDDGE-MEEDSGQFTFDESLLFVLATTILMIQLAALSI---------- 60
           +FE+TKK SSS +DD E  + D G+FTFDES +FV  TTILMIQLAAL I          
Sbjct: 632 VFEITKKESSSSSDDKESTDRDLGRFTFDESPIFVPVTTILMIQLAALLISFLGTQTSVQ 691

Query: 61  ----------------------GNVCKGRFEIPWPTLCKSIALTLLFVYF 78
                                 G   KG + +PWPTL KS ALT LFVYF
Sbjct: 692 EFGVAEVMSCVWLILCFWSFLKGMFAKGSYGLPWPTLLKSSALTFLFVYF 741

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902592.13.3e-2056.03cellulose synthase-like protein H1 isoform X2 [Benincasa hispida][more]
XP_038902591.13.3e-2056.03cellulose synthase-like protein H1 isoform X1 [Benincasa hispida][more]
XP_023512253.11.5e-1751.72cellulose synthase-like protein H1 [Cucurbita pepo subsp. pepo][more]
XP_022944069.18.5e-1651.75cellulose synthase-like protein H1 [Cucurbita moschata][more]
KAG6570895.11.1e-1550.88Cellulose synthase-like protein H1, partial [Cucurbita argyrosperma subsp. soror... [more]
Match NameE-valueIdentityDescription
Q339N52.6e-0426.05Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica OX=39947 GN=C... [more]
Match NameE-valueIdentityDescription
A0A6J1FVZ44.1e-1651.75cellulose synthase-like protein H1 OS=Cucurbita moschata OX=3662 GN=LOC111448620... [more]
A0A6J1CHE23.2e-1349.55cellulose synthase-like protein H1 OS=Momordica charantia OX=3673 GN=LOC11101120... [more]
A0A6J1CI913.0e-1145.54cellulose synthase-like protein H1 OS=Momordica charantia OX=3673 GN=LOC11101118... [more]
A0A6J1FV743.0e-1146.36cellulose synthase-like protein H1 isoform X2 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1FXB73.0e-1146.36cellulose synthase-like protein H1 isoform X1 OS=Cucurbita moschata OX=3662 GN=L... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000165.1HG10000165.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity