HG10000074 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000074
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nuclear transcription factor Y subunit B-3
Location	Chr09: 585804 .. 586424 (-)
RNA-Seq Expression	HG10000074
Synteny	HG10000074

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGTAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACCGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTGTTGTGGGCCATGACTACGCTTGGATTCGAAGAGTACGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGGGCTAATGGTGGTGGTGGTGGTGGTGGTGGAGGAGTCAACTCTGGTACTGCTGGCGGCGGTGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGTTGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGGTGGTGGATTTCACCACATGGGTATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGCACCGGTCATCGGTAG

mRNA sequence

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGTAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACCGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTGTTGTGGGCCATGACTACGCTTGGATTCGAAGAGTACGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGGGCTAATGGTGGTGGTGGTGGTGGTGGTGGAGGAGTCAACTCTGGTACTGCTGGCGGCGGTGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGTTGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGGTGGTGGATTTCACCACATGGGTATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGCACCGGTCATCGGTAG

Coding sequence (CDS)

ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGTAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCAAAAGATGCAAAAGAAACCGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTGTTGTGGGCCATGACTACGCTTGGATTCGAAGAGTACGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGGGCTAATGGTGGTGGTGGTGGTGGTGGTGGAGGAGTCAACTCTGGTACTGCTGGCGGCGGTGGTGGATTTAACGGAGTGGGTGGAATGTATGGTGGGTTGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGGTGGTGGATTTCACCACATGGGTATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGCACCGGTCATCGGTAG

Protein sequence

MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGANGGGGGGGGGVNSGTAGGGGGFNGVGGMYGGLMMMGHHQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR

Homology

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BLAST of HG10000074 vs. NCBI nr
Match: XP_008464158.1 (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_008464159.1 PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >KAA0060811.1 nuclear transcription factor Y subunit B-3 [Cucumis melo var. makuwa] >TYK08821.1 nuclear transcription factor Y subunit B-3 [Cucumis melo var. makuwa])

HSP 1 Score: 329.3 bits (843), Expect = 2.3e-86
Identity = 192/209 (91.87%), Postives = 194/209 (92.82%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGGVN-SGTA--GGGGGFNGVGGMYGGLMMMGHHQ 180
           GRQGEKDGGGGGPGGS         GGGVN SGTA  G GGG+NGVGGMYGG+MMMGHHQ
Sbjct: 121 GRQGEKDGGGGGPGGS---------GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQ 180

Query: 181 GGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
           GGVYGG GFHHMGIGGGKGGSG SGTGHR
Sbjct: 181 GGVYGGAGFHHMGIGGGKGGSGASGTGHR 200

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BLAST of HG10000074 vs. NCBI nr
Match: XP_004139999.1 (nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN46611.1 hypothetical protein Csa_005340 [Cucumis sativus])

HSP 1 Score: 323.9 bits (829), Expect = 9.8e-85
Identity = 190/210 (90.48%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGGVNSGTA---GGGGGFNGVGGMYGGLMMMGHHQ 180
           GRQGEKDGGGGGPGGS         GGGVNS  A   G GGG+NGVGGMYGG+MMMGHHQ
Sbjct: 121 GRQGEKDGGGGGPGGS---------GGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQ 180

Query: 181 GGVYGGGGFHHMGIGGGKGGSGG-SGTGHR 207
           GGVYGG GFHHMGIG GKGGSGG SGTGHR
Sbjct: 181 GGVYGGAGFHHMGIGSGKGGSGGASGTGHR 201

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BLAST of HG10000074 vs. NCBI nr
Match: XP_023532503.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.6 bits (828), Expect = 1.3e-84
Identity = 193/211 (91.47%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKD--GGGGGPGGSGANGGGGGGGGGVNSGTAGG--GGGFNGVGGMYGGLMMMGH 180
            G +GEKD  GGGGGPGGSGAN     GGGGVN GT GG  GGGFNGVGGMYGG+MMMGH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGAN----VGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
           HQGGVYG GGFHHMGIGGGKGG+GGSGTGHR
Sbjct: 181 HQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 207

[Close]

BLAST of HG10000074 vs. NCBI nr
Match: XP_022947534.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918.1 Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323.2 bits (827), Expect = 1.7e-84
Identity = 195/211 (92.42%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKD--GGGGGPGGSGANGGGGGGGGGVNSGTAGG--GGGFNGVGGMYGGLMMMGH 180
            G +GEKD  GGGGGPGGSGAN  GGGGGGGVN GT GG  GGGFNGVGGMYGG+MMMGH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGAN-VGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
           HQGGVYG GGFH MGIGGGKGG+GGSGTGHR
Sbjct: 181 HQGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210

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BLAST of HG10000074 vs. NCBI nr
Match: XP_038901772.1 (nuclear transcription factor Y subunit B-3 [Benincasa hispida] >XP_038901773.1 nuclear transcription factor Y subunit B-3 [Benincasa hispida])

HSP 1 Score: 323.2 bits (827), Expect = 1.7e-84
Identity = 192/208 (92.31%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGGVNSGTAGGGGGFNGVGGMYGGLMMMG--HHQG 180
           GRQGEKDGGGGGPGGSGANGGGGGGGGG      GGG      GGMYGG+MMMG  HHQG
Sbjct: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGG------GGGVNSGTTGGMYGGMMMMGHHHHQG 180

Query: 181 GVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
           GVYGGGGFHHMGIGGGKGGSGGSGTGHR
Sbjct: 181 GVYGGGGFHHMGIGGGKGGSGGSGTGHR 202

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BLAST of HG10000074 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.0e-52
Identity = 121/150 (80.67%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQGEKDGGGGGPGGSGANGGGGGGGGGV 150
            GRQG+K+GGGGG G    +GG    GGG+
Sbjct: 121 AGRQGDKEGGGGGGGAGSGSGGAPMYGGGM 148

[Close]

BLAST of HG10000074 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.6e-43
Identity = 137/228 (60.09%), Postives = 151/228 (66.23%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           M DSDNESGG  SNA    SA+EQDRFLPIANVSRIMK+ALPANAKISKDAKETVQECVS
Sbjct: 1   MPDSDNESGG-PSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+Y++PLK YL K+RE+EGEK+  
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAI- 120

Query: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGGVNSGTAGGGGGFNGVGGMYGGLMMMG------ 180
              G    GGGG   SG +G G G     ++    GG G  G GG  G +MMMG      
Sbjct: 121 ---GAAGSGGGGAASSGGSGSGSGSHHHQDASRNNGGYGMYGGGG--GMIMMMGQPMYGS 180

Query: 181 ----------------HHQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
                           HH   V GG G +  G GGG G S  SG G +
Sbjct: 181 PPASSAGYAQPPPPHHHHHQMVMGGKGAYGHGGGGGGGPSPSSGYGRQ 221

[Close]

BLAST of HG10000074 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 8.1e-42
Identity = 124/208 (59.62%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 1   MADSDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGRQGEKDGGGGGPGGSGANGGGGGGGGGVNSGTAGGGGGFNGVGGMYGGLMMMGHH 180
           ++ +GR   + GG  G     A G GG        G  GGGGG       Y       H 
Sbjct: 121 RTGLGR--PQTGGEVGEHQRDAVGDGG--------GFYGGGGGM-----QYHQHHQFLHQ 180

Query: 181 QGGVYGGGGFHHMGIGGGKGGSGGSGTG 205
           Q  +YG         GGG    GG+ +G
Sbjct: 181 QNHMYG-------ATGGGSDSGGGAASG 186

[Close]

BLAST of HG10000074 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.1e-38
Identity = 128/215 (59.53%), Postives = 143/215 (66.51%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSA-KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           M DSDN+SGG ++ A  ELS+ +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YV+PLK YL K+RE+EGE++ 
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAA 120

Query: 121 MGRQGE-KDGGGGGPGGSGANGGGGGGGGGVNSGTAGGGGGFNGVG-GMYGG------LM 180
               G         P          GG  G  +  AG GG    +G  MYG         
Sbjct: 121 ASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAGPGGMMMMMGQPMYGSPPPPPQQQ 180

Query: 181 MMGHHQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
              HH   + G GGF H   GGG G S  SG G +
Sbjct: 181 QQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHGRQ 215

[Close]

BLAST of HG10000074 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 117/199 (58.79%), Postives = 134/199 (67.34%), Query Frame = 0


Query: 11  HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEA 70
           +      +  AKEQDRFLPIANVSRIMK++LPANAKISK++KETVQECVSEFISF+TGEA
Sbjct: 46  YGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEA 105

Query: 71  SDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGG 130
           SDKCQREKRKTINGDDLLWAMTTLGFE YV PLK+YL +YRE EGEK+ +          
Sbjct: 106 SDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKADV---------L 165

Query: 131 GGPGGSGANGGGGGGGGGVNSGTAGGGGGFNGV--GGMY--GGLMMMGHHQGGVYGGGGF 190
           GG GG+ A   G GG  G      GGGGG +GV   G Y   G +   HH      GGG 
Sbjct: 166 GGAGGAAAARHGEGGCCG------GGGGGADGVVIDGHYPLAGGLSHSHHGHQQQDGGGD 225

Query: 191 HHMGIGGGKGGSG-GSGTG 205
             + +GGG  G G  +G G
Sbjct: 226 VGLMMGGGDAGVGYNAGAG 229

[Close]

BLAST of HG10000074 vs. ExPASy TrEMBL
Match: A0A1S3CMC5 (nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC103502105 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 192/209 (91.87%), Postives = 194/209 (92.82%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGGVN-SGTA--GGGGGFNGVGGMYGGLMMMGHHQ 180
           GRQGEKDGGGGGPGGS         GGGVN SGTA  G GGG+NGVGGMYGG+MMMGHHQ
Sbjct: 121 GRQGEKDGGGGGPGGS---------GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQ 180

Query: 181 GGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
           GGVYGG GFHHMGIGGGKGGSG SGTGHR
Sbjct: 181 GGVYGGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of HG10000074 vs. ExPASy TrEMBL
Match: A0A5A7V4W8 (Nuclear transcription factor Y subunit B-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00280 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 192/209 (91.87%), Postives = 194/209 (92.82%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGGVN-SGTA--GGGGGFNGVGGMYGGLMMMGHHQ 180
           GRQGEKDGGGGGPGGS         GGGVN SGTA  G GGG+NGVGGMYGG+MMMGHHQ
Sbjct: 121 GRQGEKDGGGGGPGGS---------GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQ 180

Query: 181 GGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
           GGVYGG GFHHMGIGGGKGGSG SGTGHR
Sbjct: 181 GGVYGGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of HG10000074 vs. ExPASy TrEMBL
Match: A0A0A0KFU2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G112490 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 4.7e-85
Identity = 190/210 (90.48%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGGGGGPGGSGANGGGGGGGGGVNSGTA---GGGGGFNGVGGMYGGLMMMGHHQ 180
           GRQGEKDGGGGGPGGS         GGGVNS  A   G GGG+NGVGGMYGG+MMMGHHQ
Sbjct: 121 GRQGEKDGGGGGPGGS---------GGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQ 180

Query: 181 GGVYGGGGFHHMGIGGGKGGSGG-SGTGHR 207
           GGVYGG GFHHMGIG GKGGSGG SGTGHR
Sbjct: 181 GGVYGGAGFHHMGIGSGKGGSGGASGTGHR 201

[Close]

BLAST of HG10000074 vs. ExPASy TrEMBL
Match: A0A6J1G731 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111451370 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.1e-85
Identity = 195/211 (92.42%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKD--GGGGGPGGSGANGGGGGGGGGVNSGTAGG--GGGFNGVGGMYGGLMMMGH 180
            G +GEKD  GGGGGPGGSGAN  GGGGGGGVN GT GG  GGGFNGVGGMYGG+MMMGH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGAN-VGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
           HQGGVYG GGFH MGIGGGKGG+GGSGTGHR
Sbjct: 181 HQGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of HG10000074 vs. ExPASy TrEMBL
Match: A0A6J1I2E0 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111469875 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.1e-84
Identity = 195/211 (92.42%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKD--GGGGGPGGSGANGGGGGGGGGVNSGTAGG--GGGFNGVGGMYGGLMMMGH 180
            G +GEKD  GGGGGPGGSGAN  GGGGGGGVN GT GG  GGGFNGVGGMYGG+MMM H
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGAN-VGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVH 180

Query: 181 HQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 207
           HQGGVYG GGFHHMGIGGGKGG+GGSGTGHR
Sbjct: 181 HQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of HG10000074 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 206.5 bits (524), Expect = 2.1e-53
Identity = 121/150 (80.67%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQGEKDGGGGGPGGSGANGGGGGGGGGV 150
            GRQG+K+GGGGG G    +GG    GGG+
Sbjct: 121 AGRQGDKEGGGGGGGAGSGSGGAPMYGGGM 148

[Close]

BLAST of HG10000074 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 171.8 bits (434), Expect = 5.8e-43
Identity = 124/208 (59.62%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 1   MADSDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGRQGEKDGGGGGPGGSGANGGGGGGGGGVNSGTAGGGGGFNGVGGMYGGLMMMGHH 180
           ++ +GR   + GG  G     A G GG        G  GGGGG       Y       H 
Sbjct: 121 RTGLGR--PQTGGEVGEHQRDAVGDGG--------GFYGGGGGM-----QYHQHHQFLHQ 180

Query: 181 QGGVYGGGGFHHMGIGGGKGGSGGSGTG 205
           Q  +YG         GGG    GG+ +G
Sbjct: 181 QNHMYG-------ATGGGSDSGGGAASG 186

[Close]

BLAST of HG10000074 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-42
Identity = 87/126 (69.05%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +A+++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK   
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNS 134

Query: 121 GRQGEK 127
            +Q ++
Sbjct: 135 PKQQQQ 139

[Close]

BLAST of HG10000074 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-39
Identity = 92/135 (68.15%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 6   NESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 65
           +ESGG  S  +  L  +EQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISF
Sbjct: 15  HESGGDQSPRS--LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISF 74

Query: 66  ITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGE 125
           +T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLK YL +YREMEG+  T G    
Sbjct: 75  VTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD--TKGSAKG 134

Query: 126 KDGGGGGPGGSGANG 141
            D      G S  NG
Sbjct: 135 GDPNAKKDGQSSQNG 145

[Close]

BLAST of HG10000074 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-39
Identity = 92/135 (68.15%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 6   NESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 65
           +ESGG  S  +  L  +EQDRFLPIAN+SRIMK+ LPAN KI+KDAKE VQECVSEFISF
Sbjct: 15  HESGGDQSPRS--LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISF 74

Query: 66  ITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGE 125
           +T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLK YL +YREMEG+  T G    
Sbjct: 75  VTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD--TKGSAKG 134

Query: 126 KDGGGGGPGGSGANG 141
            D      G S  NG
Sbjct: 135 GDPNAKKDGQSSQNG 145

The following BLAST results are available for this feature:

BLAST of HG10000074 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464158.1	2.3e-86	91.87	PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_0084641...	[more]
XP_004139999.1	9.8e-85	90.48	nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN46611.1 hypothe...	[more]
XP_023532503.1	1.3e-84	91.47	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947534.1	1.7e-84	92.42	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918...	[more]
XP_038901772.1	1.7e-84	92.31	nuclear transcription factor Y subunit B-3 [Benincasa hispida] >XP_038901773.1 n...	[more]

BLAST of HG10000074 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23310	3.0e-52	80.67	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	9.6e-43	60.09	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9FGJ3	8.1e-42	59.62	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	7.1e-38	59.53	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q0J7P4	1.1e-33	58.79	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of HG10000074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CMC5	1.1e-86	91.87	nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC1035021...	[more]
A0A5A7V4W8	1.1e-86	91.87	Nuclear transcription factor Y subunit B-3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KFU2	4.7e-85	90.48	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G1124...	[more]
A0A6J1G731	8.1e-85	92.42	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I2E0	1.1e-84	92.42	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10000074 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	2.1e-53	80.67	nuclear factor Y, subunit B3	[more]
AT5G47640.1	5.8e-43	59.62	nuclear factor Y, subunit B2	[more]
AT2G13570.1	4.9e-42	69.05	nuclear factor Y, subunit B7	[more]
AT2G37060.1	5.1e-39	68.15	nuclear factor Y, subunit B8	[more]
AT2G37060.2	5.1e-39	68.15	nuclear factor Y, subunit B8	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 93..111 score: 44.86 coord: 55..73 score: 50.24 coord: 74..92 score: 38.52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11064:SF128	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3	coord: 1..181
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 27..91 e-value: 2.0E-27 score: 95.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 15..131 e-value: 1.2E-47 score: 163.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..126
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..181
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 58..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000074.1	HG10000074.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding