Cucsat.G9211 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G9211
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	mediator of RNA polymerase II transcription subunit 15a
Location	ctg1658: 1590288 .. 1593290 (+)
RNA-Seq Expression	Cucsat.G9211
Synteny	Cucsat.G9211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCATGAAGGGCATTTTGGTAAAATTGGCTCGTGTAAGTGTTTTGGGCAGGGAACGAAGCAAAGAAATAACATAAATAACTTTGTTTATCAATGGCTGGCTGACGCTGCTCACGAAGAAGACTAGAACGAACAGGTTTCTTTCTTGGTTTGCCTTCCACGCATGGAGATGCTTCTTGATCCACACAACACCCACACCCTCCCCTCTTCCACGGCTTGCTAAATCGCGCTCCCTGGCTAACAAGTTTTCGATGATTTATCTTCTTTAGGTTTCCGCTATTTCCAGATAATTTGACTCATCATTCTCTGTAATCAGCTCCAAAACAATTGCAGAATCCATTCATTGACCCCACCCAATTTCTGCCCGATTACTATCTCCACCGCCAATTTCTGACCTTCATTGATCCCACCCACCCCACTCCTTGTTATTGGGGTTTTGGACACACCCTTTTCCATTTTGGTTGTTTGGGAACTTTTGAATGGATAACAATAATTGGAGACCTACTCAAGCTGTAGAACCTGGAATGGAGACCGTGGATTGGAGGTCTCAATTGCAACCAGATTCTCGACAACGAATTGTCAACAAAATGTATGATTTCTTACATCCTGCTCTACTATTCTATCTTATTTAACATATGCCTTTGAGCTTATATAGCTCTTTGTTTCATAGTTCGTTGGTTAGATTACTCGGGAATGATTTCTTGAATTCTGTTTCTAAAACGTAATTTCTTGAAATTACACGTTATTGACTTTCCCATTCTTGGATTGAAGATATAGTAGGTTGGGTTTTGTGGGGAGGTTCTTTTTTGATTCTTCAGGTATTATCCTCTTCTTTAAAAAGAAGAAATGTAAGCTATTTGTAGAGGTGGGGATCTTGCTGAATTTGACTGGGCCATTTTAGAGTACGCTCCTCTAAAGTATCTAATACTTTGAATCATGGACATAGATTGCTATTGTAGTTTTCCTTTCAAGAACAACTTCTCATGCTTTTGCATTTAATATACTAGTTAGCCACTATGCTTTTATATTTTTATCTTTTTTTTTTTTGGTTAGAATGGAGACATTGAAGAGGCACCTTCCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGGAAAAGATTTTTACTGCCGCTACCAGTCAGGTATTCTTGCTCGCTTTGTTGTTGTTTAAATCAAGGATTGTCATTTATGTTTATCCCATATTCTATTAACAATAAGATACCGGTTTGATTTGCTACCTAAGTTTTAGTTGTGTAACGAACATACTCCTTTTTTTTCTTTGGGGCCTGACTTTCTTTTTTTGTGTGCCCATGTATATTCTTTCATTTCTCTCATTGAAATCCTGTTTGATCGTGTTATGTGTTCTTCCACCAAACACAACTTTGTTTTAGCAATCTCACCAATTTTATTTTTAATATCTTATTTCAGTCAGATTACCTAAGGAAAATATCTCTTAAGATGCTTACCATGGAAACGAAAACTCAGCCCCCTATGGGGAATTCATTACTAGTCAATATTGAAAATGAGTTGGGTAATTTTTTTTCCAACGAAGCTTTAAATATATCATTGTGTATATATTATACTTTGTAAATTAATTTGTTGTCTTCTTTTTAGGTCTTATAGAATATTCTGGTGAAGATGAAGCATCCACAATAACTTGTGTAGATGGTTGAAGAAGAATGGACGTTAAATGTGCAATTTATATGGGAATAAGGTTGGATGGATTTTAAATAGATACTTATAGTAAATAGTAATTAAGGTGATGGGCTCGTCACGAATCCATTCAACCTAGTGTGACTTTTTTTTTTTTTTGATAAGAGACAAGTATATTCATATAACAAAACAGAACAACCTAAGGGCGAGGGATGAGAGGGCCCTCCCCGGAAGAAGCTAAGGAACTAAGACATAATGGCCTTCCAATTGTTGAAAATCATAGAAAGGCTATAATTACAAAAATGTTTGGTGTAATTCGTACTCCACCAAGAGGCTGTGTGTTGAACCACAGTCCAAAAAGAATCAAAAGAATTAAATCTATCGTCAAAGATTCTGCTATTCCTTTCTTTCCAAATGCTCCACAAAAGGGAACGCGTCGCGCATTTCCATAAGATGTTTCCTTTAGGGCTGTAACCTCTAAAGTTAAGACCTTCAATCATCCATCTATCAATCTTGCTAGGAAGGCAAAGCTCCAGATCGAAAATACCAAACAGAGTGTACCAAGCTTTTCTTGTGAAGGGACAATGTAGAAATAAATGATCCAACGTTTCCTCATCTTTAGCGCATAGGCAACACATCGAGGGGCTAAGCAAAGTGTTCCGAATTTTTTTTTGTAGTTTCTCATGGGTGTTGAGGCTTCTGTAAGCAAGCGACCATAAGAAAAACTTCACCTTCTTCGGGATTTTATTCTTCCAAATCTGACGAATCAAGGGAACAGCAATGTTGGGAGATCTCTTAGTTAAGTTAAGAAAAGTAGATTTTGTAGTGAAGTTGCCATTTATGTTAGGAATCCATTTAAGACTATCATTCCTTTCAGTGGGGGCCCACGAGTGGAGAATTTCTAAAGCTGAGGCTGCATTGGCAATCTCGTTGTCGAGCATATTTCTTCTAAGGCCCAAATTCCAAGAATGAGTAGCAGTACACCAGCAATCAGCCACATAAGCTTCCTTATTCAGCGCCAAAGAGAATAAGTTAGGGAATTTTTCTGCAAGTGTTTCCGCGACACACCATTTATCCTTCCAAAATTTGATTTTTGTTCCTTCTCCCAAAACAAAAGCAGAAAAATTGAAGAATATCTCCTTATGCTTTAAAATACCAGCCCATAATCTATGAGATTTTCCCCTGTTTGGATTTTTGGTAGACCACCCATTCTCATCTAAACCATAGATGGCCACAATTAATCGCCTCCATAAAGAGGTTTCTTCCTTGCTAAACCTCCATAACCACTTAGTGAGAAGAGCAATATTCTTTTGCCTAAAAGAGCCAAT

Coding sequence (CDS)

ATGGATAACAATAATTGGAGACCTACTCAAGCTGTAGAACCTGGAATGGAGACCGTGGATTGGAGGTCTCAATTGCAACCAGATTCTCGACAACGAATTGTCAACAAAATAATGGAGACATTGAAGAGGCACCTTCCTGTTTCTGGTCAAGAGGGATTGAGTGAACTACGAAAAATTGCTGTAAGGTTTGAGGAAAAGATTTTTACTGCCGCTACCAGTCAGTCAGATTACCTAAGGAAAATATCTCTTAAGATGCTTACCATGGAAACGAAAACTCAGCCCCCTATGGGGAATTCATTACTAGTCAATATTGAAAATGAGTTGGGTCTTATAGAATATTCTGGTGAAGATGAAGCATCCACAATAACTTGTGTAGATGGTTGA

Protein sequence

MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIAVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGLIEYSGEDEASTITCVDG

Homology

[Close]

BLAST of Cucsat.G9211 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.6e-34
Identity = 72/107 (67.29%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MDNNNWRPT-QAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 60
           MDNNNWRP+    EP M+T DWR+QL PDSRQ+IVNKIMETLK+HLP SG EG++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIEN 107
           A RFEEKIF+ A +Q+DYLRKIS+KMLTMETK+Q   G+S  +   N
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSSAAIPAAN 107

[Close]

BLAST of Cucsat.G9211 vs. ExPASy Swiss-Prot
Match: Q9SHV7 (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana OX=3702 GN=MED15C PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-04
Identity = 23/76 (30.26%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 3  NNNWRPTQA---VEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 62
          N NW+P +     +     +DWRSQ +P+ RQ++++KI+E  K       +  +++   I
Sbjct: 4  NTNWKPNEQGGNRDAANNRIDWRSQHEPELRQKVLSKIVEKFKEKFHAHEEYKIND---I 63

Query: 63 AVRFEEKIFTAATSQS 76
          A +FEE  ++ AT ++
Sbjct: 64 ASKFEENFYSIATDKT 76

[Close]

BLAST of Cucsat.G9211 vs. NCBI nr
Match: XP_031744493.1 (mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis sativus] >KGN43730.2 hypothetical protein Csa_017280 [Cucumis sativus])

HSP 1 Score: 254 bits (650), Expect = 2.29e-85
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGLIEYSGEDEAS 120
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGLIEYSGEDEAS
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGLIEYSGEDEAS 120

Query: 121 TITCVDG 127
           TITCVDG
Sbjct: 121 TITCVDG 127

[Close]

BLAST of Cucsat.G9211 vs. NCBI nr
Match: XP_031744494.1 (mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis sativus])

HSP 1 Score: 244 bits (622), Expect = 3.87e-81
Identity = 124/127 (97.64%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGLIEYSGEDEAS 120
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENEL   EYSGEDEAS
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENEL---EYSGEDEAS 120

Query: 121 TITCVDG 127
           TITCVDG
Sbjct: 121 TITCVDG 124

[Close]

BLAST of Cucsat.G9211 vs. NCBI nr
Match: XP_031744496.1 (mediator of RNA polymerase II transcription subunit 15a isoform X4 [Cucumis sativus])

HSP 1 Score: 215 bits (548), Expect = 4.74e-70
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENEL 108
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENE+
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENEI 108

[Close]

BLAST of Cucsat.G9211 vs. NCBI nr
Match: XP_031744495.1 (mediator of RNA polymerase II transcription subunit 15a isoform X3 [Cucumis sativus])

HSP 1 Score: 214 bits (546), Expect = 1.06e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENE 107
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENE
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENE 107

[Close]

BLAST of Cucsat.G9211 vs. NCBI nr
Match: XP_031744491.1 (mediator of RNA polymerase II transcription subunit 15a [Cucumis sativus] >KAE8645791.1 hypothetical protein Csa_017181 [Cucumis sativus])

HSP 1 Score: 200 bits (508), Expect = 1.59e-56
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 103
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGN L  N
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNPLPSN 103

[Close]

BLAST of Cucsat.G9211 vs. ExPASy TrEMBL
Match: A0A392M5V1 (Mediator of RNA polymerase II transcription subunit 15A-like (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0003604 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 1.48e-52
Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRP Q  EP M+T DWR QLQP+SRQRIVNKIM+TLKRHLPVSGQEGL ELRKIA
Sbjct: 5   MDNNNWRPNQGAEPNMDTSDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 64

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVNIENELGLIEYS 114
            RFEEKIFTAATSQSDYLRKISLKMLTMETK+Q  M N++  N   + GL+  S
Sbjct: 65  QRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGTMANNIPPNQPPDPGLVMQS 118

[Close]

BLAST of Cucsat.G9211 vs. ExPASy TrEMBL
Match: A0A2Z6M775 (KIX_2 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_114110 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 3.37e-52
Identity = 84/103 (81.55%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MDNNNWRP Q  EP M+T DWR QLQP+SRQRIVNKIM+TLKRHLPVSGQEGL ELRKIA
Sbjct: 1   MDNNNWRPNQGAEPNMDTGDWRGQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 103
            RFEEKIFTAATSQSDYLRKISLKMLTMETK+Q  M N++  N
Sbjct: 61  QRFEEKIFTAATSQSDYLRKISLKMLTMETKSQGTMANNIPPN 103

[Close]

BLAST of Cucsat.G9211 vs. ExPASy TrEMBL
Match: A0A5D3C6P8 (Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002870 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 6.51e-51
Identity = 93/103 (90.29%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRPTQ  EPGME  DWRSQLQPDSR RIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 103
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQP MGN L  N
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSN 103

[Close]

BLAST of Cucsat.G9211 vs. ExPASy TrEMBL
Match: A0A1S3C0H1 (mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 GN=LOC103495458 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 6.51e-51
Identity = 93/103 (90.29%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRPTQ  EPGME  DWRSQLQPDSR RIVNKIMETLKRHLPVSGQEGLSELRKIA
Sbjct: 1   MDANNWRPTQGGEPGMEAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGQEGLSELRKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 103
           VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQP MGN L  N
Sbjct: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPTMGNPLPSN 103

[Close]

BLAST of Cucsat.G9211 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 3.67e-49
Identity = 89/103 (86.41%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 1   MDNNNWRPTQAVEPGMETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKIA 60
           MD NNWRPTQ  EPG+E  DWRSQLQPDSRQRIVNKIMETLKRHLPVSG EGLSEL+KIA
Sbjct: 1   MDTNNWRPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKKIA 60

Query: 61  VRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNSLLVN 103
           VRFEEKI+TAATSQSDYLRKISLKMLTMETK+Q PMG SL  N
Sbjct: 61  VRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSN 103

The following BLAST results are available for this feature:

BLAST of Cucsat.G9211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	6.6e-34	67.29	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]
Q9SHV7	2.4e-04	30.26	Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ...	[more]

BLAST of Cucsat.G9211 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744493.1	2.29e-85	100.00	mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis sati...	[more]
XP_031744494.1	3.87e-81	97.64	mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis sati...	[more]
XP_031744496.1	4.74e-70	99.07	mediator of RNA polymerase II transcription subunit 15a isoform X4 [Cucumis sati...	[more]
XP_031744495.1	1.06e-69	100.00	mediator of RNA polymerase II transcription subunit 15a isoform X3 [Cucumis sati...	[more]
XP_031744491.1	1.59e-56	97.09	mediator of RNA polymerase II transcription subunit 15a [Cucumis sativus] >KAE86...	[more]

BLAST of Cucsat.G9211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A392M5V1	1.48e-52	76.32	Mediator of RNA polymerase II transcription subunit 15A-like (Fragment) OS=Trifo...	[more]
A0A2Z6M775	3.37e-52	81.55	KIX_2 domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_114110...	[more]
A0A5D3C6P8	6.51e-51	90.29	Mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo var. mak...	[more]
A0A1S3C0H1	6.51e-51	90.29	mediator of RNA polymerase II transcription subunit 15a OS=Cucumis melo OX=3656 ...	[more]
A0A6J1HI15	3.67e-49	86.41	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036546	Mediator complex subunit 15, KIX domain	PFAM	PF16987	KIX_2	coord: 19..98 e-value: 1.7E-38 score: 130.5
IPR036529	Coactivator CBP, KIX domain superfamily	GENE3D	1.10.246.20	Coactivator CBP, KIX domain	coord: 19..96 e-value: 6.7E-25 score: 89.0
IPR036529	Coactivator CBP, KIX domain superfamily	SUPERFAMILY	47040	Kix domain of CBP (creb binding protein)	coord: 20..94
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 1..103
None	No IPR available	PANTHER	PTHR33137:SF27	OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G9211.T1	Cucsat.G9211.T1	mRNA
Cucsat.G9211.T6	Cucsat.G9211.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity