Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGTTGGCGCCTATATACATTCAAATTCAAACCCTAAAAACACAAAATTCCAAATCCTTCAGGAAAGGAAAAACCCCTTTTTTTTCCATTCTTCTCTTTTTCTATGATTCCATTTCTTCACTTTCAAACCAATTTCTCCATCTCCACTTCACACCAATATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAACCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGGTAAAATTGCTGAACGTTTTTTTTTTCTTTGGTTAGTTTGAAGTTTTGATTCGTGTTTCATTTGCTGATATTTCTTTTTATGATTTAAATCAGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGTACGTTCTGATCTAGAATCTTCAAAGCTTATTTCTCGATTCATCTTGTGAAATCAATCCACAATCCACTGATTTGTTTCAGGAATTTGAAATCGGCGATGGAGAAGAATCTGTCGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAAGAGGTTTTTGAAATCGATTCTAAAGTTTAGTGGATTTGCCCTAATTTTCCGATCATTACTACATCTTGTACGGGTTTTCAAAAGTAGAAATTAGAAAAGGAAATGGATGTAATACCTCATTATGATTTTCTTTATGCATTGATGGAAGCTTTTGAGTTGTTGTAATCAATGTGATTCTTCCTCCATCTTCTTCTTCTTCTTTTTCTTCACTTCAATTAATGTTGGAAAGTGAAGAAATTCCAAATCGTGTTCGTGAATTTTTCTCTCGCCCCTCTATAATCTTCATGATATGTAATGAATTTTGTGAGTGAGAGTTTAGGGGTATCGATTGATTCAATTCATC
Coding sequence (CDS)
ATGCAAACTCTCCACCATCCCTTACCCCCTCCTCGAGATCTTCCTCTCAAGTCTGGCCGCCGCCCACTCCAGCCAAAGAATTCTCTGCCAAATCCTGTCCCTTCCGTTGCCAAAATCATCAAATCCAAACCGGAAATCATCCAGATCTCCCTCTCCGGCGACGCCAATAAGGAAAATCATCCGCCGCCAACAACGGTGAGTATTGAGTCATGTGATTTGTCTCTGGCGGATGAACTGAATGCGGTTAAGAGGAAAATGGAGAGATTGAGATTGGACGGTGAACGAACGGAGAAGATGTTGAGAGAGAGGGATTTGGTTTTGGAGTTACGGATGAAGGAACTGTTACAGAGAAGTCAGGAACAGAGAGATCTGGAAATGGAAGTCGATAGGTTATTTAGATTGAAGGAACTTAGATCGTACTGTATGAGGATTTCTCCGATTCGAAGTCTCAGAGAGAAAGAACGAGAAAAGATTTTCACCGATGCACAATTTCCGGAATTTGAAATCGGCGATGGAGAAGAATCTGTCGGCGAAAACTCCTCGTTGGATTCTTCAGAATTCGTAAGAGGTTTTTGA
Protein sequence
MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENHPPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGENSSLDSSEFVRGF
Homology
BLAST of Cucsat.G7897 vs. NCBI nr
Match:
XP_004142680.1 (high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical protein Csa_012022 [Cucumis sativus])
HSP 1 Score: 268 bits (685), Expect = 2.68e-89
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 121 QRDLEMEVDRLFRLKELRSYCM 142
QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142
BLAST of Cucsat.G7897 vs. NCBI nr
Match:
KAA0025412.1 (high mobility group B protein 6 [Cucumis melo var. makuwa])
HSP 1 Score: 261 bits (667), Expect = 1.48e-86
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 121 QRDLEMEVDRLFRLKELRSYCM 142
QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142
BLAST of Cucsat.G7897 vs. NCBI nr
Match:
XP_008463266.1 (PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobility group B protein 6 [Cucumis melo var. makuwa])
HSP 1 Score: 257 bits (657), Expect = 4.92e-85
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 121 QRDLEMEVDRLFRLKELRSYCM 142
QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142
BLAST of Cucsat.G7897 vs. NCBI nr
Match:
XP_038883293.1 (uncharacterized protein LOC120074285 [Benincasa hispida])
HSP 1 Score: 234 bits (597), Expect = 8.20e-76
Identity = 130/148 (87.84%), Postives = 133/148 (89.86%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQTLHHPL P+DLPLKSGRRPLQPKNSLPN PSVAK IKSKPE IQISLSGDANKENH
Sbjct: 1 MQTLHHPLATPQDLPLKSGRRPLQPKNSLPNSGPSVAKFIKSKPERIQISLSGDANKENH 60
Query: 61 PP------PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKEL 120
PP TT SIESCD SLADELNAVKRK+ERLRLDGERTE+MLRERDLVLELRMKEL
Sbjct: 61 PPIHATATTTTASIESCDSSLADELNAVKRKLERLRLDGERTEQMLRERDLVLELRMKEL 120
Query: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCM 142
LQRSQEQRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 LQRSQEQRDLEMEVDRLFRLKELRSYCM 148
BLAST of Cucsat.G7897 vs. NCBI nr
Match:
XP_022978293.1 (high mobility group B protein 13-like [Cucurbita maxima])
HSP 1 Score: 218 bits (555), Expect = 1.76e-69
Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQ LH PL P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL DANKENH
Sbjct: 1 MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60
Query: 61 PP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120
PP S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+ML+ERD++LELRMKELLQRS
Sbjct: 61 PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120
Query: 121 QEQRDLEMEVDRLFRLKELRSYCM 142
+EQRDLEMEVDRLFRLKELR YCM
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCM 144
BLAST of Cucsat.G7897 vs. ExPASy TrEMBL
Match:
A0A0A0L063 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1)
HSP 1 Score: 268 bits (685), Expect = 1.30e-89
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 121 QRDLEMEVDRLFRLKELRSYCM 142
QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142
BLAST of Cucsat.G7897 vs. ExPASy TrEMBL
Match:
A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)
HSP 1 Score: 261 bits (667), Expect = 7.15e-87
Identity = 139/142 (97.89%), Postives = 140/142 (98.59%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQTLHHPLP PRD+PLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 121 QRDLEMEVDRLFRLKELRSYCM 142
QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142
BLAST of Cucsat.G7897 vs. ExPASy TrEMBL
Match:
A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)
HSP 1 Score: 257 bits (657), Expect = 2.38e-85
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 121 QRDLEMEVDRLFRLKELRSYCM 142
QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142
BLAST of Cucsat.G7897 vs. ExPASy TrEMBL
Match:
A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)
HSP 1 Score: 257 bits (657), Expect = 2.38e-85
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQTLHHPLP PRD+PLKSGRRPLQPKNSLPN VPSVAKIIKSKPEIIQISLSGDANKENH
Sbjct: 1 MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60
Query: 61 PPPTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
PP TTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE
Sbjct: 61 PPATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRSQE 120
Query: 121 QRDLEMEVDRLFRLKELRSYCM 142
QRDLEMEVDRLFRLKELRSYCM
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCM 142
BLAST of Cucsat.G7897 vs. ExPASy TrEMBL
Match:
A0A6J1ISM0 (high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC111478322 PE=4 SV=1)
HSP 1 Score: 218 bits (555), Expect = 8.54e-70
Identity = 118/144 (81.94%), Postives = 128/144 (88.89%), Query Frame = 0
Query: 1 MQTLHHPLPPPRDLPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60
MQ LH PL P DLPLKSGRRPLQPKNSLPNPVP+VAK+IKSKPE IQISL DANKENH
Sbjct: 1 MQALHQPLATPHDLPLKSGRRPLQPKNSLPNPVPAVAKVIKSKPERIQISLPTDANKENH 60
Query: 61 PP--PTTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120
PP S+ESCDLSLADELNAVKRK+ERLRL+ ERTE+ML+ERD++LELRMKELLQRS
Sbjct: 61 PPIHAKAASVESCDLSLADELNAVKRKLERLRLERERTEQMLKERDMILELRMKELLQRS 120
Query: 121 QEQRDLEMEVDRLFRLKELRSYCM 142
+EQRDLEMEVDRLFRLKELR YCM
Sbjct: 121 KEQRDLEMEVDRLFRLKELRLYCM 144
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_004142680.1 | 2.68e-89 | 100.00 | high mobility group B protein 6 [Cucumis sativus] >KGN54454.1 hypothetical prote... | [more] |
| KAA0025412.1 | 1.48e-86 | 97.89 | high mobility group B protein 6 [Cucumis melo var. makuwa] | [more] |
| XP_008463266.1 | 4.92e-85 | 97.18 | PREDICTED: high mobility group B protein 6 [Cucumis melo] >TYK09760.1 high mobil... | [more] |
| XP_038883293.1 | 8.20e-76 | 87.84 | uncharacterized protein LOC120074285 [Benincasa hispida] | [more] |
| XP_022978293.1 | 1.76e-69 | 81.94 | high mobility group B protein 13-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L063 | 1.30e-89 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G334650 PE=4 SV=1 | [more] |
| A0A5A7SJQ2 | 7.15e-87 | 97.89 | High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
| A0A5D3CEI7 | 2.38e-85 | 97.18 | High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A1S3CJ78 | 2.38e-85 | 97.18 | high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=... | [more] |
| A0A6J1ISM0 | 8.54e-70 | 81.94 | high mobility group B protein 13-like OS=Cucurbita maxima OX=3661 GN=LOC11147832... | [more] |
