Cucsat.G4782 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G4782
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Reverse transcriptase domain-containing protein
Location	ctg1227: 3449925 .. 3450481 (+)
RNA-Seq Expression	Cucsat.G4782
Synteny	Cucsat.G4782

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATCCGCCAAGGGGACCCCATTTCTCCCTTTCTTTTCCTTCTAGTAAGTGAAGTTTTAGTAGCAATCATCAATAATCTTCACTTTAATGGGCAATATGAGGGTTTTCTTGTGGGTAAGGATTCAATCCATCTTCCCCTACTCCAATTTGCTGATGACACCCTACTTTTTTGCAAGTATGATGATCAAATGCTTCTCAAGTTGAAGGATGCCATTAGACTTTTTGAATGGTGTTCGGGGCAGAAGATTAATTGGGAGAAATCAGCTCTTAGTGGTGTAAATATAAATGATGATGAATTGTTTCAAACAGCAGCCCGACTTGGTTGCAAGGCAGAAAAATTACCTATTCTCTACTTAGGTCTTGATTACTACTTTTTTCCTTCATATCTTTATGAAAAAGATTTCCTATTTCCAAAAGAATGCCACTTTAGATATCAACACAAGAGGAGAGAGTCATCTAATTTGTTTACAATGAAGCACATAAATTAACCGAAATATCAGTTAAGTATTAGTATTCATAGAAGATTTACCTTTGGAAGATTTCCTCATCACTGAAAT

Coding sequence (CDS)

ATCCGCCAAGGGGACCCCATTTCTCCCTTTCTTTTCCTTCTATTGAAGGATGCCATTAGACTTTTTGAATGGTGTTCGGGGCAGAAGATTAATTGGGAGAAATCAGCTCTTAGTGGTGTAAATATAAATGATGATGAATTGTTTCAAACAGCAGCCCGACTTGGTTGCAAGGCAGAAAAATTACCTATTCTCTACTTAGGTCTTGATTACTACTTTTTTCCTTCATATCTTTATGAAAAAGATTTCCTATTTCCAAAAGAATGCCACTTTAGATATCAACACAAGAGGAGAGAGTCATCTAATTTGTTTACAATGAAGCACATAAATTAA

Protein sequence

IRQGDPISPFLFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGLDYYFFPSYLYEKDFLFPKECHFRYQHKRRESSNLFTMKHIN

Homology

[Close]

BLAST of Cucsat.G4782 vs. NCBI nr
Match: TYK31266.1 (hypothetical protein E5676_scaffold455G005560 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 1.24e-22
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 11  LFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGL 68
           +FL LKDAIRLFEWCSGQK+NWEKSA+SGVN+  D+L QTA  LGCK EKLPI+YLGL
Sbjct: 554 MFLKLKDAIRLFEWCSGQKVNWEKSAISGVNVEKDDLIQTANLLGCKVEKLPIIYLGL 611

[Close]

BLAST of Cucsat.G4782 vs. NCBI nr
Match: TYK02777.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.57e-21
Identity = 57/128 (44.53%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   IRQGDPISPFLFLL---------------------------------------------- 60
           IRQGDP+SPFLFLL                                              
Sbjct: 697 IRQGDPLSPFLFLLVSEVLGEIINKLHSNGQFEGFLVGKDMIHLPLLQFANDTLLFCKYD 756

Query: 61  ------LKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGL 76
                 LKDAIRLFEWCSGQK+N EKSALSGVN+ +D+L QTA  L CKAEKLPI+YLGL
Sbjct: 757 VQMLLQLKDAIRLFEWCSGQKVNREKSALSGVNVGEDDLIQTANLLDCKAEKLPIIYLGL 816

[Close]

BLAST of Cucsat.G4782 vs. NCBI nr
Match: KAA0068192.1 (mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis melo var. makuwa] >TYK21114.1 mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 1.23e-20
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 11 LFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLG 67
          + L L++AIRLFEWCS QK+NWEKS LSGVN+ +D L QTAAR+GCKAE LPI+YLG
Sbjct: 1  MLLKLREAIRLFEWCSDQKVNWEKSVLSGVNVPEDVLLQTAARIGCKAENLPIIYLG 57

[Close]

BLAST of Cucsat.G4782 vs. NCBI nr
Match: TYJ99950.1 (tryptophan--tRNA ligase [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.83e-18
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 11 LFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGLDY 70
          + L LK+AI+LF+WC GQK+NWEKSALSGVNI +D L QTA R+ CKAE LP++ LGL  
Sbjct: 1  MLLKLKEAIKLFKWCLGQKLNWEKSALSGVNIPEDILLQTAVRICCKAENLPVISLGLPL 60

Query: 71 YFFPSYLYEK 80
            +P    EK
Sbjct: 61 GGYPPLSLEK 70

[Close]

BLAST of Cucsat.G4782 vs. NCBI nr
Match: KAA0044242.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 3.85e-18
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 11 LFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGL 68
          + L LK+AI LFEWCSG K+NW+KS LSGVN+ DDEL   A +L CK EKLP LYLGL
Sbjct: 21 MLLKLKEAINLFEWCSGHKVNWDKSTLSGVNMGDDELLHMAGKLCCKVEKLPFLYLGL 78

[Close]

BLAST of Cucsat.G4782 vs. ExPASy TrEMBL
Match: A0A5D3E6J9 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005560 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 5.99e-23
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 11  LFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGL 68
           +FL LKDAIRLFEWCSGQK+NWEKSA+SGVN+  D+L QTA  LGCK EKLPI+YLGL
Sbjct: 554 MFLKLKDAIRLFEWCSGQKVNWEKSAISGVNVEKDDLIQTANLLGCKVEKLPIIYLGL 611

[Close]

BLAST of Cucsat.G4782 vs. ExPASy TrEMBL
Match: A0A5D3BTI0 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00360 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.60e-22
Identity = 57/128 (44.53%), Postives = 65/128 (50.78%), Query Frame = 0


Query: 1   IRQGDPISPFLFLL---------------------------------------------- 60
           IRQGDP+SPFLFLL                                              
Sbjct: 697 IRQGDPLSPFLFLLVSEVLGEIINKLHSNGQFEGFLVGKDMIHLPLLQFANDTLLFCKYD 756

Query: 61  ------LKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGL 76
                 LKDAIRLFEWCSGQK+N EKSALSGVN+ +D+L QTA  L CKAEKLPI+YLGL
Sbjct: 757 VQMLLQLKDAIRLFEWCSGQKVNREKSALSGVNVGEDDLIQTANLLDCKAEKLPIIYLGL 816

[Close]

BLAST of Cucsat.G4782 vs. ExPASy TrEMBL
Match: A0A5D3DC06 (Mediator of RNA polymerase II transcription subunit 8 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00890 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.94e-21
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 11 LFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLG 67
          + L L++AIRLFEWCS QK+NWEKS LSGVN+ +D L QTAAR+GCKAE LPI+YLG
Sbjct: 1  MLLKLREAIRLFEWCSDQKVNWEKSVLSGVNVPEDVLLQTAARIGCKAENLPIIYLG 57

[Close]

BLAST of Cucsat.G4782 vs. ExPASy TrEMBL
Match: A0A5D3BJF3 (Tryptophan--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00850 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.37e-18
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 11 LFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGLDY 70
          + L LK+AI+LF+WC GQK+NWEKSALSGVNI +D L QTA R+ CKAE LP++ LGL  
Sbjct: 1  MLLKLKEAIKLFKWCLGQKLNWEKSALSGVNIPEDILLQTAVRICCKAENLPVISLGLPL 60

Query: 71 YFFPSYLYEK 80
            +P    EK
Sbjct: 61 GGYPPLSLEK 70

[Close]

BLAST of Cucsat.G4782 vs. ExPASy TrEMBL
Match: A0A5A7TLN3 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G006040 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.87e-18
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 11 LFLLLKDAIRLFEWCSGQKINWEKSALSGVNINDDELFQTAARLGCKAEKLPILYLGL 68
          + L LK+AI LFEWCSG K+NW+KS LSGVN+ DDEL   A +L CK EKLP LYLGL
Sbjct: 21 MLLKLKEAINLFEWCSGHKVNWDKSTLSGVNMGDDELLHMAGKLCCKVEKLPFLYLGL 78

The following BLAST results are available for this feature:

BLAST of Cucsat.G4782 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G4782 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31266.1	1.24e-22	77.59	hypothetical protein E5676_scaffold455G005560 [Cucumis melo var. makuwa]	[more]
TYK02777.1	1.57e-21	44.53	Transposon TX1 uncharacterized [Cucumis melo var. makuwa]	[more]
KAA0068192.1	1.23e-20	71.93	mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis melo v...	[more]
TYJ99950.1	2.83e-18	60.00	tryptophan--tRNA ligase [Cucumis melo var. makuwa]	[more]
KAA0044242.1	3.85e-18	67.24	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G4782 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E6J9	5.99e-23	77.59	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BTI0	7.60e-22	44.53	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3DC06	5.94e-21	71.93	Mediator of RNA polymerase II transcription subunit 8 isoform X2 OS=Cucumis melo...	[more]
A0A5D3BJF3	1.37e-18	60.00	Tryptophan--tRNA ligase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TLN3	1.87e-18	67.24	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Cucsat.G4782 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G4782.T7	Cucsat.G4782.T7	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0000166	nucleotide binding