Cucsat.G8524 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G8524
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Protein of unknown function (DUF3317)
Location	ctg1557: 3611438 .. 3614497 (-)
RNA-Seq Expression	Cucsat.G8524
Synteny	Cucsat.G8524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGGGTAGTTTTGTAATTCTACGTAGACTGTTTTTTAATTACTTTCCATCCACCGCGAAAGGAAGAAGCTTTTGTTTATCTGAAGCTTCAAGGCAGAGCTCTCGAATCAAGCCTTCATCAATTCTCATCTCTATCTGTTGCATGAAAGGTAAGACGAATCAGATCACAGAAACATTTTTAATTTGATAATTTCTTGTTGAACTTCATCTTTGGTCTTTCTAATCTGTCGGGACTTCACCATTTTCTGCTTGATTCCTCCCCTAATTCAAGCAAAAGCGAGTATTTCTCCTTCTCTGTAATGACTTATGCAGCGAACGAGCGAAAAAACGCTTCAAAAACTCATTTTCTGATTCCATTTCCTTCAATGGAAAATGGGGTTTTTCTTCTTTTGAACATTTATGGAACCGGTTCTGTTTCAGAGCTATTAGTTTTCGTGTTTATGGGTTTTTAGATCTGTGTTTGCTTATAGAATTTGACTTTGAAGGAATCCGGAAATAGGAATTTGGGATCCCCCCTTGTGATAAAATTTTACGTTCACTGCTATTTGGCGAAGCTTGATCGGAAGGTTTGGCAGTAAAGCATAGCCTTTCTGATTGATAAACACATCACCTATTGAAGTTTGACTGTACATTATATTTCGAAGTTTCTTTGTTAAACTGCCATACTTATTGATTCATCATCCATTTCCTCATATTTCTATGACCTGAAAATTTTGAATGGTTTTGACTTGGGTGGTTGCTTCTTGCTTGTAGGTTTTCTATAGCCATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAGTATGCTCTCTATCCCAAGGGATATTTGATCTGTTTTATCATTTGCAAGCATGCGTAGTACGTGTTTCAGATAAAGTTATGCCGCCAGTATCTTGTCCAGCCAAATAATTACTGATATTTACTATTTCTTTTGTTGATATTAAGATTTAATATTGATTTTTCATTATTCGAGTTATGTCCTGCTCTGTGGATGATGGATATATGGCTATATGTTATATAATTTTCAATCATGCTTGTTCGGTGTGTCAGTATCTTATGTTAACTGGATTTAGGATTTGTCTAGTTAGATGTTGAATTTCATTGGTTCAATAATTTCTGTGAGATTGAATTTAATTTGTGCAACTCTTTTCTTTTTCTTACTATTGACCTCTTGAATTCTTCAAATATTATTGTAGATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATTGTATTTATCTTTACTCTACCATTTCCTTTTCACAATCGGGAAATAAAATATATATTACAATTGATTGCACATATTGCAGTAGACATTTGATACTCCAACCACCAAAGAAAATATTGTTCCTCTATTTTCATGTGACCTTAGTCCAGCAAAATAAAAACAGTGGTTACATATTTGTTCTTCTTTCTGATTTAATTATAACTGTTTAGACCATTAATTTATAAAAATGCAACATAAAGGGGGAGAATCTAACTCCAAAGGAATCAGAGTAACACAACAGCTCGAAGTACTTTAATTGAGGGATGAGGAGAGGATAGCTAGAGAGCTCTCTGGAGGGGAAGCTCCAAGAGTAGAATAGCAAAACAGTGTCGCCCCATCTTATAGGGTTCATTTCTTTCATTTGTCCTATAAGGATCTCCTGTTATTTGTAACCAACTTTCTGAATAAATAGCCTTATAGTTTCTGAAGATTTATGTTTGGCCAATCCAACCACAAGTTAAAGAACTACATCTTGGAGCAAAATTATGCTATAACGGTCAGGTAGTTTTTTAGTTGGGAACGTCCTCAAAGACAAGAAGGGAAAAAATTATTTTAGTTATCTAAATCTCCTCTCTTATTGAAAAGGATATTTAGTCTTAGGATGTATTTAGGATTTTTTCTCAAGTAATGACTTTTGGAATGGATGAAAAATTATTTGGATGATTGGTTCTATACTATGCGATGGTTTCTTACATAGCACTTTAAGGTGCTTATATATATTATATATGTATATATTTGGATAAGAGACGGGTATATTCAGAAGAACAAAGTAGAACAGCCTAAGGGTAAGGAATGAGAGGGCCCTCTCCAAGAAAGACTATAGATAAGAGTTCCAATTGTTAAAAATTATAGAAAGGCTATAATTACAAAAGTGTTTGGTGTAGTTGGTACTCCACGAAGAAGCTGTGTGTTGAACCACAGTAAAAAAGAATCAAAAGAATTATATTTATCTTAAAAAATTATTCTATTTCTCTCATTCCAATTGCACCACAATAGGGATCAAGTAGCACATCACCACAGAATGTTACCCTTCGGGCAAAAAACTTTGCTGTTGAGCCCTTCATGCATCCAACTATCAATGTTGCTAGGAAGACAAAAATCCAGATTGAAAATTCTGAACAACATAGACCAGCCTTTCAAAACGAAGTCACAAAGGAATACAAAGGCAGCACATAGAAGGGCTGAGAGCAAAGTACCGAAACTTTCTTTGGAGCTTTTCATGAAAAATTATAGAAAGGCTATAATTACGAAATTGTTTGGTTAGGTGCTATGTTTTTTTTAAAACGTGAATTTTTTTAAAAGACAGTTGCCAAAGATACTCTCGAGGATGGCCTTCATCACACATTGCTCCAATTATCGTTTGTTATTCTTACAAAACACTCTCAAGGCTATCATTTATTATGCTTTTACTTGTGCAAATCTTTATCTCCTCTGAGTCTAATTAACAGTGACAGAGTGACATTATGGTCATTGGCAACATGAAACCCTTTTTATGTTTTAAATCATAAGCCAATCAAGAACTTGATTTTCATACAATCAAAATTCATTTAGATGGTTTAAGTCATGTTTCGGAATGATTTTAAACACAATTTTAACCATTTCATAATCACTCCCAAACTTTCAACACATTGTAGATATTAATTAGTTCTGTCAGTTTTTCTTCTTTATCGTTTCATATGCAGATGTTGTAATTGATTTCTGTTCTGTTTTTGTTATCTAATGCCATACCAACCAGATTGCACTGTTAAACCTTTTGTTTCTTATATATCTTCCTCCCATCACTTGCTTCTCAGGTATCTGTGGCAAGCCAAGGCGTAGGAGAAGTCAATTTGGATGCAATTTTGCA

Coding sequence (CDS)

ATGAATTGGATACAAAGGAAGATCTACCTTTATAATGTCACATTTGGGTTGTACATGTTGGATTGGTGGGAGCGTATCCTCTTCAATACAATGGTGGTTGTGCTGATGTGGTTCATGTTTTACAATGGGTCACGATACGTGAATGATATGTGCAAGAGGTATTGTATTTATCTTTACTCTACCATTTCCTTTTCACAATCGGGAAATAAAATATATATTACAATTGATTGCACATATTGCAGTAGACATTTGATACTCCAACCACCAAAGAAAATATTGTTCCTCTATTTTCATGTGACCTTAGTCCAGCAAAATAAAAACAGTGGTTACATATTTGTTCTTCTTTCTGATTTAATTATAACTGTTTAG

Protein sequence

MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYCIYLYSTISFSQSGNKIYITIDCTYCSRHLILQPPKKILFLYFHVTLVQQNKNSGYIFVLLSDLIITV

Homology

[Close]

BLAST of Cucsat.G8524 vs. NCBI nr
Match: KAG7016096.1 (hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (322), Expect = 3.18e-36
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRYCIYLYS 60
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KRYC+YL S
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRYCVYLCS 60

Query: 61 TISFSQSGN 69
          T S S+S N
Sbjct: 61 TFSSSKSEN 69

[Close]

BLAST of Cucsat.G8524 vs. NCBI nr
Match: XP_004141475.1 (uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetical protein Csa_008788 [Cucumis sativus])

HSP 1 Score: 118 bits (295), Expect = 3.23e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

[Close]

BLAST of Cucsat.G8524 vs. NCBI nr
Match: XP_008459402.1 (PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_016902393.1 PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo])

HSP 1 Score: 118 bits (295), Expect = 3.23e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

[Close]

BLAST of Cucsat.G8524 vs. NCBI nr
Match: XP_038889912.1 (uncharacterized protein LOC120079682 [Benincasa hispida])

HSP 1 Score: 114 bits (284), Expect = 1.53e-30
Identity = 51/54 (94.44%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+CKR+
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLCKRH 54

[Close]

BLAST of Cucsat.G8524 vs. NCBI nr
Match: XP_022134536.1 (uncharacterized protein LOC111006754 [Momordica charantia])

HSP 1 Score: 112 bits (279), Expect = 7.39e-30
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKR 53
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGS+YVND+CKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

[Close]

BLAST of Cucsat.G8524 vs. ExPASy TrEMBL
Match: A0A1S3C9L1 (uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 1.56e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54

[Close]

BLAST of Cucsat.G8524 vs. ExPASy TrEMBL
Match: A0A6J1BY20 (uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006754 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 3.58e-30
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKR 53
          MNWIQRKIYLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGS+YVND+CKR
Sbjct: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSQYVNDLCKR 53

[Close]

BLAST of Cucsat.G8524 vs. ExPASy TrEMBL
Match: A0A6J1JYU1 (uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 4.96e-29
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 54

[Close]

BLAST of Cucsat.G8524 vs. ExPASy TrEMBL
Match: A0A6J1FLX2 (uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC111445419 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 4.96e-29
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNWIQRK+YLYNVTFGLYMLDWWERILFNT+VVVLMWFMFYNGSRYVND+ KR+
Sbjct: 1  MNWIQRKVYLYNVTFGLYMLDWWERILFNTLVVVLMWFMFYNGSRYVNDLYKRH 54

[Close]

BLAST of Cucsat.G8524 vs. ExPASy TrEMBL
Match: A0A6P5SRN0 (uncharacterized protein LOC110758739 OS=Prunus avium OX=42229 GN=LOC110758739 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.49e-27
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MNWIQRKIYLYNVTFGLYMLDWWERILFNTMVVVLMWFMFYNGSRYVNDMCKRY 54
          MNW+QRKIYLYNVTFGLYMLDWWER LFNT+VVVLMWF+FYNGSRYV + CKR+
Sbjct: 1  MNWVQRKIYLYNVTFGLYMLDWWERYLFNTLVVVLMWFIFYNGSRYVTEFCKRH 54

The following BLAST results are available for this feature:

BLAST of Cucsat.G8524 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G8524 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016096.1	3.18e-36	85.51	hypothetical protein SDJN02_21200, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004141475.1	3.23e-32	100.00	uncharacterized protein LOC101207494 [Cucumis sativus] >KAE8648948.1 hypothetica...	[more]
XP_008459402.1	3.23e-32	100.00	PREDICTED: uncharacterized protein LOC103498548 [Cucumis melo] >XP_008459403.1 P...	[more]
XP_038889912.1	1.53e-30	94.44	uncharacterized protein LOC120079682 [Benincasa hispida]	[more]
XP_022134536.1	7.39e-30	94.34	uncharacterized protein LOC111006754 [Momordica charantia]	[more]

BLAST of Cucsat.G8524 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9L1	1.56e-32	100.00	uncharacterized protein LOC103498548 OS=Cucumis melo OX=3656 GN=LOC103498548 PE=...	[more]
A0A6J1BY20	3.58e-30	94.34	uncharacterized protein LOC111006754 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JYU1	4.96e-29	90.74	uncharacterized protein LOC111489112 OS=Cucurbita maxima OX=3661 GN=LOC111489112...	[more]
A0A6J1FLX2	4.96e-29	90.74	uncharacterized protein LOC111445419 OS=Cucurbita moschata OX=3662 GN=LOC1114454...	[more]
A0A6P5SRN0	1.49e-27	85.19	uncharacterized protein LOC110758739 OS=Prunus avium OX=42229 GN=LOC110758739 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024512	Small subunit of serine palmitoyltransferase-like	PFAM	PF11779	SPT_ssu-like	coord: 1..51 e-value: 1.2E-23 score: 82.4
None	No IPR available	PANTHER	PTHR33727	OS07G0446900 PROTEIN	coord: 1..53
None	No IPR available	PANTHER	PTHR33727:SF18	PROTEIN, PUTATIVE (DUF3317)-RELATED	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G8524.T11	Cucsat.G8524.T11	mRNA
Cucsat.G8524.T14	Cucsat.G8524.T14	mRNA
Cucsat.G8524.T13	Cucsat.G8524.T13	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane