Cucsat.G7284 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G7284
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	SOSS complex subunit B-like protein
Location	ctg1528: 5027352 .. 5031811 (-)
RNA-Seq Expression	Cucsat.G7284
Synteny	Cucsat.G7284

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTTGTTGCTCCTATATAATATAAACCCTAGCTCGATTAGGGCTTCATTGGGCGGCCGTCGATATCTGAATCCTCAACTTCTCTTCACTAACTTGTATTCTCTCTTCCTCTCTCGTATAATTCTTTCCTCGATCCCATTCTTGTTTATGTTCTTCAATTCATTGGTTTTTCTTTCTGTTTCTGTAGAGTTTTCTTTAATCGAAAATGAGTCGAGGAGGTGCAGCCGGTCCCAAGGGGAAGAAGAAGGGAGTAACCTTCACAATCGACTGTTCTAAGCCAGTGGAAGATAAGATTATGGACATTGCTTCGTTGGAGAAGTTTCTTCTCGAGAGGATTAAAGTTGGAGGCAAGGCTGGAGCTCTTGGGGATTCCGTCTCTGTTACTCGCGAGAAGAGTAAAATTACCGTCACTTCTGACAGCAACTTCTCCAAGAGGTATACTTTTCCCCTCTTTTGAATCTGTAGTTTGTTCTGAATCGATGGAAGTTCTATTTCGAATGTGGGTATTCTACATGATGAAGTTTTGTATGAAAATGAGTCACTAGGTTGAGGATTTGTTACTTGTTAGCGTTTTGAATGTTTACACAAGACGAGTTATTGTGTGATAAATCAATATGGCGTGTTTGGACTTTGTCCTAGGGTGTTTTAGATTTGTTATGATAAGGGGAAAATTAGGCTTCTTATGTTTGAAACATGATTCCATTTTTCGAATGAGGGTTGGCATTATGGCTGAGTAATTGATTCTAGAATTAGATTTGTGGGTAAACAATTTGAGAGCTCCGATTATGAAACTTGTGGCCAGTTTTCTATTATTATAATTTTCGGAAAGAATAGGCTATTCAAACTAGAAAGTTACTTGGTAGTTCCCTTCCATTATCGTACCAGAAACACAGTTTGCTTCGTCTACTTAAAGTGTTCATTTCATAGGTTTGTTTATGAATAGGAAGAAATAGATTACTGTGCGAGTAATTTTTTTTTTGTTATTAGCCAATTATCCAGCTGTTATTATATTTTCCTTCAAGATGATGCGTCTGATTTGTAGTTTACTAATCACACACACAATCTGTTTTACTCAATTGTTTGGCCGTAGAAGTTTAGTATCTGAATCGTATTAGTTTCTCCATGTTCTCTTCTAGCATTTAGCATTATTCATTAGTTGTTTTAACTTTCCAATCCTCTTTTGGCCCCAAGGAGTCCTTTTGCTATAAAAACTATTCCATGACTTGTTAACTCCTTACACTGTGGGGATCCAAAATAGACAAGTTTAACAACCTTGTTTTCTTCTAAACTTGTGTTTTTCTGGTTAGGTATTTGAAGTACTTGACTAAGAAGTACCTGAAGAAACACAATGTGCGAGATTGGCTACGAGTGATTGCTGCCAACAAAGATAGGAATGTGTACGAACTCAGGTACTTTAACATTGCCGAAAATGAGGGAGAGGAAGAGGATTAAATTTACCAATTTAGACATTGTATTCAAGGAACAAGTGCGTCTATACGTCGCTGGAATCTCTCACTGTTTTTGTTACTAGTGTTGCCTGTGTGATGCTCTCTATTTTTATTTGAACTAATGCAGTTTAGCAATTTTGTTTTCTTCGACAGACCTAGATTGCTGGTATTTTTTGTGTCATATTTGAGTAAGATCAACAATTTTTCACTTTAAATTACCCATGCTTTTCACATGTCTCATGAAATCTAGGTGGATGAATTATATTTATTTGACTAAAAGTTTGAGTTGGTGATTTTATAATGATTCACTTCTGCCAAACTCAGGTTTTCAATGTCAAAATTATCCCAAGATCTAGGTTAAAATGTACCATTTTGGTTAGTATTATTTTTGGTTTTCAATG

Coding sequence (CDS)

ATGAGTCGAGGAGGTGCAGCCGGTCCCAAGGGGAAGAAGAAGGGAGTAACCTTCACAATCGACTGTTCTAAGCCAGTGGAAGATAAGATTATGGACATTGCTTCGTTGGAGAAGTTTCTTCTCGAGAGGATTAAAGTTGGAGGCAAGGCTGGAGCTCTTGGGGATTCCGTCTCTGTTACTCGCGAGAAGAGTAAAATTACCGTCACTTCTGACAGCAACTTCTCCAAGAGGTATTTGAAGTACTTGACTAAGAAGTACCTGAAGAAACACAATGTGCGAGATTGGCTACGAGTGATTGCTGCCAACAAAGATAGGAATGTGTACGAACTCAGGTACTTTAACATTGCCGAAAATGAGGGAGAGGAAGAGGATTAA

Protein sequence

MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEGEEED

Homology

[Close]

BLAST of Cucsat.G7284 vs. ExPASy Swiss-Prot
Match: Q9M9W1 (60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.2e-57
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAA  KGKKKGV+FTIDCSKPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV++T
Sbjct: 1   MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTIT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVT+D  FSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRN+YELRYFNIAENEG
Sbjct: 61  REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120

Query: 121 EEED 125
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. ExPASy Swiss-Prot
Match: Q9FE58 (60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.6e-56
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRG AA  KGKKKGV+FTIDCSKPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVS+T
Sbjct: 1   MSRGNAAAAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSIT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVT+D  FSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRN+YELRYFNIAENE 
Sbjct: 61  REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEA 120

Query: 121 EEED 125
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. ExPASy Swiss-Prot
Match: Q9SRX7 (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.0e-40
Identity = 86/126 (68.25%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 1   MSRGGA--AGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           M+R GA  +G   KKKGV+F IDCSKPV+D I++IA+LEKFL ERIKV GKAGALG+SVS
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAEN 120
           +TR   KI V ++SNFSKRYLKYLTKKYLKK+N+RDWLRVIA+NKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 125
               E+
Sbjct: 121 VASYEE 126

[Close]

BLAST of Cucsat.G7284 vs. ExPASy Swiss-Prot
Match: Q90YU6 (60S ribosomal protein L22 OS=Ictalurus punctatus OX=7998 GN=rpl22 PE=2 SV=3)

HSP 1 Score: 142.5 bits (358), Expect = 3.2e-33
Identity = 79/125 (63.20%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VSV 60
           + +    G K KK+ + FT+DC+ PVED IMD A+ E+FL ERIKV GKAG LG   VS+
Sbjct: 4   LKKPAVKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSI 63

Query: 61  TREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENE 120
            R KSKITVTSD  FSKRYLKYLTKKYLKK+N+RDWLRV+A  K+   YELRYF I ++E
Sbjct: 64  ERSKSKITVTSDIPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDE 123

Query: 121 GEEED 125
            EEED
Sbjct: 124 EEEED 126

[Close]

BLAST of Cucsat.G7284 vs. ExPASy Swiss-Prot
Match: P47198 (60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-33
Identity = 78/120 (65.00%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 6   AAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VSVTREKS 65
           A G K KK+ + FT+DC+ PVED IMD A+ E+FL ERIKV GKAG LG   V++ R KS
Sbjct: 9   AKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKS 68

Query: 66  KITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEGEEED 125
           KITVTS+  FSKRYLKYLTKKYLKK+N+RDWLRV+A +K+   YELRYF I ++E EEED
Sbjct: 69  KITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEED 126

[Close]

BLAST of Cucsat.G7284 vs. NCBI nr
Match: XP_004135607.1 (60S ribosomal protein L22-2 [Cucumis sativus] >XP_008450627.1 PREDICTED: 60S ribosomal protein L22-2 [Cucumis melo] >KAA0050904.1 60S ribosomal protein L22-2 [Cucumis melo var. makuwa] >KAE8653365.1 hypothetical protein Csa_007558 [Cucumis sativus] >TYK10255.1 60S ribosomal protein L22-2 [Cucumis melo var. makuwa])

HSP 1 Score: 241 bits (614), Expect = 5.69e-80
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. NCBI nr
Match: XP_022146066.1 (60S ribosomal protein L22-2 [Momordica charantia] >XP_022933854.1 60S ribosomal protein L22-2 [Cucurbita moschata] >XP_022970154.1 60S ribosomal protein L22-2 [Cucurbita maxima] >XP_023530293.1 60S ribosomal protein L22-2 [Cucurbita pepo subsp. pepo] >XP_038880642.1 60S ribosomal protein L22-2 [Benincasa hispida])

HSP 1 Score: 239 bits (611), Expect = 1.63e-79
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. NCBI nr
Match: XP_022961443.1 (60S ribosomal protein L22-2-like [Cucurbita moschata] >XP_022968816.1 60S ribosomal protein L22-2-like [Cucurbita maxima] >XP_023515962.1 60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238 bits (608), Expect = 4.68e-79
Identity = 122/124 (98.39%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDC+KPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCTKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. NCBI nr
Match: KAG6588488.1 (60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239 bits (611), Expect = 9.92e-79
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VSVT
Sbjct: 55  MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 114

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 115 REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 174

Query: 121 EEED 124
           EEED
Sbjct: 175 EEED 178

[Close]

BLAST of Cucsat.G7284 vs. NCBI nr
Match: KAG6590443.1 (60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (608), Expect = 1.56e-78
Identity = 122/124 (98.39%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDC+KPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VSVT
Sbjct: 37  MSRGGAAGPKGKKKGVTFTIDCTKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 96

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 97  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 156

Query: 121 EEED 124
           EEED
Sbjct: 157 EEED 160

[Close]

BLAST of Cucsat.G7284 vs. ExPASy TrEMBL
Match: A0A5A7U6J1 (60S ribosomal protein L22-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004030 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 2.75e-80
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. ExPASy TrEMBL
Match: A0A1S3BQA5 (60S ribosomal protein L22-2 OS=Cucumis melo OX=3656 GN=LOC103492158 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 2.75e-80
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. ExPASy TrEMBL
Match: A0A6J1I4P7 (60S ribosomal protein L22-2 OS=Cucurbita maxima OX=3661 GN=LOC111469134 PE=3 SV=1)

HSP 1 Score: 239 bits (611), Expect = 7.90e-80
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. ExPASy TrEMBL
Match: A0A6J1CY92 (60S ribosomal protein L22-2 OS=Momordica charantia OX=3673 GN=LOC111015359 PE=3 SV=1)

HSP 1 Score: 239 bits (611), Expect = 7.90e-80
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124

[Close]

BLAST of Cucsat.G7284 vs. ExPASy TrEMBL
Match: A0A6J1F0W8 (60S ribosomal protein L22-2 OS=Cucurbita moschata OX=3662 GN=LOC111441145 PE=3 SV=1)

HSP 1 Score: 239 bits (611), Expect = 7.90e-80
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+VSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVSVT 60

Query: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120
           REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEED 124
           EEED
Sbjct: 121 EEED 124

The following BLAST results are available for this feature:

BLAST of Cucsat.G7284 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9W1	9.2e-57	90.32	60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1	[more]
Q9FE58	4.6e-56	89.52	60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1	[more]
Q9SRX7	6.0e-40	68.25	Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A P...	[more]
Q90YU6	3.2e-33	63.20	60S ribosomal protein L22 OS=Ictalurus punctatus OX=7998 GN=rpl22 PE=2 SV=3	[more]
P47198	4.2e-33	65.00	60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2	[more]

BLAST of Cucsat.G7284 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135607.1	5.69e-80	100.00	60S ribosomal protein L22-2 [Cucumis sativus] >XP_008450627.1 PREDICTED: 60S rib...	[more]
XP_022146066.1	1.63e-79	99.19	60S ribosomal protein L22-2 [Momordica charantia] >XP_022933854.1 60S ribosomal ...	[more]
XP_022961443.1	4.68e-79	98.39	60S ribosomal protein L22-2-like [Cucurbita moschata] >XP_022968816.1 60S riboso...	[more]
KAG6588488.1	9.92e-79	99.19	60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6590443.1	1.56e-78	98.39	60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cucsat.G7284 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6J1	2.75e-80	100.00	60S ribosomal protein L22-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BQA5	2.75e-80	100.00	60S ribosomal protein L22-2 OS=Cucumis melo OX=3656 GN=LOC103492158 PE=3 SV=1	[more]
A0A6J1I4P7	7.90e-80	99.19	60S ribosomal protein L22-2 OS=Cucurbita maxima OX=3661 GN=LOC111469134 PE=3 SV=...	[more]
A0A6J1CY92	7.90e-80	99.19	60S ribosomal protein L22-2 OS=Momordica charantia OX=3673 GN=LOC111015359 PE=3 ...	[more]
A0A6J1F0W8	7.90e-80	99.19	60S ribosomal protein L22-2 OS=Cucurbita moschata OX=3662 GN=LOC111441145 PE=3 S...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 2..110 e-value: 1.2E-25 score: 91.9
None	No IPR available	PANTHER	PTHR13356:SF0	SOSS COMPLEX SUBUNIT B HOMOLOG	coord: 1..138
None	No IPR available	PANTHER	PTHR13356	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	coord: 1..138
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G7284.T2	Cucsat.G7284.T2	mRNA
Cucsat.G7284.T4	Cucsat.G7284.T4	mRNA
Cucsat.G7284.T3	Cucsat.G7284.T3	mRNA
Cucsat.G7284.T1	Cucsat.G7284.T1	mRNA
Cucsat.G7284.T6	Cucsat.G7284.T6	mRNA
Cucsat.G7284.T7	Cucsat.G7284.T7	mRNA
Cucsat.G7284.T8	Cucsat.G7284.T8	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0010212	response to ionizing radiation
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
cellular_component	GO:0070876	SOSS complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome