Cucsat.G5092 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G5092
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DEAD-box ATP-dependent RNA helicase FANCM isoform X1
Location	ctg1227: 3550240 .. 3551479 (-)
RNA-Seq Expression	Cucsat.G5092
Synteny	Cucsat.G5092

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGCAACCGAAACAGCCATTAATGTCCCCAATTTTCGTTTAAAAGTTTTGCCGCCGTTTGCTCCATCTCTTCACTCGTTAAGTTATTTTCGCTTTCCTGCGTTGAGAGTTATTTTGTTATATGGCGTTTAGGACGTTTCCGATGGCAACAAGTAGTCGAGAATTCACTGTCGACGACAACGACGACGACGACGTAAATGCCGTTCCCGTCCTTCCTCTTTCTTGTTAACTTACCTCATATGTCTGAGTCCTTTGACCTTTCTCTCCCATCCCATTTTCAGGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCAGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCGCTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGAACTTCTCGCCAGTCTACACTTCACAGATTTATCGTGAATGCCAAGTTTCGAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCTAAGACCTGGATATATCCAGGTCGTATTTGAATTCCGGACTAATTTTGATTTCCATTGTTTTGGGATTGTTATCTACGGACTCAATTTCTTCTATTCTCACCATGATCTTCTGTGAAACGTACTCCTCACTTACCCCAAGTAACTAGAACATGTAAAATACAAAAGATAACCTAAATTTGTCAACTGACTGTTTAGATCAACTACAAGCTTCTTCAGGCGGCATATGTTTTACTGCAAGAGTTGTGCTCCTATTTTGGAATGCAACGAATCTAATTTACTTCCTCAAACCATATAGTTTTTGGTAGCCTTTCTTTTGTTTCAACTCTAAGTTTGTTTAACATGCCAATATATTCCTTGGAATTTCTAGAGTTCACTGTTTGATATGTAGGTTATAAATTTCATGAAGTCAGAAGATAAGGAGATTTGTTTCGTATTATGATACAATATTTTGCATCATTGACTGCTTGATGGATTATTCCTATTCTTAGAAGTTAGGTGTTTATAGAAATTATAATCTGATGTGATGTCAGTTAAATCATGTAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACATTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTT

Coding sequence (CDS)

ATGGCGTTTAGGACGTTTCCGATGGCAACAAGTAGTCGAGAATTCACTGTCGACGACAACGACGACGACGACGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCAGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCGCTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGAACTTCTCGCCAGTCTACACTTCACAGATTTATCGTGAATGCCAAGTTTCGAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCTAAGACCTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACATTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTT

Protein sequence

MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV

Homology

[Close]

BLAST of Cucsat.G5092 vs. ExPASy Swiss-Prot
Match: I3XHK1 (DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.9e-27
Identity = 83/157 (52.87%), Postives = 103/157 (65.61%), Query Frame = 0


Query: 17  VDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETP-ASFPLSEEN 76
           ++  ++D +FDWEAAVKEID+A L   +++SS S H            TP A+ P++   
Sbjct: 7   IETIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSH-----------FTPLANPPITANL 66

Query: 77  EKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVE-DSVGLVDIDEEAAKTWIYPVN 136
            K    RQSTL +FI   + + +   V   V + G+ + D+  LV ID EAAKTWIYPVN
Sbjct: 67  TKPPAKRQSTLDKFIGRTEHKPENHQV---VSECGVNDNDNSPLVGIDPEAAKTWIYPVN 126

Query: 137 --VPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 170
             VPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 127 GSVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAV 149

[Close]

BLAST of Cucsat.G5092 vs. ExPASy Swiss-Prot
Match: Q9UT23 (ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 120 DIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 170
           ++DE AA+ W+YP+NV  RDYQ  I + ALF N LVALPTGLGKT IAAV
Sbjct: 56  ELDESAAQQWVYPINVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAV 105

[Close]

BLAST of Cucsat.G5092 vs. ExPASy Swiss-Prot
Match: Q7SDF3 (ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 120 DIDEEAAKTWIYPVNV-PLRDYQLAITKTALFSNTLVALPTGLGKTLIAA 169
           +ID E  KTW+YP+N+ P+RDYQ +I K  LF+NTLVALPTGLGKT IAA
Sbjct: 137 EIDIEEMKTWVYPMNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAA 186

[Close]

BLAST of Cucsat.G5092 vs. ExPASy Swiss-Prot
Match: Q8BGE5 (Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 125 AAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 170
           A   WIYP N P+RDYQL I+++ALF NTLV LPTGLGKT IAAV
Sbjct: 67  AGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAV 111

[Close]

BLAST of Cucsat.G5092 vs. ExPASy Swiss-Prot
Match: Q8IYD8 (Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 125 AAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 170
           A   WIYP N P+RDYQL I++ ALF NTLV LPTGLGKT IAAV
Sbjct: 79  AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAV 123

[Close]

BLAST of Cucsat.G5092 vs. NCBI nr
Match: TYK06568.1 (Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa])

HSP 1 Score: 296 bits (759), Expect = 2.45e-100
Identity = 157/166 (94.58%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 7   PMATSSREFTVDDNDDDD---DFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAA 66
           PMA S+REFTVDDNDDDD   DFDWEAAVKEIDVA LSGIHSASSHSLHPSLTESSDA A
Sbjct: 3   PMAASNREFTVDDNDDDDVNADFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDATA 62

Query: 67  ETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDE 126
           ETPASFPLSEENEKRGTSRQSTLHRFI+NAKF+KKTMDVEKPVQDPGLVEDSVGLVDIDE
Sbjct: 63  ETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDIDE 122

Query: 127 EAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           EAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 123 EAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 168

[Close]

BLAST of Cucsat.G5092 vs. NCBI nr
Match: XP_031736812.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucumis sativus])

HSP 1 Score: 322 bits (825), Expect = 2.71e-100
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169

[Close]

BLAST of Cucsat.G5092 vs. NCBI nr
Match: KAE8652234.1 (hypothetical protein Csa_022145 [Cucumis sativus])

HSP 1 Score: 322 bits (825), Expect = 5.12e-100
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169

[Close]

BLAST of Cucsat.G5092 vs. NCBI nr
Match: XP_031736810.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X5 [Cucumis sativus])

HSP 1 Score: 322 bits (825), Expect = 1.20e-99
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169

[Close]

BLAST of Cucsat.G5092 vs. NCBI nr
Match: XP_031736809.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X4 [Cucumis sativus])

HSP 1 Score: 322 bits (825), Expect = 1.64e-99
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169

[Close]

BLAST of Cucsat.G5092 vs. ExPASy TrEMBL
Match: A0A0A0LPX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G395690 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 1.07e-110
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169

[Close]

BLAST of Cucsat.G5092 vs. ExPASy TrEMBL
Match: A0A5D3C5Y0 (Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00300 PE=4 SV=1)

HSP 1 Score: 296 bits (759), Expect = 1.19e-100
Identity = 157/166 (94.58%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 7   PMATSSREFTVDDNDDDD---DFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAA 66
           PMA S+REFTVDDNDDDD   DFDWEAAVKEIDVA LSGIHSASSHSLHPSLTESSDA A
Sbjct: 3   PMAASNREFTVDDNDDDDVNADFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDATA 62

Query: 67  ETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDE 126
           ETPASFPLSEENEKRGTSRQSTLHRFI+NAKF+KKTMDVEKPVQDPGLVEDSVGLVDIDE
Sbjct: 63  ETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDIDE 122

Query: 127 EAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           EAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 123 EAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 168

[Close]

BLAST of Cucsat.G5092 vs. ExPASy TrEMBL
Match: A0A1S3B2S2 (Fanconi anemia group M protein isoform X6 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 308 bits (790), Expect = 2.60e-95
Identity = 161/169 (95.27%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFR  PMA S+REFTVDDNDDDDDFDWEAAVKEIDVA LSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           A AETPASFPLSEENEKRGTSRQSTLHRFI+NAKF+KKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169

[Close]

BLAST of Cucsat.G5092 vs. ExPASy TrEMBL
Match: A0A1S4DTZ2 (Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 308 bits (790), Expect = 2.90e-95
Identity = 161/169 (95.27%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFR  PMA S+REFTVDDNDDDDDFDWEAAVKEIDVA LSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           A AETPASFPLSEENEKRGTSRQSTLHRFI+NAKF+KKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169

[Close]

BLAST of Cucsat.G5092 vs. ExPASy TrEMBL
Match: A0A1S3B2A7 (Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 308 bits (790), Expect = 2.90e-95
Identity = 161/169 (95.27%), Postives = 164/169 (97.04%), Query Frame = 0


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFR  PMA S+REFTVDDNDDDDDFDWEAAVKEIDVA LSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           A AETPASFPLSEENEKRGTSRQSTLHRFI+NAKF+KKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 169

[Close]

BLAST of Cucsat.G5092 vs. TAIR 10
Match: AT1G35530.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-27
Identity = 81/155 (52.26%), Postives = 101/155 (65.16%), Query Frame = 0


Query: 17  VDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETP-ASFPLSEEN 76
           ++  ++D +FDWEAAVKEID+A L   +++SS S H            TP A+ P++   
Sbjct: 7   IETIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSH-----------FTPLANPPITANL 66

Query: 77  EKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVE-DSVGLVDIDEEAAKTWIYPVN 136
            K    RQSTL +FI   + + +   V   V + G+ + D+  LV ID EAAKTWIYP  
Sbjct: 67  TKPPAKRQSTLDKFIGRTEHKPENHQV---VSECGVNDNDNSPLVGIDPEAAKTWIYPGF 126

Query: 137 VPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 170
           VPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 127 VPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAV 147

[Close]

BLAST of Cucsat.G5092 vs. TAIR 10
Match: AT1G35530.2 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-27
Identity = 81/155 (52.26%), Postives = 101/155 (65.16%), Query Frame = 0


Query: 17  VDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETP-ASFPLSEEN 76
           ++  ++D +FDWEAAVKEID+A L   +++SS S H            TP A+ P++   
Sbjct: 7   IETIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSH-----------FTPLANPPITANL 66

Query: 77  EKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVE-DSVGLVDIDEEAAKTWIYPVN 136
            K    RQSTL +FI   + + +   V   V + G+ + D+  LV ID EAAKTWIYP  
Sbjct: 67  TKPPAKRQSTLDKFIGRTEHKPENHQV---VSECGVNDNDNSPLVGIDPEAAKTWIYPGF 126

Query: 137 VPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAV 170
           VPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAV
Sbjct: 127 VPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAV 147

[Close]

BLAST of Cucsat.G5092 vs. TAIR 10
Match: AT1G36020.1 (BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 3.2e-07
Identity = 41/115 (35.65%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 17  VDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPLSEENE 76
           ++  ++D +FDWEAAVKEID+A L       + + HP                P++E   
Sbjct: 17  IETIEEDGEFDWEAAVKEIDLACL------KTTNAHP----------------PITENLT 76

Query: 77  KRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIY 132
           K    RQSTL +FI   + + +   V    +  G   D+  LV+ID EAAKTWIY
Sbjct: 77  KPPAKRQSTLDKFIGRTEPKPENHQVVS--ECGGNDNDNSLLVEIDPEAAKTWIY 107

The following BLAST results are available for this feature:

BLAST of Cucsat.G5092 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
I3XHK1	7.9e-27	52.87	DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FAN...	[more]
Q9UT23	1.2e-11	66.00	ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q7SDF3	1.6e-11	68.00	ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR2...	[more]
Q8BGE5	1.8e-10	71.11	Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV...	[more]
Q8IYD8	2.3e-10	71.11	Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2	[more]

BLAST of Cucsat.G5092 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06568.1	2.45e-100	94.58	Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa]	[more]
XP_031736812.1	2.71e-100	99.41	DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucumis sativus]	[more]
KAE8652234.1	5.12e-100	99.41	hypothetical protein Csa_022145 [Cucumis sativus]	[more]
XP_031736810.1	1.20e-99	99.41	DEAD-box ATP-dependent RNA helicase FANCM isoform X5 [Cucumis sativus]	[more]
XP_031736809.1	1.64e-99	99.41	DEAD-box ATP-dependent RNA helicase FANCM isoform X4 [Cucumis sativus]	[more]

BLAST of Cucsat.G5092 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPX7	1.07e-110	99.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G395690 PE=4 SV=1	[more]
A0A5D3C5Y0	1.19e-100	94.58	Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B2S2	2.60e-95	95.27	Fanconi anemia group M protein isoform X6 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S4DTZ2	2.90e-95	95.27	Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S3B2A7	2.90e-95	95.27	Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]

BLAST of Cucsat.G5092 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35530.1	1.3e-27	52.26	DEAD/DEAH box RNA helicase family protein	[more]
AT1G35530.2	1.3e-27	52.26	DEAD/DEAH box RNA helicase family protein	[more]
AT1G36020.1	3.2e-07	35.65	BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 133..169 e-value: 2.1E-9 score: 39.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 119..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR14025	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	coord: 25..169
IPR039686	FANCM/Mph1-like	PANTHER	PTHR14025:SF20	FANCONI ANEMIA GROUP M PROTEIN	coord: 25..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G5092.T1	Cucsat.G5092.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006281	DNA repair
molecular_function	GO:0043138	3'-5' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity