Cucsat.G9312 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G9312
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Ty3/gypsy retrotransposon protein
Location	ctg1658: 1176532 .. 1188273 (-)
RNA-Seq Expression	Cucsat.G9312
Synteny	Cucsat.G9312

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAATCCCATCCAAACCGCACGTTTCCCCCCACGTCATTTGGTTTTGAATCAAACCAACTTTTGTTCATTCACCATTCCCTCTCTTCTTTGCTCACTGATTTTTATAAATATCCCAACCCAAAGGAACAGTTAAAAAAGCAATAGAAATGGCTAATCAAATCACCACCGCTCCTGATCTCTTCACTCCTTACAAGATGGGCAACTTTAATCTATCTCACAGAATCGTATTGGCTCCACTGACAAGACAAAGATCCTACAACAATGTTCCCCAACAACATGCCATCTTGTATTACTCTCAGAGAACCACCAAAGGAGGTTTATTAATAGCTGAGGCCACCGGTGTTTCTGACACTGCCCAAGGGTACCTAATTAATATCATTTTTGTTTTGAATTTAGAGTATCTTGAATCTGTTATCAATGATCTCATTGACCGATTAATAAGTCAAAGTCTAGAAGCAACTCCTCTAGTGGGTTTTTCGTTGAGAGGACCTAACCTCTTTTGTACACATATTCGTGATATTTACGATTTTGGTTCAACGGTCTAAAAGGGTGCCTTCTATTCCTACTTCACAAGATAACACAATGCTTGTAAATCACACAAATCTTTGTTCGATTTCTTTATTGTTTACTATACACGTAAATATTTATCTGTGTCGGTTTCTCTAATATGATCTTTCAATTTGTACATGCTTGCAACGAACTTAGTAGTCAGTGTTGGTGAACCACATAAATTTTTGGATTAATTTCTCTGCTGTTTACTATACACGCTTTCTTTTATTCGTTGATTTGGTAGCAAGTTTCTACCTTTACTGTCTTCTTGTTAACCTCCAAGCTATCCTGATACACCTGGGATATGGACAAAAGAACAAATTGAAGCATGGAAACCAATTGTAGATGCTGTTCATTGCAAAGGTGGAACATTCTTTTGTCAGATATGGCATGTAGGCAGAGTTTCAAACTCAGGTGCCTTTTCTTTTAAAGTTCTTACTTCAATTTGCACAAAATAACATATCAATCTTTTCTTTATTTTAAGAAATAAGTGTCCATTTTGGCTATATGTATAGATTTTCAACCAAATGGACAGGCTCCAATCTCATCATCAGACAAGCCGCTGGCACCGAAAGTTCGGGCTAATGGAATTGATGTTGCACAATTTACCCCTCCAAGACGTCTAAGGACAGATGAAATCCCTCAAATTGTCAACCATTTTAGGCTTGCTGCTAGGAATGCCATTGAAGCTGGTAAGTCCTGTTTTCTTTTACCTAATGGAAGTCCTGCTGTGATTGGATTTTAAGTTTCTTTTGTGATTACTGATTAAGTCTAAAAATTCATTAAAAGCTACAAAAGAGAGAGTGGTAGTTTTCTACTCAGTAGCTTATTCTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTTGGTGTGTTTTTGCTAACTATATGATACACCTCCGATACTTTATCAGTACAGCAGAAGAGGAAAGAAAGAAGTTATCACGTGCACGTGAGAAGCATGTGATAAGAATAATAATGGGAAGGGAGTTAGTTACGTTTGTTAGTATAAATAAAAAAAGGTGGTGAGCGGGAAAGTCAGTTAGTATCTTGAATGTGAGGTTAGTTTCTGGTCTTCCTTGAAAGATAGGGAAACAGAGAGAGATATACCATATTGTACTAGGGTTCGTTCTACTCTATAATCAATAACATAGTACTGATTTCATATCAATTTGGTTTCCATCAAATTGGTATCAGAGCACACTGATTCTGGGCAAGGGGAGGAAAGATGGTTCAGACTCGAATCGAAGAAAAATTAGAAGCGTTTGATCAGGAGGTGCACGGCATTAAGAAGGAGATCGGTAAGATACCAACAATTGAAAAGACATTGATAGAAATATAAAAAAATATGGAAAGACAGAACCAGATGATGTTGAGAATCATGGAGTCGGCGGCGCAAGATCGGTCGACGATGAGCGAAAAACTATTAGAATTAACTATGTGCAATTCTTCGGCGAAGGAGGTAAGCGAATGCGAAGGATCTTCAAAACGGGAGACTGAAACAAAAAAGGTGGAAAAGAAGACAGACGACGAAAGCGGAAGTGAACGCAACAAATTAAAGAAAGTCGAAATGCCGATTTTCAATGGAGATGATCCTGATAACTGGTTATTCCGCGCAGAAAGGTACTTCCAAATTCATAAACTCACTGAATTTGAGAAATTAACTGTATCTACCATTAGCTTTGAGGGCCCTGCATTGAATTGGTATCATTCTCAAGAACGGGAGAAATCTGTAGATTGGGTGAATATGAAAGAGAGACTATTAGTACGTTTCCGATCCATGAGAGAAGGATCGCTGTATGGAAGATTTTTACGAATTCAACAGACAACGACAGTGGAAGAATATCGCAATTTGTTCGACAAGTGGGTAGCCCCGTTGTCAGATTTACCGGAGAAGGTCGTAGAGGAGATGTTCATGTCCGGTTTAAAACCGTGGATACAAGCAGAGATGCACTTCTGTGAGCCAAAGGGATTAGCACAGATGATGCAAATCGCACAGAAGGTAAAGAACAAGGAAGACATACGAAGGGAAGCAAAATTATCCGGATATTCTGGGAAAGGAGTAAAGGTCTCTCATAACAACAATAAAGCTAATGCTAATGTGAATACTGGAGAAAACAAAGGAGGAATGAATTGGTCGATGAGAACAATCACCTTGTGAGGAACCACGAAAGAAGAAACTTGAAAGGAAAGTCCGACAAAACGCTTATCGGATGCTGAGTTCTAATCCAGGAAGGAAAAAGGGCTGTGTTTTCGCTGTAATGAGAAATACTCTCATGATCATAAACGTAAGACGAAAGAGCAAAGAGAATTGAGAATGATGGTAGTATTGGGAGAAGACGAGGAATATGAAATTATTGAAGAGGAAAGGGATAGTCACAATGATGTAATTCAAAGTTAGGATTAAATTCTCAAAATGAATTCTCTGCCTTTTTTCAGGCTAGGAGATTGTCATATATTGATATCTCAAGGTTAGTTACAAGTTAGTTACAAGACTGTTTTGGTTAGTTGGTTACAGCTGTTCTTTTAACTAGTTAGGGATTTTAACTAACTAACTAACTATAGTTTACATCATTCCACCCCCCTAAGGATGGACTCGTCCCAGAGTTCATCAATCAGCAAGCCTGAAATGGTCTGGTGCATGGTATGGTTTTAGGTCAGCAACATTGAAGACTGGGTGTATGTGGATGTCTTGTGGTAGATCGATCTTGAAAGCATTATCTCTGTATTTCTTTAATATAGGGAATGGTCCAATTTGACTGTCTTTCAGCTTGTTGTAGGTGCCAGTAGGAAATCTGCTCTTTTTTAGGTGTACCATCACTAGGTCTCCTTTGTTGAAGTGGGCTTGTCTTCTTTTTTTATCTACTGCTTTTTTGTAGGAATTTGTTGTCTGTATAAGGTGATCATGGACTTCCCTGTATATTTTTTTGATGTTTTCTGCCATGCATTCTGCTTCGTTATTGAGGTCCATAGCTGTAGGGAGTGTAGTGAGATAAAAGGTTAATTGTGGTAGTTTGGTGTAAACTACTTCGAAGGGGGATTTTCCTGTTGATCTGTTCTTCATATTATTGAAGGCGAATTCAGCTTGAGCCAATGCTAGATCCCATTGTTTTGGTTTTGATCCACTAAGGCAGCGTAGCAGATTACCTAGGGTCCTGTTTGTTACTTCAGTTTGTCCATCTGTTTGTGGGTGGGGCTGTGGTGTTGAATTTCATTGTGTCAAACTTCTTCCACAATGTTCGCCAAAAATGGCTTAAGAACTTGACGTCTCTGTCTGATACAATGCTTTTAGGTAGCCCATGTAGTCGTACTACTTCTCTAAAGAAGAGGTTGGCTATGTAGATTGCGTCATTTGTCTTTTTACATGCTACGAAATGGGTCATTTTGCTGAACTTGTCCACTATGACCATTATTGAGTCAAATTGTCTTTGTGTTTTTGGTAATCCAACCACAAAGTCAATTGATAAATCTTCCCATATTGAGGTCGGGATGGGTAGTGGCGAGTATAGTCCTGCATTCGTGCTGGAGCCTTTGGTTCTTTGGCAGATGGGGCATCTCTTTACGAAATTATTGGAATCTCTTCTTATTTGCGGCCAGTAGTATCGTTTGGAGGTGATTTCCAATGTCTTATTCTGTCTGAAGTGTCCAGCTAGCCCTCCAGAATGTGCCTCTTTTATTAAGGCTTCTCGTAGTGAGGTGTGCGGGATGCATAACTGTTCTCCTTTAAACAGATATCCTTCAACAATGTGGTAGTCATCAGAGTCTATGAAGTTGGAGCATTTGTACCAGATATCCTTAAAGTCAATATCTTCTTCGTATAGGTCGGGTAAATGCTTGAATGCTATGATTTTCGAAGACAGTAGTGTGAGTAGGGAGCCTTTTTTGCTTAGAGCATCGGCCACCTTGTTCTCTTTGCCTGATTGGTGTTTGATCACAAAGTCAAACCTTTGGAGGAAGGATATCCAGCGTGCGTGCATCCTGCTGATATTTTTTTGAGCTTGAAGGTATTTTAGTGAGAAATGATCAGTTAGGAGTACGAATTCTTTAGAGAGTAGGTAGTGTTCCCATTGTTTTAGTGCTCGGACAAGGGCATACAACTCTTGTTCATATGTGCTCCAGGACTGTCTCGAGGGGCTGAGTTTTTCACTGAAGTATTCGATAGGATGTCCTCGCTGAGCTAGGACAGCTCCAATCCCTGTGCAGCATGCGTCAACTGCTACTTCAAAAGGTGAAGAGAAGTCTAGTAATTTAAGGATAGGGCTGGATGTCAATTTCTTTTTGATATCTTCAAAGCTCTCTTGTTGCAATGGGGTCCATTTGAAGTTTCCTTTCTTTAGACAGTCAGTTAGGGGTACGGCTAAAGAGCTGAAGTTCCTGATGAATTTCCTGTAAAACGAAGCTAGGCCAAGGAAGGCTTGTATTTCTTTAATGGAGGCAGGAGTCGGCCATGTGTGGATGGCTTCGATCTTCTTTGGTTCCATGCTTATGCTTCCTTGTTTGATTATAAAGCCGAGGAATGCAATTTCTTTTTTCATAAACATGCTTTTCTTAGTATTTATGTAGAGTCTGCCTCTGTCAAAACTTGGAACAGTTTTCTTAGGTGTAGTAAATGCTCATCATTGCTTGTCCTGTAAACAAGTATGTCATCGAAGTAAACTACTATGAATTTGTTGAGAAATGGGTGAAGTACCTGGTTCATCAATCTCATGAAGGTGTTGGGTGCATTAGAAAGGCCGAATGGCATGACCATCCATTCAAATAAGCCTTCGTTTGTCTTGAAAGCTGTCTTCCATTCGTCGCCAGGTCTTATACATATTTGGTGATAGCCACTTTTTAAATCAATCTTCGAAAAAATACTGGCTTTACCGAGTTGATCAAGCAGGTGACTAATCCTTGGAATGGGAAATCTATACTTTATCGTAATACGGTTGATGGCTCTGCTGTCAACGCACATTCTCCAACTTCCATATTTCTTTGGCGTGAGAAGTGCTGGTACTGCACAAGGGCTGAGGCTCGGTTTGATGTGCCCTTTCTTTAGTAATTCCTCAATATGATCATGAAGTATTTTGTACTCCTGGGGGCTCATCCTATAGTGAGCCAAATTTGGTAGTGATGCTCCCGGGATCAAGTCTATGTGGTGCTGTATATCTCGAAGAGGTGGGAGCCCTTCTGGTTCTTCCTTTATATGTGGGAACTCATAAAGGAGCTGCTGTAATTTGGGTTCTATGTCTTCGACCTGTTCTTCCTTAGTTTTTTCAATAACAACCAGTCCTAGGATGTCATGTTCCCTTTCTTTAAGCATCTTTTTCCCACTAACAGTGATGAATACCTGTTTCTCACCTCTTAATCCTTCTTTATTCTTTCTTGTTATTGGGAGTAAAACTACCTTTCTTCCCATCCATTGGAATTCATACGTATTTTCTCTCCCTTTGTGTAATGATTGAGTATCATACTGCCAAGGTCTTCCTAGTAGGAGATGGCATACATCCATCTCAATGACATCACAAACAATTTGGTCTTTGTAGGCGTTTCCAATGGAGAGAGGGACTGTACAGATTTCGCTGACCGTAGCTTCTCCTCCTTTTCTTACCCAACCTATCTTATAAGGGGTTGGATGTGCTTCAGCCTTTAGATTCAGGACTGTTACTAGTTTCTTTGCTACGAAGTTTTCACTGCTGCCGCTGTCTATGATTACATCACATACCCTTCCGTTTATGGTGCATCTTGTCTTGAAAAGACAATGGCGTTGCGGGTTCTTTTCTTCTTTGGGTGTGATTAATACCCGTTGGATAACACAAGAGACCCTTTCCCCATCATCTGCTTCAATCAATTCAGTTTCTTCTTCTGCTTCTATACTGTCTTCACTCGTCTGCCCTCCTTCTTCGGCTATAGCTATGGTTTTTCTTTGCAGGCAGTTGTTGGAGAGGTGGCCAGTTTGGCCACATCGGAAGCATTTTCCTAATGAAGGGCGGGAGTAGCTGTTCTGACCACTGGTTTTGGACATTTGTTCTTTCTTTCTTTTAACGGCTAATTCTTGATTATCAACTTCCTTCCCTTTTCCTTTTGTTGAGGTTAAAGGTTGGTCGTTTGTTTTGTCTGGATAATTGTTCCTTTTTGTTGAAGTTGTCTCCCATGCTGGTCTTCTATTTAGGTTCTTGGATCGAATCGCAATCATCTCTTCCACTGTTTCTGCAAAGGATATTGCTTCAGACAGGAAACGGAATGGTTGTAGTTTGACCTTTTCCTTGATGTCGAATCAGAGACCTCCCACAAATCTTGCAACCTGATGTTGTTCATTTTCGCTTAGGTTTGTTCTTGCACTCAAGCGGTGGAATTCTTCAATGTAGTCCGCTACTGATCGAACACCTTGGCGGCAGTTTTGGTACTGATTGTACAATGTTTGTTCATAGTTTGGGGGTAGGAATCTTGCTTTCAGCAACTTTTTCATCTTTTCCCACGAGCGAATCGGCTGTTTCCCACATCTTTGTCTGTTAATTTCCAACTGATCCCACCAAGCTGATGCACCGGCCCTTAATTTTAAGGCTACTAGGTGGACTTTCTTGCGTTCAGGTGTATCCATGTAGTTGAAGAAATTCTCAGTGCTCTTTATCCAGTCTAAGAATGCTTCTATATTTTGTTTGCCATCATACATGGGAAGGTCAATCTTCATCTTATAATCGTGGTACTCTCCTCTTTTGACTTCATTTCTTCGGTTATTTCTTCCTGCTCGTAAGTCATCATTGAGGTTCCACATGTTTCCTTGTTCATCCCCGCTTGAAGAACCATCTTCTTGGATTTCTTGCCATGCTTCTTGATCTTCTTGAAAGTCTTCGTCAAACTATTGTGGTATGGCGTAACCGGGTCTCCTTCTTTGAAGACCTCGTGGATTGTTCTTGTTTCTGAAGTATCCCCTTGCTCGCCGGCCTCTTGTTTCACCAAAACGATGGTCGTTTTGGATGTTAATTTCATTCCGTGGTGGTGGCTGTGGGAATTCTTCCCTTCGGCTTAACAGTTCGACACTTTCCATCAATCTATCAAATTTGTTGTGGAGATCTCCCAAAGATTCCTCAACAGCCAGCAAGCTAACTGTTGTTGTCCTTGAAGAGAGGGCGGTGATTTCCTCCGCCGCTTCTTGCGCACGGTTTTCCCCCGCGGCAGGGTTGTTACCTCTCCGGCCAGCCATCCGTCCAAGAATCGGGGCTGCTCTGATACCACTTTGATGTAATTCAAAGTTAGGATTGAATTCTCAAAATGAATTCTCTGCCTTTTTTCAGGCTAGGAGATTGTTATATATTGATATCTCAAGGTTAGTTACAAGTTAGTTACAAGACTGTTTTGGTTAGTTAGTTACAAGACTGTTTTGGTTAGTTGGTTACAGCTGTTCTTTTAACTAGTTAGGGATTTTAACTAACTAACTAACTATAGTTTACATCACACAAGGAATTGAACAATCTTTGAGATAGTGGAAGAGAATCAAGTGGTGGTGGAATTGTCCATCAATTCTGTAGTCAGGTTGTCCAATCCAGGAACAATGAAGGTAAAGGGAGAAATTCAGGGAAGGACTGCTATTGTGTTAGTTGACTGTGGAGCCACTCACAATTTCATTTCCGAGAAATTGGTGAAGGAGTTACAACTGAACACAAAGGAGACATCGAATTATGGTGTTATTCTTGGTTCAGGAACAGCAGTCAAAGGGAAGGGAATCTATGAAGCTGTAGAACTGATGTTGGGGGATTGGAAGATTGTGGATGAGTTTCTACCATTGGAGCTCGGAGGGGTGGATGCCATACTAGGGATGCAGTGGCTGTATTCTTTAGGAACAACAGAGGTGGACTGGAAAAATCTAAAGCTGACTTTTACACATGAAGGAAAGAAAGTGAAAATACAAGGAGATCCAAGCCTAACCAAGGCAAGAGTCAGCCTTAAGAAAATGTTGAAGACACTAGGAGAAGAAGATCGAGGCTTTCTGGTTGAGTGCAGAGCCTTAGAGAGAAGTGAAGTATGGGAAGAAGATTTGATAGAAGAAGAATCAGTGGCTGTAATACTTAAGAGCTTTGAGGATGTTTTTGAGTGGCCTGAAACTCTCCCACCACGTAGAGCCATTGAACATCATATACATCTTAAGAAAGGAGTAGATCCGGTGAACGTGAGACCTTACTGATATGCACATCAATAGAAAACAGAGATGGAAAGGTTGGTAGAGGAAATGTTGTCGTTAGGAATAATTCGGCCGAGCACAAGCCCGTATTCAAGTCCTGTTTTATTAGTAAGGAAAAAGGATGGGAGCTTGCGCTTTTGTGTGGATTACCGAGCTCTAAATAATGTGACGGTGCTGACAAGTTTCCAATACCCGTGATTGAAGAGTTGTTTGATGAGCTTAATGGGGCTACGATGTTTTCCAAGATTGACTTAAAGGTCGGGTACCATCAAATTCGAATGAGTACAGAAGATGTGGAGAAAACGGCCTTTAGAACTCATGAGGGTCATTATGAATTTTTAGTAATGCTCTTTGGGTTGACTAATGCTCCAGCTACATTTCAATCCTTGATGAATACGGTGTTTAAGCCCTATTTGAGAAAGTTTGTCTTAGTATCTTTTGATGACATTCTAATATACAGCAGTGATCTCGCGGCTCATCTAAGTCATATGAAGATAGTTTTGGAGGTGTTAAGAAAGAATGAGCTATATGCTAATAAGAAGAAGTGCAGTTTTGCGAAATCGAAGGTAGATCACTTGGGGCATATTATATCCGAAAAGGGGGTGGAGGTTGATCCAGAAAAAATAAGGGCAATTAAGGCATGGCCACTTCCAACGAATGTGAGGGAGGTACGGGGGTTTTTAGGGTTGACTAGCTATTACCGAAAATTTGTGCAACATTATGGCACAATTGCAGCACCATTGACACAGCTGTTGAAGACAGGGGGATTCAAATGGAGTGAAGAAGCTCATGAGGCTTTTGTGAAATTCCAGCAGGCCATGATGACTCTTCCCGTTTTGGCATTACCTGATTTCAATGCACCATTTGAGATAGAGACGGATGCATCAGGATACAGATTGGGAGCCGTGTTAGTACAGAATAAGCGGCCTATTGTCTACTATAGCCATACATTAGCAGTCCGAGACAGAGCGAAACCAATCTATGAAAGGGAGTTGATGACAGTGGTTATGTCAGTACAGAGATGGCATTCTTATTTGTTGGGCCAGAAATTTGTAGTGAAGATAGATCAAAGATCACTCAAGTTTTTGTTGGAGCAAAGAGTGATACGGCCTCAATATAAAAAGTGGATATGTAAGCTATTGGGATATTCAGTTGACGGCCCCTAATATAATTGATGTTGTGGTGATTAAAGAAGAGGTGAATAAGGATGAGAAATTGCAAAAAATCAGGAGAGAATTAGAAGAAAAGAAAGAAGAACCGAATAGTCAGTATTCAGTAAAGCAAGATATGTTAATGTACAAAGGCCGCTTGGTGATTGCAAAAGCTTCTCGACTGACTCCAATGATATTACATACTTACCATGATTCAGTTTTTGGAGGACACTCGGGGTTCTTGAGATTCTTGAGAACCTACAAAAGAATATCAGGAGAGCTTCATTGGGAAGGAATGAAGCAAGATGTCAAGAAATATTGCGAGGAGTGCTTAATCTGTCAGCAAAACAAGACATTAGCATTGTCTCCGGCTGGGTTGTTGACTCCTTTGGAAGTTCCTAATAGAGTTTGGGAAGATATATCCATGGATTTCGTGGAAGGGTTGTCGAAAGCCAATGGAATGGAAGTAATATTTGTGGTAGTAGATCGTTTTAGTAAGTATGGGCATTTTCTGCCACTTAAACACCCTTATACTGCTAAGACTGTATCTGATATCTTTGTTAGAGAGATCGTTCGGTTTCATGGCTTTCCTAAATCAATAGTGTCGGATATCTCTGTCCTTAAGTCACTTTTGGAGGGAGTTGTTCAGACAGGCTGATACATGGCTGAATTATAGTACAGCATACCATCCTCAATCTGATGGTCAAACTGAAATAGTAAACCGGTGAGTAGAAAGTTATTTACGTTGTTTTTGTGGAGAGAAACCGAAGGAATGGGTGAAATGGTTGCATTGGGCAGAATTCTAGTATAATACTACTTATAATCGCTCCTTGGGAACAACTCTGTTTCAGGCTGTGTATGGTAGATTACCTCCTCCGCTGATCTATTACAGAGATCGGGACACACCAAATTCATCACTGGATGAACAGCTGAAGGAGAGGGATGTAGTGCTTGGAGCTTTGAAGGAACATCTACGACTGGCACAAGATAAGATGAAGAAATATGATGACTTAAAAAGGAGAGAAGTTCAATATAATGTGGGAGAATTGGTGCTATTGAAGGTAAGACCTTATAGGCAGACTTCATTGAGGAAGAAGAGGAATGAAAAACTATCTCCTAAGTTTTTCGAACCTTATAAAATTGTAGCATGGATTGGACCGGTAGCTTATAAACTCAAATTGCCTGATGGGGCAGCTATACATCATATTTTTCATGTTTCCCAATAAAAGTAGGTGGTCGGTCCTCATAAAGAAAACAAGGATGAGATCCCTATGTTGACAGAAAGCTATGAGTGGAAGGCTGTACCTGAGGAAGTCCATGGTTACTTAAAGAATAAAGCTGGGAGTTGGGATGTGTTAATAAGTTGGAAGGGATTGCCTCGACATGAAGCTACATGGGAGTTGTATGAGGATATACAGCAGCGCTTTCCAGATTTCCACCTTGAGGACAAGGTGAATTTGGAGAAGGAGAGTAATGATAGACCTCTGATACTTTATCAGTACAGCAGAAGAGGAAAGAAAGAAGTTACAACGCGCATGTGAGAAGCATGTGATAAGAATAATAATGGGAAGGGATTAGTTACGTTTGTTAGTATAAATAATAAAAGGTGGTGAGCGGGAAAGTCAGTTAGTATCTTGAATGTGAGGTTAGTTTTTGTTCTTCCTTGAAAGATAGGGAAACAGAGAGAGATATACTATATTGTACTAGGGTTTGTTCTACTCTATAATCAATAACATAGTACTGATTTCATATCAATTTGGTTTCCATCACTATGCTTTATTTGCGCAAAAGCACTGATATTGCAGTTGAATGAATGAATAATCAACTTGCAGGTTTTGATGGAGTTGAAATCCATGGAGCTCATGGTTACCTTATTGATCAGTTCTTGAAAGATCAAGTGAACGACCGAACAGACCAATA

Coding sequence (CDS)

ATGGCTAATCAAATCACCACCGCTCCTGATCTCTTCACTCCTTACAAGATGGGCAACTTTAATCTATCTCACAGAATCGTATTGGCTCCACTGACAAGACAAAGATCCTACAACAATGTTCCCCAACAACATGCCATCTTGTATTACTCTCAGAGAACCACCAAAGGAGGTTTATTAATAGCTGAGGCCACCGGTGTTTCTGACACTGCCCAAGGCTATCCTGATACACCTGGGATATGGACAAAAGAACAAATTGAAGCATGGAAACCAATTGTAGATGCTGTTCATTGCAAAGGTGGAACATTCTTTTGTCAGATATGGCATGTAGGCAGAGTTTCAAACTCAGATTTTCAACCAAATGGACAGGCTCCAATCTCATCATCAGACAAGCCGCTGGCACCGAAAGTTCGGGCTAATGGAATTGATGTTGCACAATTTACCCCTCCAAGACGTCTAAGGACAGATGAAATCCCTCAAATTGTCAACCATTTTAGGCTTGCTGCTAGGAATGCCATTGAAGCTGGTAAGTCCTGTTTTCTTTTACCTAATGGAAGTCCTGCTGTGATTGGATTTTAA

Protein sequence

MANQITTAPDLFTPYKMGNFNLSHRIVLAPLTRQRSYNNVPQQHAILYYSQRTTKGGLLIAEATGVSDTAQGYPDTPGIWTKEQIEAWKPIVDAVHCKGGTFFCQIWHVGRVSNSDFQPNGQAPISSSDKPLAPKVRANGIDVAQFTPPRRLRTDEIPQIVNHFRLAARNAIEAGKSCFLLPNGSPAVIGF

Homology

[Close]

BLAST of Cucsat.G9312 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-63
Identity = 128/306 (41.83%), Postives = 183/306 (59.80%), Query Frame = 0


Query: 2   FSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPYL 61
           F+ IDL  G+HQI M  E + KTAF T  GHYE+L M FGL NAPATFQ  MN + +P L
Sbjct: 297 FTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLL 356

Query: 62  RKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIISE 121
            K  LV  DDI+I+S+ L  HL+ +++V   L    L     KC F K + + LGHI++ 
Sbjct: 357 NKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTP 416

Query: 122 KGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLK--TGGF 181
            G++ +P K++AI ++P+PT  +E+R FLGLT YYRKF+ +Y  IA P+T  LK  T   
Sbjct: 417 DGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKID 476

Query: 182 KWSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHT 241
               E  EAF K +  ++  P+L LPDF   F + TDAS   LGAVL QN  PI + S T
Sbjct: 477 TQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRT 536

Query: 242 LAVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWI 301
           L   +      E+EL+ +V + + +  YLLG++F++  D + L++L   +    + ++W 
Sbjct: 537 LNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWR 596

Query: 302 CKLLGY 306
            +L  Y
Sbjct: 597 VRLSEY 602

[Close]

BLAST of Cucsat.G9312 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.3e-63
Identity = 126/309 (40.78%), Postives = 178/309 (57.61%), Query Frame = 0


Query: 2   FSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPYL 61
           F+ IDL  G+HQI M  E V KTAF T  GHYE+L M FGL NAPATFQ  MN + +P L
Sbjct: 298 FTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLL 357

Query: 62  RKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIISE 121
            K  LV  DDI+++S+ L  HL  + +V E L K  L     KC F K +   LGH+++ 
Sbjct: 358 NKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTP 417

Query: 122 KGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGG--F 181
            G++ +PEKI AI+ +P+PT  +E++ FLGLT YYRKF+ ++  IA P+T+ LK      
Sbjct: 418 DGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKID 477

Query: 182 KWSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHT 241
             + E   AF K +  +   P+L +PDF   F + TDAS   LGAVL Q+  P+ Y S T
Sbjct: 478 TTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRT 537

Query: 242 LAVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWI 301
           L   +      E+EL+ +V + + +  YLLG+ F +  D + L +L   +    +  +W 
Sbjct: 538 LNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWR 597

Query: 302 CKLLGYSVD 309
            KL  +  D
Sbjct: 598 VKLSEFDFD 606

[Close]

BLAST of Cucsat.G9312 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 8.7e-56
Identity = 118/324 (36.42%), Postives = 183/324 (56.48%), Query Frame = 0


Query: 2   FSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPYL 61
           F+ +DL  G+HQI M   D+ KTAF T  G YEFL + FGL NAPA FQ +++ + + ++
Sbjct: 214 FTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHI 273

Query: 62  RKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIISE 121
            K   V  DDI+++S D   H  ++++VL  L K  L  N +K  F  ++V+ LG+I++ 
Sbjct: 274 GKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTA 333

Query: 122 KGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLK--TGGF 181
            G++ DP+K+RAI   P PT+V+E++ FLG+TSYYRKF+Q Y  +A PLT L +      
Sbjct: 334 DGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANI 393

Query: 182 KWS----------EEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQN 241
           K S          E A ++F   +  + +  +LA P F  PF + TDAS + +GAVL Q+
Sbjct: 394 KSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQD 453

Query: 242 ----KRPIVYYSHTLAVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFV-VKIDQRSLKF 301
                RPI Y S +L   +      E+E++ ++ S+    +YL G   + V  D + L F
Sbjct: 454 DQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTF 513

Query: 302 LLEQRVIRPQYKKWICKLLGYSVD 309
            L  R    + K+W  ++  Y+ +
Sbjct: 514 ALGNRNFNAKLKRWKARIEEYNCE 537

[Close]

BLAST of Cucsat.G9312 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 9.4e-50
Identity = 110/311 (35.37%), Postives = 175/311 (56.27%), Query Frame = 0


Query: 2   FSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPYL 61
           F+ +DLK GYHQI ++  D EKT+F  + G YEF  + FGL NA + FQ  ++ V +  +
Sbjct: 273 FTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQI 332

Query: 62  RKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIISE 121
            K   V  DD++I+S + + H+ H+  VL+ L    +  +++K  F K  V++LG I+S+
Sbjct: 333 GKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSK 392

Query: 122 KGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGG--- 181
            G + DPEK++AI+ +P P  V +VR FLGL SYYR F++ +  IA P+T +LK      
Sbjct: 393 DGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSV 452

Query: 182 ---------FKWSEEAHEAFVKFQQAMMTLPV-LALPDFNAPFEIETDASGYRLGAVLVQ 241
                     +++E    AF + +  + +  V L  PDF  PF++ TDAS   +GAVL Q
Sbjct: 453 SKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQ 512

Query: 242 NKRPIVYYSHTLAVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFV-VKIDQRSLKFLLE 299
             RPI   S TL   ++     EREL+ +V ++ +  ++L G + + +  D + L F + 
Sbjct: 513 EGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVA 572

[Close]

BLAST of Cucsat.G9312 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.1e-45
Identity = 104/290 (35.86%), Postives = 158/290 (54.48%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +F+K+DLK  YH IR+   D  K AFR   G +E+LVM +G++ APA FQ  +NT+    
Sbjct: 497 IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEA 556

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
               V+   DDILI+S   + H+ H+K VL+ L+   L  N+ KC F +S+V  +G+ IS
Sbjct: 557 KESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHIS 616

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTG-GF 180
           EKG     E I  +  W  P N +E+R FLG  +Y RKF+     +  PL  LLK    +
Sbjct: 617 EKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRW 676

Query: 181 KWSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNK-----RPIV 240
           KW+    +A    +Q +++ PVL   DF+    +ETDAS   +GAVL Q        P+ 
Sbjct: 677 KWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVG 736

Query: 241 YYSHTLAVRDRAKPIYERELMTVVMSVQRWHSYLLG--QKFVVKIDQRSL 283
           YYS  ++       + ++E++ ++ S++ W  YL    + F +  D R+L
Sbjct: 737 YYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786

[Close]

BLAST of Cucsat.G9312 vs. NCBI nr
Match: KAA0033035.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK03450.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 461 bits (1187), Expect = 2.97e-160
Identity = 217/308 (70.45%), Postives = 265/308 (86.04%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +FSKIDLK GYHQIRM  +D+ KTAF THEGHYEFLVM FGLTNAPATFQ+LMN++F+P+
Sbjct: 63  VFSKIDLKSGYHQIRMIDKDIPKTAFHTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 122

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
           LRKFVLV F+DILIYS +   H+ H++ V   LRK+ L+ANKKKC+F + KV++LGHIIS
Sbjct: 123 LRKFVLVFFNDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 182

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
            +GVEVD EKI+ +  WP PTN+REVRGFLGLT YYR+FVQHYG+IAAPLTQLLK GGFK
Sbjct: 183 GEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 242

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W+E+A E+F K + AMM+LP LALP+F  PFEIETDASG+ +GAVL+Q+KRPI +YSHTL
Sbjct: 243 WNEDAEESFRKLKSAMMSLPTLALPNFTLPFEIETDASGFGVGAVLIQSKRPIAFYSHTL 302

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           ++RD+A+P+YERELM VV+SVQRW  YLLG KFVVK DQ+SLKFLLEQR+I+PQY+KW+ 
Sbjct: 303 SMRDKARPVYERELMAVVLSVQRWRPYLLGAKFVVKTDQKSLKFLLEQRIIQPQYQKWLS 362

Query: 301 KLLGYSVD 308
           KLLGYS +
Sbjct: 363 KLLGYSFE 370

[Close]

BLAST of Cucsat.G9312 vs. NCBI nr
Match: KAA0047330.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 469 bits (1206), Expect = 5.30e-159
Identity = 225/308 (73.05%), Postives = 265/308 (86.04%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +FSKIDLK GYHQIRM  ED+ KT FRTHEGHYEFLVM FGLTNAPATFQ+LMNT+FKPY
Sbjct: 70  VFSKIDLKSGYHQIRMVDEDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPY 129

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
           LRKFVLV FDDILIYS     H+ H++ V   LR++ L+ANKKKCSFA+ K+++LGH+IS
Sbjct: 130 LRKFVLVFFDDILIYSKYERDHVEHIEKVFLTLRRHALFANKKKCSFAQQKIEYLGHVIS 189

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
            +GVEVDP+KI+AI  WP PTNVREVRGFLGLT YYR+FVQHYG+IAA LTQLLK GGFK
Sbjct: 190 GEGVEVDPDKIKAIADWPCPTNVREVRGFLGLTGYYRRFVQHYGSIAASLTQLLKKGGFK 249

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W+EEA EAF+K + AM+T+PVLALP F+ PFEIETDASGY +GAVLVQ+KRPI +YSHTL
Sbjct: 250 WNEEAEEAFLKLKTAMLTVPVLALPTFDHPFEIETDASGYGVGAVLVQSKRPIAFYSHTL 309

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           ++RDRA P+YE ELM VV+SVQRW  YLLG KFVVK +Q+S KFLLEQRV++PQY+KW+ 
Sbjct: 310 SMRDRAPPVYECELMVVVLSVQRWRPYLLGTKFVVKTNQKSFKFLLEQRVVQPQYQKWVS 369

Query: 301 KLLGYSVD 308
           KLLGYS +
Sbjct: 370 KLLGYSFE 377

[Close]

BLAST of Cucsat.G9312 vs. NCBI nr
Match: KAA0052233.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 479 bits (1233), Expect = 8.56e-159
Identity = 226/308 (73.38%), Postives = 267/308 (86.69%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +F+KIDLK GYHQIRM   D+EKTAFRTHEGHYEFLVM FGLTNAPATFQSLMN++F+PY
Sbjct: 70  LFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMSFGLTNAPATFQSLMNSIFRPY 129

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
           LRKFVLV FDDILIYS +   HL HM+IV  VLRK+EL+AN+KKCSF  +KV++LGH+IS
Sbjct: 130 LRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLIS 189

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
            KGVEVDPEKI+AI  WP PTNVRE RGFLGLT YYRKFV HYGT+AAPLTQLLK GGFK
Sbjct: 190 NKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGFK 249

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W++EA +AF K ++AM+ LP+LALP F+ P EIETDASGY +GAVL+QNKRPI +YSHTL
Sbjct: 250 WNDEAEQAFEKLKEAMIALPILALPMFDKPLEIETDASGYGIGAVLIQNKRPIAFYSHTL 309

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           A RDR +P+YERELM VV++VQRW  YLLG +FVV+ DQ+SLKFLLEQRV++PQY++W+ 
Sbjct: 310 ANRDRGRPVYERELMAVVLAVQRWRPYLLGNRFVVRTDQKSLKFLLEQRVVQPQYQRWLA 369

Query: 301 KLLGYSVD 308
           KLLGY+ D
Sbjct: 370 KLLGYTFD 377

[Close]

BLAST of Cucsat.G9312 vs. NCBI nr
Match: KAA0038243.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 471 bits (1213), Expect = 3.62e-156
Identity = 221/308 (71.75%), Postives = 267/308 (86.69%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +FSKIDLK GYHQIRM  ED+EKTAFRTHEGHYEF+VM FGLTNAP+TFQ+LMN VFKP+
Sbjct: 121 VFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPF 180

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
           LR+FVLV FDDILIYS  +  H  H+++VLE+LR++ELYAN  KC FAKS++ +LGH IS
Sbjct: 181 LRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILRESELYANFDKCHFAKSRISYLGHYIS 240

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
           +KG+EVDPEKIRA+K WP P NVRE+RGFLGLT YYR+FVQ+YG+I+APLTQLLK+G +K
Sbjct: 241 KKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYK 300

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W+EE   AF K ++AMMTLPVLA+PDFN PFEIE+DASG+ +GAVLVQ+KRP+ Y+S  L
Sbjct: 301 WTEETEAAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKRPVAYFSKVL 360

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           + RDRA+P+YERELM VV +VQRW  YLLG+KF VK DQRSLKFLLEQRVI+PQY++WI 
Sbjct: 361 STRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIA 420

Query: 301 KLLGYSVD 308
           KLLGYS +
Sbjct: 421 KLLGYSFE 428

[Close]

BLAST of Cucsat.G9312 vs. NCBI nr
Match: TYK11209.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 454 bits (1168), Expect = 4.78e-156
Identity = 213/308 (69.16%), Postives = 261/308 (84.74%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +FSKIDLK GYHQIRM  +D+ KTAFRTHEGHYEFLVM FGLTNAP TFQ+LMN +F+P+
Sbjct: 106 LFSKIDLKSGYHQIRMVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPF 165

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
            RKFVLV FDDILIYS +   H+ H++ V   LR++ L+ANKKKC+F + K+++LGHIIS
Sbjct: 166 FRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYLGHIIS 225

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
            +GVEVD EKI+A+  WP PTN++EV+GFLGLT YYR+FVQHYG+IAAPLTQLLK GGFK
Sbjct: 226 GEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 285

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W+EE+ +AF+K + AMM+LP LALP+   PFEIETDASG+ +GAVLVQ+KRPI +YSHT 
Sbjct: 286 WNEESEKAFLKLKSAMMSLPTLALPNVELPFEIETDASGFGVGAVLVQSKRPIAFYSHTF 345

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           ++RDR +P+YERELM VV+SVQRW  YLL  KF+VK DQ+SLKFLLEQRVI+PQYKKW+ 
Sbjct: 346 SMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLS 405

Query: 301 KLLGYSVD 308
           KLLGYS +
Sbjct: 406 KLLGYSFE 413

[Close]

BLAST of Cucsat.G9312 vs. ExPASy TrEMBL
Match: A0A5A7SV50 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00550 PE=4 SV=1)

HSP 1 Score: 461 bits (1187), Expect = 1.44e-160
Identity = 217/308 (70.45%), Postives = 265/308 (86.04%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +FSKIDLK GYHQIRM  +D+ KTAF THEGHYEFLVM FGLTNAPATFQ+LMN++F+P+
Sbjct: 63  VFSKIDLKSGYHQIRMIDKDIPKTAFHTHEGHYEFLVMPFGLTNAPATFQALMNSIFRPF 122

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
           LRKFVLV F+DILIYS +   H+ H++ V   LRK+ L+ANKKKC+F + KV++LGHIIS
Sbjct: 123 LRKFVLVFFNDILIYSKNEKDHIEHIEKVFLALRKHTLFANKKKCNFGQKKVEYLGHIIS 182

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
            +GVEVD EKI+ +  WP PTN+REVRGFLGLT YYR+FVQHYG+IAAPLTQLLK GGFK
Sbjct: 183 GEGVEVDSEKIKVVADWPCPTNIREVRGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 242

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W+E+A E+F K + AMM+LP LALP+F  PFEIETDASG+ +GAVL+Q+KRPI +YSHTL
Sbjct: 243 WNEDAEESFRKLKSAMMSLPTLALPNFTLPFEIETDASGFGVGAVLIQSKRPIAFYSHTL 302

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           ++RD+A+P+YERELM VV+SVQRW  YLLG KFVVK DQ+SLKFLLEQR+I+PQY+KW+ 
Sbjct: 303 SMRDKARPVYERELMAVVLSVQRWRPYLLGAKFVVKTDQKSLKFLLEQRIIQPQYQKWLS 362

Query: 301 KLLGYSVD 308
           KLLGYS +
Sbjct: 363 KLLGYSFE 370

[Close]

BLAST of Cucsat.G9312 vs. ExPASy TrEMBL
Match: A0A5A7TVZ8 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001510 PE=4 SV=1)

HSP 1 Score: 469 bits (1206), Expect = 2.56e-159
Identity = 225/308 (73.05%), Postives = 265/308 (86.04%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +FSKIDLK GYHQIRM  ED+ KT FRTHEGHYEFLVM FGLTNAPATFQ+LMNT+FKPY
Sbjct: 70  VFSKIDLKSGYHQIRMVDEDIPKTTFRTHEGHYEFLVMPFGLTNAPATFQALMNTIFKPY 129

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
           LRKFVLV FDDILIYS     H+ H++ V   LR++ L+ANKKKCSFA+ K+++LGH+IS
Sbjct: 130 LRKFVLVFFDDILIYSKYERDHVEHIEKVFLTLRRHALFANKKKCSFAQQKIEYLGHVIS 189

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
            +GVEVDP+KI+AI  WP PTNVREVRGFLGLT YYR+FVQHYG+IAA LTQLLK GGFK
Sbjct: 190 GEGVEVDPDKIKAIADWPCPTNVREVRGFLGLTGYYRRFVQHYGSIAASLTQLLKKGGFK 249

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W+EEA EAF+K + AM+T+PVLALP F+ PFEIETDASGY +GAVLVQ+KRPI +YSHTL
Sbjct: 250 WNEEAEEAFLKLKTAMLTVPVLALPTFDHPFEIETDASGYGVGAVLVQSKRPIAFYSHTL 309

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           ++RDRA P+YE ELM VV+SVQRW  YLLG KFVVK +Q+S KFLLEQRV++PQY+KW+ 
Sbjct: 310 SMRDRAPPVYECELMVVVLSVQRWRPYLLGTKFVVKTNQKSFKFLLEQRVVQPQYQKWVS 369

Query: 301 KLLGYSVD 308
           KLLGYS +
Sbjct: 370 KLLGYSFE 377

[Close]

BLAST of Cucsat.G9312 vs. ExPASy TrEMBL
Match: A0A5A7U8I6 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00460 PE=4 SV=1)

HSP 1 Score: 479 bits (1233), Expect = 4.14e-159
Identity = 226/308 (73.38%), Postives = 267/308 (86.69%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +F+KIDLK GYHQIRM   D+EKTAFRTHEGHYEFLVM FGLTNAPATFQSLMN++F+PY
Sbjct: 70  LFTKIDLKAGYHQIRMVDGDIEKTAFRTHEGHYEFLVMSFGLTNAPATFQSLMNSIFRPY 129

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
           LRKFVLV FDDILIYS +   HL HM+IV  VLRK+EL+AN+KKCSF  +KV++LGH+IS
Sbjct: 130 LRKFVLVFFDDILIYSRNWEDHLKHMEIVFLVLRKHELFANRKKCSFGLAKVEYLGHLIS 189

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
            KGVEVDPEKI+AI  WP PTNVRE RGFLGLT YYRKFV HYGT+AAPLTQLLK GGFK
Sbjct: 190 NKGVEVDPEKIKAITNWPKPTNVRETRGFLGLTGYYRKFVHHYGTLAAPLTQLLKKGGFK 249

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W++EA +AF K ++AM+ LP+LALP F+ P EIETDASGY +GAVL+QNKRPI +YSHTL
Sbjct: 250 WNDEAEQAFEKLKEAMIALPILALPMFDKPLEIETDASGYGIGAVLIQNKRPIAFYSHTL 309

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           A RDR +P+YERELM VV++VQRW  YLLG +FVV+ DQ+SLKFLLEQRV++PQY++W+ 
Sbjct: 310 ANRDRGRPVYERELMAVVLAVQRWRPYLLGNRFVVRTDQKSLKFLLEQRVVQPQYQRWLA 369

Query: 301 KLLGYSVD 308
           KLLGY+ D
Sbjct: 370 KLLGYTFD 377

[Close]

BLAST of Cucsat.G9312 vs. ExPASy TrEMBL
Match: A0A5A7T5N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00890 PE=4 SV=1)

HSP 1 Score: 471 bits (1213), Expect = 1.75e-156
Identity = 221/308 (71.75%), Postives = 267/308 (86.69%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +FSKIDLK GYHQIRM  ED+EKTAFRTHEGHYEF+VM FGLTNAP+TFQ+LMN VFKP+
Sbjct: 121 VFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQALMNQVFKPF 180

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
           LR+FVLV FDDILIYS  +  H  H+++VLE+LR++ELYAN  KC FAKS++ +LGH IS
Sbjct: 181 LRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILRESELYANFDKCHFAKSRISYLGHYIS 240

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
           +KG+EVDPEKIRA+K WP P NVRE+RGFLGLT YYR+FVQ+YG+I+APLTQLLK+G +K
Sbjct: 241 KKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLTQLLKSGAYK 300

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W+EE   AF K ++AMMTLPVLA+PDFN PFEIE+DASG+ +GAVLVQ+KRP+ Y+S  L
Sbjct: 301 WTEETEAAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKRPVAYFSKVL 360

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           + RDRA+P+YERELM VV +VQRW  YLLG+KF VK DQRSLKFLLEQRVI+PQY++WI 
Sbjct: 361 STRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIA 420

Query: 301 KLLGYSVD 308
           KLLGYS +
Sbjct: 421 KLLGYSFE 428

[Close]

BLAST of Cucsat.G9312 vs. ExPASy TrEMBL
Match: A0A5D3CLW4 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00530 PE=4 SV=1)

HSP 1 Score: 454 bits (1168), Expect = 2.32e-156
Identity = 213/308 (69.16%), Postives = 261/308 (84.74%), Query Frame = 0


Query: 1   MFSKIDLKVGYHQIRMSTEDVEKTAFRTHEGHYEFLVMLFGLTNAPATFQSLMNTVFKPY 60
           +FSKIDLK GYHQIRM  +D+ KTAFRTHEGHYEFLVM FGLTNAP TFQ+LMN +F+P+
Sbjct: 106 LFSKIDLKSGYHQIRMVDKDIPKTAFRTHEGHYEFLVMPFGLTNAPPTFQALMNNIFRPF 165

Query: 61  LRKFVLVSFDDILIYSSDLAAHLSHMKIVLEVLRKNELYANKKKCSFAKSKVDHLGHIIS 120
            RKFVLV FDDILIYS +   H+ H++ V   LR++ L+ANKKKC+F + K+++LGHIIS
Sbjct: 166 FRKFVLVFFDDILIYSKNEKDHVEHIEKVFLTLRRHALFANKKKCNFGQKKIEYLGHIIS 225

Query: 121 EKGVEVDPEKIRAIKAWPLPTNVREVRGFLGLTSYYRKFVQHYGTIAAPLTQLLKTGGFK 180
            +GVEVD EKI+A+  WP PTN++EV+GFLGLT YYR+FVQHYG+IAAPLTQLLK GGFK
Sbjct: 226 GEGVEVDSEKIKAVADWPCPTNIKEVQGFLGLTGYYRRFVQHYGSIAAPLTQLLKKGGFK 285

Query: 181 WSEEAHEAFVKFQQAMMTLPVLALPDFNAPFEIETDASGYRLGAVLVQNKRPIVYYSHTL 240
           W+EE+ +AF+K + AMM+LP LALP+   PFEIETDASG+ +GAVLVQ+KRPI +YSHT 
Sbjct: 286 WNEESEKAFLKLKSAMMSLPTLALPNVELPFEIETDASGFGVGAVLVQSKRPIAFYSHTF 345

Query: 241 AVRDRAKPIYERELMTVVMSVQRWHSYLLGQKFVVKIDQRSLKFLLEQRVIRPQYKKWIC 300
           ++RDR +P+YERELM VV+SVQRW  YLL  KF+VK DQ+SLKFLLEQRVI+PQYKKW+ 
Sbjct: 346 SMRDRVRPVYERELMAVVLSVQRWRPYLLRAKFIVKTDQKSLKFLLEQRVIQPQYKKWLS 405

Query: 301 KLLGYSVD 308
           KLLGYS +
Sbjct: 406 KLLGYSFE 413

The following BLAST results are available for this feature:

BLAST of Cucsat.G9312 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.1e-63	41.83	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.3e-63	40.78	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	8.7e-56	36.42	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	9.4e-50	35.37	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P0CT41	4.1e-45	35.86	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cucsat.G9312 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033035.1	2.97e-160	70.45	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa] >TYK03450.1 Transposon T...	[more]
KAA0047330.1	5.30e-159	73.05	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0052233.1	8.56e-159	73.38	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038243.1	3.62e-156	71.75	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK11209.1	4.78e-156	69.16	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G9312 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SV50	1.44e-160	70.45	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7TVZ8	2.56e-159	73.05	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7U8I6	4.14e-159	73.38	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T5N7	1.75e-156	71.75	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CLW4	2.32e-156	69.16	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001155	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	PFAM	PF00724	Oxidored_FMN	coord: 10..175 e-value: 7.8E-36 score: 124.0
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 2..176 e-value: 7.3E-63 score: 214.7
None	No IPR available	PANTHER	PTHR22893:SF102	12-OXOPHYTODIENOATE REDUCTASE 11-RELATED	coord: 10..175
None	No IPR available	PANTHER	PTHR22893	NADH OXIDOREDUCTASE-RELATED	coord: 10..175
None	No IPR available	SUPERFAMILY	51395	FMN-linked oxidoreductases	coord: 7..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G9312.T7	Cucsat.G9312.T7	mRNA
Cucsat.G9312.T2	Cucsat.G9312.T2	mRNA
Cucsat.G9312.T3	Cucsat.G9312.T3	mRNA
Cucsat.G9312.T1	Cucsat.G9312.T1	mRNA
Cucsat.G9312.T5	Cucsat.G9312.T5	mRNA
Cucsat.G9312.T6	Cucsat.G9312.T6	mRNA
Cucsat.G9312.T9	Cucsat.G9312.T9	mRNA
Cucsat.G9312.T4	Cucsat.G9312.T4	mRNA
Cucsat.G9312.T10	Cucsat.G9312.T10	mRNA
Cucsat.G9312.T8	Cucsat.G9312.T8	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005768	endosome
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0003824	catalytic activity