Cucsat.G5557 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G5557
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Expansin
Location	ctg1296: 317284 .. 318931 (-)
RNA-Seq Expression	Cucsat.G5557
Synteny	Cucsat.G5557

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCTTTCTCCTCCATAAGTACTCCACCATCTCTTTCCCTTACCCATCATCTCCTTTGTCTTCCCTCCCTCTCTAACCGCGTTTTCTCTTTCACTTTCTCCATTAACAAAAAACATGGCCACTCCATTCTCTCTCTGCATTCCCCTTCTTCTCTCATTTTCCCTCCTAATCGAAGCCAGAATCCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGTGCCCACGCTACTTTCTACGGCGGCTCCGACGCTTCCGGCACAATGGGTACATTTTAGTTTAACTCCTTCAAACTCTACTTCTTACATTCAATGTGTATATGCTTAACTCCCAACTTTGCAGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGCTACGGCGTTAACACCGCGGCGCTTAGTACTGCGCTTTTCAACAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGATCCAAGATGGTGCCATTCTGGTAGCCCGTCGATATTGATTACTGCTACTAATTTCTGCCCGCCGAACTATGCTCTTCCGAACGATAATGGCGGCTGGTGTAATCCCCCGAGGTCTCATTTTGACCTCGCTATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTTTCGTACCGCCGGTAAGTCTTTTGCGAATGCGAATTAATTTTGAAGGTCCTTAAAAAATGTATGGGTGAAACTTGAAAATAATGTACGAGTAGAAAGTAAAAAGTAGAAGTAGGGATTCAGCATTGAAGTAGGGTGATACTAGGAGAAATGATAAGATATATGATGGATGTTTTAGTACTATGGGCTCTAACGTTTGGGTATATAATTACGCAGAGTACCATGCCGTAAGCAAGGAGGAATCCGGTTCACCATCAACGGGTTTCGTTACTTCAATCTGGTTCTAATAACGAACGTGGCAGGGGCAGGGGATATCGTGAGGGTGAGTGTGAAAGGAACAAGAACCGGTTGGATGAGTTTAACAAGAAACTGGGGACAGAATTGGCAATCCAACGCAGTATTGGTGGGTCAAGCTCTTTCTTTTAGAGTGACGGGCAGCGACCGACGAACCTCAACGTCATGGAACATTGCCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTGTAACCCCAAGTTAAAAGAGAAAAAGAAGAATCTGTTTTAACTGTGGTTAGGTTACTTTGATTTTTTTCTTTTTTTTTAAGAAAATGAATTTCCATTTATAACCTTTGTGGAAGTGTTTGTTTTTTTTTTATATGAGACTGAGACTAATCTGATCTGAGCGTAATTAGGAGCGAGGATCGGGGGGGTATTATTGGAAGAGTGTATTTTGACTGGGGTTGGGTTATGAGGTTTACCGTTTTAAGTGATGGGAAGGCTGAAGCGGCTGAATGAAGATTGTGGCCCGCAGTCTTGGTTTATAGATTAATTTGAGTCTTACAGATTTATTTGTAGTGATCTCTACTACTACTACTGCTACTTCAAATTATTATGTGTGTAATTTTTCTGTCTTTTCTTTCTTTCCTTCCTTTTCTATTATACATTTTAATTGAATTGTACTATTGTTGGGATTAATTTGCCTCTCTTTATTTCGCTTTTCCCATAGTATTTTGTTAATCTGGTGTTTGCTGTCAAGTAAATAGATGG

Coding sequence (CDS)

ATGTGTATATGCTTAACTCCCAACTTTGCAGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGCTACGGCGTTAACACCGCGGCGCTTAGTACTGCGCTTTTCAACAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGATCCAAGATGGTGCCATTCTGGTAGCCCGTCGATATTGATTACTGCTACTAATTTCTGCCCGCCGAACTATGCTCTTCCGAACGATAATGGCGGCTGGTGTAATCCCCCGAGGTCTCATTTTGACCTCGCTATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTTTCGTACCGCCGAGTACCATGCCGTAAGCAAGGAGGAATCCGGTTCACCATCAACGGGTTTCGTTACTTCAATCTGGTTCTAATAACGAACGTGGCAGGGGCAGGGGATATCGTGAGGGTGAGTGTGAAAGGAACAAGAACCGGTTGGATGAGTTTAACAAGAAACTGGGGACAGAATTGGCAATCCAACGCAGTATTGGTGGGTCAAGCTCTTTCTTTTAGAGTGACGGGCAGCGACCGACGAACCTCAACGTCATGGAACATTGCCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTGTAA

Protein sequence

MCICLTPNFAGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPAHWQFGQTFTGKNFRV

Homology

[Close]

BLAST of Cucsat.G5557 vs. ExPASy Swiss-Prot
Match: O48818 (Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.0e-73
Identity = 127/156 (81.41%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MA   ++     + FS L +ARIPG+YSGG WQ+AHATFYGGSDASGTMGGACGYGNLYS
Sbjct: 1   MAIKLAILFTTFVLFS-LADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYG NTAALSTALFN G SCGACFE+KCANDP+WCHSGSPSILITATNFCPPN A P+D
Sbjct: 61  QGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSD 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 157
           NGGWCNPPR HFDLAMP+FLKIA+YRAGIVPVSYRR
Sbjct: 121 NGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of Cucsat.G5557 vs. ExPASy Swiss-Prot
Match: Q38865 (Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 274.6 bits (701), Expect = 6.8e-73
Identity = 125/150 (83.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 7   LCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 66
           L + +L +   L EARIPGVY+GG W++AHATFYGGSDASGTMGGACGYGNLYSQGYGVN
Sbjct: 6   LVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 65

Query: 67  TAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCN 126
           TAALSTALFN G SCGACFE+KCA+DP+WCHSGSPSI ITATNFCPPN+A P+DNGGWCN
Sbjct: 66  TAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCN 125

Query: 127 PPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 157
           PPR HFDLAMPMFLKIAEYRAGIVPVS+RR
Sbjct: 126 PPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155

[Close]

BLAST of Cucsat.G5557 vs. ExPASy Swiss-Prot
Match: O80932 (Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70
Identity = 125/158 (79.11%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 2   ATPFSLCIPLLLSFSLLI---EARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNL 61
           AT F + + L ++ S L+    A+IPGVYSGGPWQ+AHATFYGGSDASGTMGGACGYGNL
Sbjct: 3   ATAFRVGLWLAVTASFLLTATNAKIPGVYSGGPWQNAHATFYGGSDASGTMGGACGYGNL 62

Query: 62  YSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALP 121
           YSQGYGVNTAALSTALFN G SCGACFEIKC +DPRWC  G+PSIL+TATNFCPPN+A P
Sbjct: 63  YSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQP 122

Query: 122 NDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 157
           +D+GGWCNPPR HFDLAMPMFLKI  YRAGIVPVSYRR
Sbjct: 123 SDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRR 160

[Close]

BLAST of Cucsat.G5557 vs. ExPASy Swiss-Prot
Match: Q852A1 (Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.1e-70
Identity = 123/137 (89.78%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 22  RIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSC 81
           RIPG Y GG WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVN AALSTALFN GQSC
Sbjct: 26  RIPGAYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSC 85

Query: 82  GACFEIKCANDP--RWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMF 141
           GACFEIKC N P   WCH GSPSILITATNFCPPNYALP+DNGGWCNPPR HFDLAMPMF
Sbjct: 86  GACFEIKCVNQPGWEWCHPGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMF 145

Query: 142 LKIAEYRAGIVPVSYRR 157
           L IAEYRAGIVPVSYRR
Sbjct: 146 LHIAEYRAGIVPVSYRR 162

[Close]

BLAST of Cucsat.G5557 vs. ExPASy Swiss-Prot
Match: Q9M2S9 (Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-70
Identity = 120/146 (82.19%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 11  LLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAAL 70
           LLLSF+   +A IP V+SGG WQ+AHATFYGG+DASGTMGGACGYGNLYSQGYG NTAAL
Sbjct: 16  LLLSFT---DAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAAL 75

Query: 71  STALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRS 130
           ST+LFN GQSCGACFEIKC NDP+WCH G+PS+ +TATNFCPPN A P+DNGGWCNPPRS
Sbjct: 76  STSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRS 135

Query: 131 HFDLAMPMFLKIAEYRAGIVPVSYRR 157
           HFDLAMP+FLKIAEYRAGIVP+SYRR
Sbjct: 136 HFDLAMPVFLKIAEYRAGIVPISYRR 158

[Close]

BLAST of Cucsat.G5557 vs. NCBI nr
Match: XP_004143121.1 (expansin-A4 [Cucumis sativus] >KGN47143.1 hypothetical protein Csa_020911 [Cucumis sativus])

HSP 1 Score: 332 bits (851), Expect = 1.56e-113
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS
Sbjct: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. NCBI nr
Match: XP_008464122.1 (PREDICTED: expansin-A4 [Cucumis melo] >KAA0061905.1 expansin-A4 [Cucumis melo var. makuwa] >QDL52547.1 expansin A4 [Cucumis melo] >TYK24025.1 expansin-A4 [Cucumis melo var. makuwa])

HSP 1 Score: 324 bits (831), Expect = 1.74e-110
Identity = 152/156 (97.44%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MATP SLCI LLLSFSLLI+ARIPGVYSGGPWQSAHATFYGG+DASGTMGGACGYGNLYS
Sbjct: 1   MATPISLCIALLLSFSLLIDARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. NCBI nr
Match: XP_038900461.1 (expansin-A4-like [Benincasa hispida])

HSP 1 Score: 317 bits (811), Expect = 1.93e-107
Identity = 148/156 (94.87%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MAT  SLCI  LLSFSLL++ARIPGVYSGGPWQSAHATFYGG+DASGTMGGACGYGNLYS
Sbjct: 1   MATIISLCIASLLSFSLLVDARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPR+HFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. NCBI nr
Match: XP_022986925.1 (expansin-A4 [Cucurbita maxima])

HSP 1 Score: 311 bits (796), Expect = 3.70e-105
Identity = 145/156 (92.95%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MA    LCI   LSF LL+EARIPG+YSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS
Sbjct: 1   MAINIPLCIASFLSFFLLVEARIPGIYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPR+HFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. NCBI nr
Match: XP_022943950.1 (expansin-A4-like [Cucurbita moschata] >XP_023511997.1 expansin-A4-like [Cucurbita pepo subsp. pepo] >KAG6570696.1 Expansin-A4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010543.1 Expansin-A4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311 bits (796), Expect = 3.70e-105
Identity = 145/156 (92.95%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MA    LCI   LSF LL+EARIPG+YSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS
Sbjct: 1   MAINIPLCIASFLSFFLLVEARIPGIYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPR+HFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. ExPASy TrEMBL
Match: A0A0A0KC92 (Expansin OS=Cucumis sativus OX=3659 GN=Csa_6G190340 PE=3 SV=1)

HSP 1 Score: 332 bits (851), Expect = 7.57e-114
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS
Sbjct: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. ExPASy TrEMBL
Match: A0A1S3CKT4 (Expansin OS=Cucumis melo OX=3656 GN=LOC103502079 PE=2 SV=1)

HSP 1 Score: 324 bits (831), Expect = 8.41e-111
Identity = 152/156 (97.44%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MATP SLCI LLLSFSLLI+ARIPGVYSGGPWQSAHATFYGG+DASGTMGGACGYGNLYS
Sbjct: 1   MATPISLCIALLLSFSLLIDARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. ExPASy TrEMBL
Match: A0A5D3DKA0 (Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001240 PE=3 SV=1)

HSP 1 Score: 324 bits (831), Expect = 8.41e-111
Identity = 152/156 (97.44%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MATP SLCI LLLSFSLLI+ARIPGVYSGGPWQSAHATFYGG+DASGTMGGACGYGNLYS
Sbjct: 1   MATPISLCIALLLSFSLLIDARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. ExPASy TrEMBL
Match: A0A6J1JFD8 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111484518 PE=3 SV=1)

HSP 1 Score: 311 bits (796), Expect = 1.79e-105
Identity = 145/156 (92.95%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MA    LCI   LSF LL+EARIPG+YSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS
Sbjct: 1   MAINIPLCIASFLSFFLLVEARIPGIYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPR+HFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. ExPASy TrEMBL
Match: A0A6J1FYD8 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111448523 PE=3 SV=1)

HSP 1 Score: 311 bits (796), Expect = 1.79e-105
Identity = 145/156 (92.95%), Postives = 148/156 (94.87%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MA    LCI   LSF LL+EARIPG+YSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS
Sbjct: 1   MAINIPLCIASFLSFFLLVEARIPGIYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND
Sbjct: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 156
           NGGWCNPPR+HFDLAMPMFLKIAEYRAGIVPVSYRR
Sbjct: 121 NGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRR 156

[Close]

BLAST of Cucsat.G5557 vs. TAIR 10
Match: AT2G39700.1 (expansin A4 )

HSP 1 Score: 275.8 bits (704), Expect = 2.2e-74
Identity = 127/156 (81.41%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MA   ++     + FS L +ARIPG+YSGG WQ+AHATFYGGSDASGTMGGACGYGNLYS
Sbjct: 1   MAIKLAILFTTFVLFS-LADARIPGIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYG NTAALSTALFN G SCGACFE+KCANDP+WCHSGSPSILITATNFCPPN A P+D
Sbjct: 61  QGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSD 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 157
           NGGWCNPPR HFDLAMP+FLKIA+YRAGIVPVSYRR
Sbjct: 121 NGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of Cucsat.G5557 vs. TAIR 10
Match: AT2G28950.1 (expansin A6 )

HSP 1 Score: 274.6 bits (701), Expect = 4.8e-74
Identity = 125/150 (83.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 7   LCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 66
           L + +L +   L EARIPGVY+GG W++AHATFYGGSDASGTMGGACGYGNLYSQGYGVN
Sbjct: 6   LVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVN 65

Query: 67  TAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCN 126
           TAALSTALFN G SCGACFE+KCA+DP+WCHSGSPSI ITATNFCPPN+A P+DNGGWCN
Sbjct: 66  TAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCN 125

Query: 127 PPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 157
           PPR HFDLAMPMFLKIAEYRAGIVPVS+RR
Sbjct: 126 PPRPHFDLAMPMFLKIAEYRAGIVPVSFRR 155

[Close]

BLAST of Cucsat.G5557 vs. TAIR 10
Match: AT2G37640.1 (Barwin-like endoglucanases superfamily protein )

HSP 1 Score: 267.3 bits (682), Expect = 7.7e-72
Identity = 125/158 (79.11%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 2   ATPFSLCIPLLLSFSLLI---EARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNL 61
           AT F + + L ++ S L+    A+IPGVYSGGPWQ+AHATFYGGSDASGTMGGACGYGNL
Sbjct: 3   ATAFRVGLWLAVTASFLLTATNAKIPGVYSGGPWQNAHATFYGGSDASGTMGGACGYGNL 62

Query: 62  YSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALP 121
           YSQGYGVNTAALSTALFN G SCGACFEIKC +DPRWC  G+PSIL+TATNFCPPN+A P
Sbjct: 63  YSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQP 122

Query: 122 NDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 157
           +D+GGWCNPPR HFDLAMPMFLKI  YRAGIVPVSYRR
Sbjct: 123 SDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRR 160

[Close]

BLAST of Cucsat.G5557 vs. TAIR 10
Match: AT3G55500.1 (expansin A16 )

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-71
Identity = 120/146 (82.19%), Postives = 133/146 (91.10%), Query Frame = 0


Query: 11  LLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAAL 70
           LLLSF+   +A IP V+SGG WQ+AHATFYGG+DASGTMGGACGYGNLYSQGYG NTAAL
Sbjct: 16  LLLSFT---DAGIPRVFSGGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAAL 75

Query: 71  STALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRS 130
           ST+LFN GQSCGACFEIKC NDP+WCH G+PS+ +TATNFCPPN A P+DNGGWCNPPRS
Sbjct: 76  STSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRS 135

Query: 131 HFDLAMPMFLKIAEYRAGIVPVSYRR 157
           HFDLAMP+FLKIAEYRAGIVP+SYRR
Sbjct: 136 HFDLAMPVFLKIAEYRAGIVPISYRR 158

[Close]

BLAST of Cucsat.G5557 vs. TAIR 10
Match: AT5G02260.1 (expansin A9 )

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-66
Identity = 114/156 (73.08%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 1   MATPFSLCIPLLLSFSLLIEARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYS 60
           MA      + +++  +    A+IPGVY+GGPW +AHATFYG +DASGTMGGACGYGNLYS
Sbjct: 1   MAAKVITFMAVMVVTAFTANAKIPGVYTGGPWINAHATFYGEADASGTMGGACGYGNLYS 60

Query: 61  QGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPND 120
           QGYGVNTAALSTALFN G SCG+CFE+KC NDP WC  G+PSILITATNFCPPN+   +D
Sbjct: 61  QGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASD 120

Query: 121 NGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRR 157
           NGGWCNPPR HFDLAMPMFL IA+Y+AGIVPVSYRR
Sbjct: 121 NGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156

The following BLAST results are available for this feature:

BLAST of Cucsat.G5557 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48818	3.0e-73	81.41	Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1	[more]
Q38865	6.8e-73	83.33	Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2	[more]
O80932	1.1e-70	79.11	Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1	[more]
Q852A1	1.1e-70	89.78	Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1	[more]
Q9M2S9	1.4e-70	82.19	Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1	[more]

BLAST of Cucsat.G5557 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143121.1	1.56e-113	100.00	expansin-A4 [Cucumis sativus] >KGN47143.1 hypothetical protein Csa_020911 [Cucum...	[more]
XP_008464122.1	1.74e-110	97.44	PREDICTED: expansin-A4 [Cucumis melo] >KAA0061905.1 expansin-A4 [Cucumis melo va...	[more]
XP_038900461.1	1.93e-107	94.87	expansin-A4-like [Benincasa hispida]	[more]
XP_022986925.1	3.70e-105	92.95	expansin-A4 [Cucurbita maxima]	[more]
XP_022943950.1	3.70e-105	92.95	expansin-A4-like [Cucurbita moschata] >XP_023511997.1 expansin-A4-like [Cucurbit...	[more]

BLAST of Cucsat.G5557 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC92	7.57e-114	100.00	Expansin OS=Cucumis sativus OX=3659 GN=Csa_6G190340 PE=3 SV=1	[more]
A0A1S3CKT4	8.41e-111	97.44	Expansin OS=Cucumis melo OX=3656 GN=LOC103502079 PE=2 SV=1	[more]
A0A5D3DKA0	8.41e-111	97.44	Expansin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001240 PE=3...	[more]
A0A6J1JFD8	1.79e-105	92.95	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111484518 PE=3 SV=1	[more]
A0A6J1FYD8	1.79e-105	92.95	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111448523 PE=3 SV=1	[more]

BLAST of Cucsat.G5557 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39700.1	2.2e-74	81.41	expansin A4	[more]
AT2G28950.1	4.8e-74	83.33	expansin A6	[more]
AT2G37640.1	7.7e-72	79.11	Barwin-like endoglucanases superfamily protein	[more]
AT3G55500.1	1.0e-71	82.19	expansin A16	[more]
AT5G02260.1	1.3e-66	73.08	expansin A9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 239..253 score: 55.83 coord: 201..215 score: 63.0 coord: 49..67 score: 76.97 coord: 31..46 score: 68.12 coord: 71..89 score: 69.61 coord: 147..163 score: 68.53
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 163..175 score: 84.1 coord: 175..196 score: 73.48 coord: 103..113 score: 83.64 coord: 62..76 score: 90.0 coord: 89..100 score: 53.33 coord: 210..231 score: 74.09 coord: 122..139 score: 78.89 coord: 139..152 score: 78.33 coord: 239..255 score: 63.92
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 67..154 e-value: 3.0E-59 score: 212.8
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 50..164 score: 31.270782
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 21..160 e-value: 2.5E-47 score: 162.4
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 31..182
IPR036749	Expansin, cellulose-binding-like domain superfamily	GENE3D	2.60.40.760		coord: 164..256 e-value: 2.0E-22 score: 80.9
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	49590	PHL pollen allergen	coord: 161..253
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 67..154 e-value: 1.1E-21 score: 77.0
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Expansin_C	coord: 165..242 e-value: 6.2E-25 score: 87.0
IPR007117	Expansin, cellulose-binding-like domain	PROSITE	PS50843	EXPANSIN_CBD	coord: 174..253 score: 20.977192
None	No IPR available	PANTHER	PTHR31867:SF100	EXPANSIN	coord: 7..257
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 7..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G5557.T2	Cucsat.G5557.T2	mRNA
Cucsat.G5557.T1	Cucsat.G5557.T1	mRNA
Cucsat.G5557.T3	Cucsat.G5557.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane