Cucsat.G5967 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAATAACATTCAACACCACACATGGGTTGCCACCAAACTTATACCATGCTCATCACCATCATCATCATGCTCCTTTAATCCCAACCCTCCATTTCCTCCATCTACTCTATATAAAAAACCATCCAATCCAACCCAAACTCCTTTAAATTTTGTGGTGAGAAGATCAATTTGTTGAAGAAACTAAGGCCAAGTTCTAGGTCATGGAGAAGAGCAAATCATTCCCCAAGTACTCCTCCTCAACCTCGGGTGAGTTCGGTTTCCAAACTCGATCTAACTCTTACAATTTCAACGGTCCGACTGCGAAAGCAACCGGGTTCTCGACCTCGGCCGATCCCGAACTCCAAAGAAAGAGAAGGATTGCGTCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAATGGATCAAAACTAAATTTAGTGACATTCGCTATGGTTTGTGAGTTTCCTCTTTTTCTTTTTCTTTTTTTTCTTTTTTGAACATTGTGTAAACAAGTTTGGCATTTTGATCCGTCTTTTCAAGACTTGGAACCAAATTCAAGATATAATTAAAGAGTTTGGAAGTTGTGTGTGTTTTTGGCTCTGGCTTTATTTTGTTTCTCCATGCAAATATATAAGCTTTTTTTTCCCAATATATATACAAGATCATTTACCTCTCCTCTTAGTTTTGTTTTGGCTGTTCTTTTCTTTTTTAATTCCCATTTTCATTGTGTATTTAAGTTGAATTTAAAAAATCCACTTGTTTTTTGTTCTTGTATGGATCATGAATTAAACCTCTAACCTCTACGACAGAGCTCTGATTCAAACTCACTTGTTCTCCGTTAACCGCTAAGTTCATAAAAGAAAGTGTTTATATGTATTTGTTCATGTGAATAAAATCTACACACATACCAGAGTAAAAGAAATAATGGCTCTTCCTCCTTTCAACCTCAAGCCATCAATTTTGTGTTTTTCTGTTAATGATTTTTCTTGTTCAAATCTAACTCCCAAACTTACTTTCAGTATGTATTTAAATTTTTTTATCTACTTTAACACATAACCTAGCATAAAAATTTTCATCCATCAATTTAATTAACAGCAAAAAAAACTTTAAAAAATTTAAGGTTTTCAAGATAATTGAAAGCCAAAGTCATGGAATTCCATAGTATTTTTTTGGTAATTTAACCTTTATTTTGAAGTTAATATATTTTTAACACATCTTATAATAAAAAATAAAAAAAAAGGTCATGGAAAGGGTAGAATAAGCAATAAGTTGGAGTGAGTACTTGAGAGCCATCGACCTATAAAATTTTTGTATATATAACTCTCTGTTTTACATTCTTCAACCCTAAATTTTTATATATTTGAGTTATTCTTCTCTTTTTTTTTTTTTCCTTTAATTTAATATATGCAAATGAAAAGTTGTTTGAAATGTGGAAAAAGAAAAAAGAAAATAAAAAGGTGAGCTATTCACATTTTCTTTTTCACACGTCTTTGGATTAGTATGAAGATTCCTTACCAAAAATATCATTCGTGGGTAACAGTGGTCCAAATATTAAATATTGAATTAATTAGTTAGAATACAGACAGAAAAGAAAAAGATTGGGTTTTTTTAAAAAATATAACAAACCTCCAAAATATTTACAATGCCTACAAAAATTTTGAAAATGAAAAAAACTAATGGGTCCACTTTGAAAAATATAAAAAATGTCTCAATCATACACACGACTAATCGACCACATGATACGTGATCGTGTAGAAAATGATACACGATTGTGTAGGTAGTATCAACATAAACCACACACGCACATGTGTAATTACTCGTCTAACAATCATGATACGTGCTTTATGTAGGAAATAATACACGATCGCATACCAAAGATCTAAACAATCGTGTACCAAATTTAAACGGATCTTGGTTCACAATCGTGTACCAAGATTTAAACGATTTTTGTTCAATAAATCGTGTACCAAGATCTTTTATATTTGGTACACGATCTTGAAGCAAATAACACTTTGAAAAAAATAATATAAGATTGTTGATTGATTGAAAAAAAAAAAAGATAATAATTGTAGAAGTATAATGAAAAAGAATAATAATAATTGTAGAAGAATGATTATAATTTCAAAAAAATATATATAAAAGAAAAATTGCAAAAGAAGAAGAGAATGAAGAAAATGGATAGGAAGAGGAAGAAACCGGGGTCGCACGAAATGCAAAAGCAAAAACGGCAAACCTGAAATATTTATAAAAAAAATGGACAGCTTCATAGACTTTTTGATTTTGTTACACGGACCATAAATATTTTGGTGTTTTATTATATATATATGAAAATTAACCTTAAGACAATTCATTTATGTAAAGCGAAATTGTTTTAAATGACAAAATTATTAGAAATGTTTATTAATATAAACAATTTTACTTTCTGTCAATAATAAATTGTGATAGATCTCATATAGATGTCTATTACTTTAATTATAGACATTAATAGATGTATATGTGAGTCTGTCACAATCCATCAATGATAGACTATAAAATTTTGATATATTTATAATTAAGTTAATTCATACATTATTAAAGACATTTGTGACTCTGATCGCGAACTTCCTTTACGCAATAAGACTCCATGCGGCGAAAATAACTTATGCGATAAGAAGTAACTATGCGATGAGAGAAAGACTACGTGGGAACCCTTGTTACAATATAAGCCTACTTAACTAGAAAGTAATTATGCCATTTCTCATGTAAGGAAGTCGGCAATTGATTTATTCTTGTCGTCCAATCCAAATTCGAGATAAGGATAGTGCAAAGACATTAGCGTCCTAGTATTGGACTTCTCACTGTCGGCAAAAATAATTATTTCAATATGGAAGACTTTACTAGAAAGCCTTATAAATTAATAGAGGAAATACTGTCATTTTGAAGTTGCTTTTACCATGAGTCCAGTTAAGAGAGAATTAAGAAGATTTTTTAGGTTTTCAGAGATCCAAAACAAGTCTGAGAATCCGGCAAGAATTGCAAGAAAGTGCAAGGAAACGCTTGGCTAAGGAATTAGACAGAAAAGCTAGCTGATTGTGATTATGAGTGGTTATTCTCATAAAATATTTTCAAAATGAAAAGGATTTCTAAAGTGTATTCAAATCCTTAAATATATTTCTATCGAAAACATGAACGATATGGTTTCTCTTTTGCTTTCCAATTCTTAAAATGCATATATAAATGAATTGGTATTATAATTATAAACTAGAATGATGTGATGAAATTATGCGTTCTCGAGAATGCATGAGATTTGATAAAGGTTGAAGTGAGATGATCATACAACACGAAATGAATTATGAAAAGTGATTTAAGAGAAGTATTTTGTGATTTTCTAAATGAAAGAAAAGTTTTGAAAGCATTCTCTCCAAGTCCTACGTTGCATTTTTGTGTAACACGTTGTATATGTTATTGTTAATGTTGACGTTGTTTATGTGAAAAGACAAAACCAATTTTTCTTGAAATGATGATTTCGAAAGAATGCATGAGACTTGATAAAGTTTGAAATGAGATGATCTTTTGTAATCTATGAAATATAATGTCTCATACTTGTGTGATATGGTATGGGATGCCTTATCATTGTTGTGTGATCTGGAATAGAATACTCTATTTATGTTGTGTGATCTTGAATAGGATGCCTCATATTTACTGTATGATCTAGTATGAAATGTCATTCACTCCAAGTCTATGAGCAACTACAATAACTTTCTTGAGAAATGAGAGTTCTTTTGTACTTTCTTTGACAATGCATCTTTAATTGCTTTTTAAATTGATATTTGTGCAATTTTCTCTTTTGCTAAATGATTTTTTTTTCTTTTTGGCTTGGTCACCCAATAATTCTAGGATTCGAACCACGATTTGGAATTCAAATCCTCCACATTTTCTTGCATCTTCT ATGGAGAAGAGCAAATCATTCCCCAAGTACTCCTCCTCAACCTCGGGTGAGTTCGGTTTCCAAACTCGATCTAACTCTTACAATTTCAACGGTCCGACTGCGAAAGCAACCGGGTTCTCGACCTCGGCCGATCCCGAACTCCAAAGAAAGAGAAGGATTGCGTCTTATAATGTTTTCAACATGGAAAACAAAGTCAAGTCTAGTGTAAAGAACAGCTTCAAATGGATCAAAACTAAATTTAGTGACATTCGCTATGGATTCGAACCACGATTTGGAATTCAAATCCTCCACATTTTCTTGCATCTT MEKSKSFPKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGFEPRFGIQILHIFLHL Homology
BLAST of Cucsat.G5967 vs. NCBI nr
Match: KGN45893.1 (hypothetical protein Csa_005289 [Cucumis sativus]) HSP 1 Score: 169 bits (427), Expect = 2.38e-52 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Cucsat.G5967 vs. NCBI nr
Match: KAA0039168.1 (Mediator of RNA polymerase II transcription subunit 8 [Cucumis melo var. makuwa]) HSP 1 Score: 167 bits (423), Expect = 9.71e-52 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Cucsat.G5967 vs. NCBI nr
Match: XP_023536368.1 (uncharacterized protein LOC111797558 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 161 bits (407), Expect = 2.68e-49 Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Cucsat.G5967 vs. NCBI nr
Match: XP_022930185.1 (uncharacterized protein LOC111436683 [Cucurbita moschata] >KAG6592294.1 hypothetical protein SDJN03_14640, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025131.1 hypothetical protein SDJN02_13954, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 161 bits (407), Expect = 2.68e-49 Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Cucsat.G5967 vs. NCBI nr
Match: XP_022974055.1 (uncharacterized protein LOC111472683 [Cucurbita maxima]) HSP 1 Score: 155 bits (393), Expect = 3.66e-47 Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 0
BLAST of Cucsat.G5967 vs. ExPASy TrEMBL
Match: A0A0A0K8Y3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017090 PE=4 SV=1) HSP 1 Score: 169 bits (427), Expect = 1.15e-52 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Cucsat.G5967 vs. ExPASy TrEMBL
Match: A0A5A7T8F8 (Mediator of RNA polymerase II transcription subunit 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00710 PE=4 SV=1) HSP 1 Score: 167 bits (423), Expect = 4.70e-52 Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0
BLAST of Cucsat.G5967 vs. ExPASy TrEMBL
Match: A0A6J1EWA0 (uncharacterized protein LOC111436683 OS=Cucurbita moschata OX=3662 GN=LOC111436683 PE=4 SV=1) HSP 1 Score: 161 bits (407), Expect = 1.30e-49 Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of Cucsat.G5967 vs. ExPASy TrEMBL
Match: A0A6J1ICY9 (uncharacterized protein LOC111472683 OS=Cucurbita maxima OX=3661 GN=LOC111472683 PE=4 SV=1) HSP 1 Score: 155 bits (393), Expect = 1.77e-47 Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 0
BLAST of Cucsat.G5967 vs. ExPASy TrEMBL
Match: A0A2P5BV48 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_207620 PE=4 SV=1) HSP 1 Score: 139 bits (350), Expect = 6.38e-41 Identity = 69/86 (80.23%), Postives = 78/86 (90.70%), Query Frame = 0
BLAST of Cucsat.G5967 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 85.9 bits (211), Expect = 2.1e-17 Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 0
BLAST of Cucsat.G5967 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 55.8 bits (133), Expect = 2.3e-08 Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 0
BLAST of Cucsat.G5967 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 54.7 bits (130), Expect = 5.1e-08 Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 0
BLAST of Cucsat.G5967 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06 Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 0
BLAST of Cucsat.G5967 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) ) HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06 Identity = 20/43 (46.51%), Postives = 33/43 (76.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|