Cucsat.G9384 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G9384
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	zinc_ribbon_15 domain-containing protein
Location	ctg1672: 134108 .. 135830 (-)
RNA-Seq Expression	Cucsat.G9384
Synteny	Cucsat.G9384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCAAATAAACAGACCCACCATCCCCCAAAATTCCCAAACCCAAAACAAAATGTTCTTCTTCTTCGTTGGAGGTTTAGAGCAACAAGTTCGCCGACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCAACTCCCCGGCCGATCTCGTCGACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCTGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAATTGTAAGCTCTTTTTCCCCCAGTCCTTATCTCCGCCGTCATTTTCCGATCAATCGACATCAGCCACTCTTTTAAGAGCCCTTCGTTGCCGCTCTTGCAACAAAGTAGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTTTGTAAATTTCATAAGTTTTGTGCCTTCTAGTAATCATAATGGTGTATGATCCTTTTATGTGCACTTGAAATCTTGGTTTGGATGAGAAACTTGTGGAATCTATGTGGAACCAAAGATTGAGAATGAAAAATCTTTATTAATACTGATCAATTTCTTCGTTGAAGATGATACACAGAACAAAGCATACTCGTGTACTTTTACAAGCGTTTTACAACCCTAAAACAATGTTCTTAGGAGGTGAGCTCTGGAGAAGTGAACCAAAAGCAAAGCAGAAAGAAATTAAAAAAGGCAAAACCGATCAAATTTATATAGCAGCTTCTAATTTACAAGGGGGATTTTGTAGGGGGCAAGACCCAACATCTTTCTGCTTTTTTTTCTACAGCTTCTGCAAAGTCCAATTGAGAAAATCCTTTTCAAAAGTGAAAGCTGAAAGGAGGGAAGGTATGCTGGTTTTTTTTGTCTCAGCCAGAATGTTTAAGGTTTGAAAAAGGAAGGGGGTGCGGTTGTGTTTATGGGTGTCCTAAGAAATGTTTTTAAGTTAATTAAGTTTAATAATGTTCAAGTTGTTTCGCTGAATGGTAATTGTTTTGCTCCTTCTTCTACTGCATTTCTCCATAACCTGTATCTTACACCTAGCTTATCGTAAGAAACTGGCATGTTCCAAATGTTTGCTCCGTTGACCATTCTTTCTTGCTGACCAATGACGAGCCTCAAGTCCTCATTCAATACCTGTACGAATGATACAAAATGAAAGCCTTCAGATTTTGCTTCCAAATGGTTTGATTTTATCATGCATATAATATTAAGACTTGAGATAATAAAATAGTTCCAAGATGGCAACATATATAGTCATGGTCATGGTTGAGATAACTAACAAAGCTTAAATTAACTAACTTTAATACTCCCCTCAAGATGGATTTAGAAAGTTAATAGCACTCATCTTGGACTATGGAGGATGAAAAGAACTAGAAGGATCATTAGGGTTTGAAGAATCGTTAGAGTTGACAGCCATGAGGGAGAATGCAAGGAACTTCAAGAAGTTTACATTTGCGTTGTACTTGCGTAGATTTATTATGTGCAAAGATGACTTATATACACAGCCATTTTTACTAGTTGAAAAGTGACTAACTAATGGAAGTTAGTTAGATTAACTAACTCTAATAAATGGCAATGAAACTTCAAATATGTTTCTACTAGATTTCTCTTCTAATTTTGTTTTGGAAAGTAGGTCTGGGCAAATTGTGGATGAGAATTATACCTGTTCTGCAAAGTGTCTCCAGAGATAGTGCATGAAGGGAATCTGCTTCAACACAGGAGCAAAATCCAGTGACATTCTATAC

Coding sequence (CDS)

CTCCAAATAAACAGACCCACCATCCCCCAAAATTCCCAAACCCAAAACAAAATGTTCTTCTTCTTCGTTGGAGGTTTAGAGCAACAAGTTCGCCGACTCCTCAAATCCGGCGCCGCCCGTTGTATAAACTGCAACTCCCCGGCCGATCTCGTCGACTATGAGAAAGTCCTAAAGCTTTTCTTTGTTCCTGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAATTGTAAGCTCTTTTTCCCCCAGTCCTTATCTCCGCCGTCATTTTCCGATCAATCGACATCAGCCACTCTTTTAAGAGCCCTTCGTTGCCGCTCTTGCAACAAAGTAGTGGAGCCCGACTTCAGTTTCTGCCCTTACTGTGGATCTTCTTTGTAA

Protein sequence

LQINRPTIPQNSQTQNKMFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL

Homology

[Close]

BLAST of Cucsat.G9384 vs. NCBI nr
Match: XP_011657434.1 (uncharacterized protein LOC105435859 [Cucumis sativus])

HSP 1 Score: 242 bits (618), Expect = 1.07e-80
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cucsat.G9384 vs. NCBI nr
Match: XP_008466714.1 (PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo] >KAA0059901.1 uncharacterized protein E6C27_scaffold108G001990 [Cucumis melo var. makuwa] >TYK24851.1 uncharacterized protein E5676_scaffold184G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (587), Expect = 5.75e-76
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGLEQQVR+LLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NCKLFFPQSLSPPSFSDQS SA L RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cucsat.G9384 vs. NCBI nr
Match: KAE8647272.1 (hypothetical protein Csa_018307 [Cucumis sativus])

HSP 1 Score: 223 bits (569), Expect = 2.92e-72
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 27  EQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQS 86
           EQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQS
Sbjct: 77  EQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQS 136

Query: 87  LSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           LSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 137 LSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 178

[Close]

BLAST of Cucsat.G9384 vs. NCBI nr
Match: XP_038884584.1 (uncharacterized protein LOC120075351 [Benincasa hispida])

HSP 1 Score: 216 bits (551), Expect = 1.84e-70
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGL+QQVR+++KS A RCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLQQQVRQIIKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQST-SATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NCKLFFPQS SPP  SDQS  SA LLRAL CRSCN+VVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSFSPPPISDQSLPSAALLRALHCRSCNRVVEPDFSFCPYCGSSL 112

[Close]

BLAST of Cucsat.G9384 vs. NCBI nr
Match: KAG7016486.1 (hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216 bits (549), Expect = 3.71e-70
Identity = 99/112 (88.39%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGLEQQVR+LLKSGA RCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQSTS-ATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NC LFFPQS SPP  SDQST  ATL R LRCRSCNKVVEP+FSFCP+CGSSL
Sbjct: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of Cucsat.G9384 vs. ExPASy TrEMBL
Match: A0A0A0KDD6 (zinc_ribbon_15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 242 bits (618), Expect = 5.19e-81
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cucsat.G9384 vs. ExPASy TrEMBL
Match: A0A5A7V2D0 (zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001160 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 2.78e-76
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGLEQQVR+LLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NCKLFFPQSLSPPSFSDQS SA L RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cucsat.G9384 vs. ExPASy TrEMBL
Match: A0A1S3CRV3 (uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 2.78e-76
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGLEQQVR+LLKSGAARCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQSTSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NCKLFFPQSLSPPSFSDQS SA L RALRCRSCNKVVEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQSPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of Cucsat.G9384 vs. ExPASy TrEMBL
Match: A0A6J1HEV4 (uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC111462885 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 7.32e-70
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGLEQQVR LLK+GA RCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQ-STSATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NCKLFFP+S SPP  SDQ   SA LLRALRC SCNKVVEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of Cucsat.G9384 vs. ExPASy TrEMBL
Match: A0A6J1JRI4 (uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 4.95e-68
Identity = 96/112 (85.71%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 18  MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 77
           MFFFFVGGLEQQVR+LLKS A RCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 78  NCKLFFPQSLSPPSFSDQSTS-ATLLRALRCRSCNKVVEPDFSFCPYCGSSL 128
           NC LFFP+S SPP  SDQST  A L R LRCRSCNKVVEPDFSFCP+CG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

The following BLAST results are available for this feature:

BLAST of Cucsat.G9384 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G9384 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657434.1	1.07e-80	100.00	uncharacterized protein LOC105435859 [Cucumis sativus]	[more]
XP_008466714.1	5.75e-76	94.59	PREDICTED: uncharacterized protein LOC103504060 [Cucumis melo] >KAA0059901.1 unc...	[more]
KAE8647272.1	2.92e-72	100.00	hypothetical protein Csa_018307 [Cucumis sativus]	[more]
XP_038884584.1	1.84e-70	87.50	uncharacterized protein LOC120075351 [Benincasa hispida]	[more]
KAG7016486.1	3.71e-70	88.39	hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cucsat.G9384 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD6	5.19e-81	100.00	zinc_ribbon_15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385...	[more]
A0A5A7V2D0	2.78e-76	94.59	zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CRV3	2.78e-76	94.59	uncharacterized protein LOC103504060 OS=Cucumis melo OX=3656 GN=LOC103504060 PE=...	[more]
A0A6J1HEV4	7.32e-70	87.50	uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1JRI4	4.95e-68	85.71	uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031493	Zinc-ribbon 15	PFAM	PF17032	zinc_ribbon_15	coord: 40..125 e-value: 4.7E-23 score: 81.7
None	No IPR available	PANTHER	PTHR36718	OS05G0435400 PROTEIN	coord: 18..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G9384.T1	Cucsat.G9384.T1	mRNA