Cucsat.G7559 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G7559
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Histone H2A
Location	ctg1528: 4628658 .. 4629968 (+)
RNA-Seq Expression	Cucsat.G7559
Synteny	Cucsat.G7559

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCATCCTATATATACCAAAACCCTCACTCCTCACCTTCCAATCTCATTCTCAAACCTTCATCGCTCTCCAAAAACCCCAACTTAGGGTTCCTGATTTTCATCTTTTTCTCTCAAAGTCCCTCGAATTTTCCCGATTCGACGATGAGTTCCACTGGCGGTTCCACCAAAGGCGGTAGAGGAAAGCCCAAAGCTACCAAATCCGTTTCCCGATCGCACAAAGCCGGACTCCAGTTCCCCGTTGGTAGAATCGCAAGGTTTCTCAAGGCTGGTAAATACGCTGAACGTGTCGGCGCTGGTGCTCCGGTCTACTTATCTGCCGTCCTTGAATATCTCGCTGCTGAGGTAACAATCAATGTCCACACTGGTTTTGATTGAATTCTTTTTTGATCATGTTCGATGGATCTTTATTTTTTGTTTTTGTTGATTTCAATTGGGATTAGGTTTTGGAGCTTGCTGGTAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGACATATTCAGCTTGCTGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACAATTGCTAATGGTGGTGTTTTACCTAATATTCACCAGACTCTTTTGCCTAAAAAGGTTGGTAAAGATAAGGGTGATATTGGTTCTGCATCACAAGAATTCTAGAGGTTTTAGGGTTTTTTTTTGGGTAAGGTTTGTTTCATTACTAGAGATGACAATGTTTTGATATGTGAAAATGGATGTGTGGTTTTGCATCTATGACATTCGCTTCCTCTTTTGTACTTTGTCATCTTGATTTTGTTTAGATGCATATATTTTATATCAATATGGGGTTGTTGGTGGATTTGATTCAAGAATGATGATGACCAACTCCTTTTTACAGTTAGAAGTTCAATGAAATGACTTTCTTGTTGAAAGATTTCAATTTTGATTGAAGTTCCACGAAGTTTGTACTTCGAAAGCTTTGTCTCATCTCTCTGATCTCTGTTTATTGAATTTTGTTTGGCAATTGTTATGATTCTAAATACTGTGAATCATGTCTTAGAATATGAATGGTAAGTAATGTGTCAATATTGTAGGTAACAATATTATTGTTCATTATGAATGATAAGACAAAAGGCAATGAGGAATTTATAAGGAAAATATGTTTAATTTCTTCCTCGAGATTTTCCTATTGCCTAATTTCATGAAGTTAAAGGCTGTGCTTTTGTATGAAAGATCAAAACTAGCTTATATTGTTGCAATAGAGGGAAAAATAATACAAATATAGGTTTATCCTAATCAAAACCCTTTTTTTTTTGGGTTTATGTT

Coding sequence (CDS)

CTCTCATCCTATATATACCAAAACCCTCACTCCTCACCTTCCAATCTCATTCTCAAACCTTCATCGCTCTCCAAAAACCCCAACTTAGGGTTCCTGATTTTCATCTTTTTCTCTCAAAGTCCCTCGAATTTTCCCGATTCGACGATGAGTTCCACTGGCGGTTCCACCAAAGGCGGTAGAGGAAAGCCCAAAGCTACCAAATCCGTTTCCCGATCGCACAAAGCCGGACTCCAGTTCCCCGTTGGTAGAATCGCAAGGTTTCTCAAGGCTGGTAAATACGCTGAACGTGTCGGCGCTGGTGCTCCGGTCTACTTATCTGCCGTCCTTGAATATCTCGCTGCTGAGGTTTTGGAGCTTGCTGGTAATGCTGCTAGAGACAACAAGAAGAATCGTATTGTGCCGAGACATATTCAGCTTGCTGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACAATTGCTAATGGTGGTGTTTTACCTAATATTCACCAGACTCTTTTGCCTAAAAAGGTTGGTAAAGATAAGGGTGATATTGGTTCTGCATCACAAGAATTCTAG

Protein sequence

LSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQSPSNFPDSTMSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

[Close]

BLAST of Cucsat.G7559 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-65
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 49  MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 108
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 109 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 168
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 169 QTLLPKKVGKDKGDIGSASQEF 189
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cucsat.G7559 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.8e-65
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 51  STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 110
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 111 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 170
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 171 TLLPKKVGKDKGDIGSASQEF 189
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cucsat.G7559 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 6.2e-65
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSST  +TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 189
           LLPKKVGK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Cucsat.G7559 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.5e-63
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSS+G   KGGRGK K+TKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AV
Sbjct: 1   MSSSG--AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 169 LLPKKVGKDKGDIGSASQEF 189
           LLPKK GKDKG+IGSASQEF
Sbjct: 121 LLPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of Cucsat.G7559 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-61
Identity = 126/140 (90.00%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSS GG   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGG--GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 189
           LLPKK GKDK DIGSASQEF
Sbjct: 121 LLPKKGGKDKADIGSASQEF 138

[Close]

BLAST of Cucsat.G7559 vs. NCBI nr
Match: KAE8653389.1 (hypothetical protein Csa_007458 [Cucumis sativus])

HSP 1 Score: 362 bits (930), Expect = 9.55e-126
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   LSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQSPSNFPDSTMSSTGGSTKGGR 60
           LSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQSPSNFPDSTMSSTGGSTKGGR
Sbjct: 22  LSSYIYQNPHSSPSNLILKPSSLSKNPNLGFLIFIFFSQSPSNFPDSTMSSTGGSTKGGR 81

Query: 61  GKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELA 120
           GKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELA
Sbjct: 82  GKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELA 141

Query: 121 GNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGD 180
           GNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGD
Sbjct: 142 GNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGD 201

Query: 181 IGSASQEF 188
           IGSASQEF
Sbjct: 202 IGSASQEF 209

[Close]

BLAST of Cucsat.G7559 vs. NCBI nr
Match: XP_004135645.1 (histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis melo])

HSP 1 Score: 269 bits (688), Expect = 6.66e-90
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Cucsat.G7559 vs. NCBI nr
Match: TYK10200.1 (histone H2AX [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (688), Expect = 1.00e-89
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Cucsat.G7559 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 267 bits (683), Expect = 3.85e-89
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Cucsat.G7559 vs. NCBI nr
Match: XP_038878621.1 (histone H2AX [Benincasa hispida])

HSP 1 Score: 267 bits (682), Expect = 5.47e-89
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSSTG STKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGSSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Cucsat.G7559 vs. ExPASy TrEMBL
Match: A0A0A0LW51 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 269 bits (688), Expect = 3.23e-90
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Cucsat.G7559 vs. ExPASy TrEMBL
Match: A0A1S3BQI1 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1)

HSP 1 Score: 269 bits (688), Expect = 3.23e-90
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Cucsat.G7559 vs. ExPASy TrEMBL
Match: A0A5D3CFR7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE=3 SV=1)

HSP 1 Score: 269 bits (688), Expect = 4.85e-90
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Cucsat.G7559 vs. ExPASy TrEMBL
Match: A0A6J1DMK8 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111021819 PE=3 SV=1)

HSP 1 Score: 267 bits (683), Expect = 1.86e-89
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

[Close]

BLAST of Cucsat.G7559 vs. ExPASy TrEMBL
Match: V4TA53 (Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 265 bits (677), Expect = 1.53e-88
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 49  MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 108
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 109 LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 168
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 169 LLPKKVGKDKGDIGSASQEF 188
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

The following BLAST results are available for this feature:

BLAST of Cucsat.G7559 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9K7	2.1e-65	94.37	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	4.8e-65	93.62	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
O65759	6.2e-65	94.29	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
P35063	4.5e-63	91.43	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	2.5e-61	90.00	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of Cucsat.G7559 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653389.1	9.55e-126	100.00	hypothetical protein Csa_007458 [Cucumis sativus]	[more]
XP_004135645.1	6.66e-90	100.00	histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis ...	[more]
TYK10200.1	1.00e-89	100.00	histone H2AX [Cucumis melo var. makuwa]	[more]
XP_022154594.1	3.85e-89	99.29	probable histone H2AXb [Momordica charantia]	[more]
XP_038878621.1	5.47e-89	99.29	histone H2AX [Benincasa hispida]	[more]

BLAST of Cucsat.G7559 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW51	3.23e-90	100.00	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1	[more]
A0A1S3BQI1	3.23e-90	100.00	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1	[more]
A0A5D3CFR7	4.85e-90	100.00	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003450 PE...	[more]
A0A6J1DMK8	1.86e-89	99.29	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111021819 PE=3 SV=1	[more]
V4TA53	1.53e-88	98.57	Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 111..124 score: 89.46 coord: 96..111 score: 84.58 coord: 153..171 score: 70.23 coord: 67..89 score: 69.77 coord: 125..139 score: 75.49
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 56..176 e-value: 1.0E-76 score: 270.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 61..173 e-value: 3.63283E-71 score: 209.114
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 54..181 e-value: 1.4E-62 score: 211.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 70..173
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 145..178 e-value: 4.4E-18 score: 64.7
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 47..142 e-value: 1.2E-14 score: 54.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..73
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 53..186
None	No IPR available	PANTHER	PTHR23430:SF322	HISTONE H2A	coord: 53..186
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 75..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G7559.T1	Cucsat.G7559.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity