Cucsat.G4533 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G4533
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Trafficking protein particle complex subunit
Location	ctg1216: 185262 .. 193432 (-)
RNA-Seq Expression	Cucsat.G4533
Synteny	Cucsat.G4533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAGATGTGCTATTTCTCAAAATGTTATATTAAATTTTATCATTCTCACGTTATTTTTATTATTATTTTTGTTTTTAGTTTTGCCTTTTTCCCGAAATTTGGAATCCACGAAGGACGAAAATGGTATTTTGAGGAGTTTGTTTCTCTGCTCCAAAGTCTTTCTGCACCGGAACCGCCCTTACCATCGGCGTCGGATACACTCTTCGCTTTCCGAATCAATCCTCCGGTACTTAAGTCTCCGGACTACACTTAACTATGTAATATTCCTTCATTAGGGTGTCAAGTTTTTTCATTTGCTGTAAAGACAGTAATGAAATTCCCCATTTTGATCTCCATCAATGAACGCTTCGCAAGGCTCAGAATTTTACTCTTGGGCTATGTTGGCGATTTGCCGATTTGGGTCATTCAGCCCAAAATCTACACAAGACTAACTCTATCCTTCACTTATGTAGGGCCAATCAGTACAACGTTTTCGATAACTTTCCTTTGTGCTCAGCTCACAATTCAGATCCATCATGCCGACCGCTGGCCCTCGATCTGGTGATGCAATCTTCGCTAGTGTTGAGCGAGTGGTAAGCTTCTCAACTACTAGTCTCTCTTTTATTTTTTATTTTTGTTTCTGCTGTTTGGTTTCTGAGGAATTTTAAGGAAATATGAGGGAAGAGGGAGGAAATTTTACAGATGTATTCGAAAGTACTTTTTTTAGGTTTTTTTTAATTTCATTTATGTTACTGGGTCATCTTCTATTGATAAGAAGCTAAAGGTGAATTGATGTAGAATGCGGAGCTGTTTACCTTGACTTATGGAGCGACTGTCCGTCAATTGCTTACGGATCTAGAGGAGGTTGAGGAGGTTAACAAGCAGCTCGATCAGATGTAATTTTACTCCACTTCTTCGTGCTTTTTTATCTGATTTCTTTTTCATAGCTTAAAATTCTGCTTTGTCCAGAGATAAATTGTGTCTTTTTGTCTGAATTAGCTATTTGGTTTTGTCTACGCTTTTTTATTTCTTTGTTGTTTCTTGACTCTTATCTTTGTGTGATATCATAGGAAGGCTAAGACAATTTGAGGACATGTATAACAAAATTGTTATACCTCTGTGGTGTACCAAGTTTTGTACATTATGGAAATTTTTTTACATTCCTTCTATAATAGTTTTACAGAAGCATTGTTATGAAATGTGCTTGAACTTTAGCTGGAGAGTTTAAAATTAGATGCATGAAAACCACTATGGACTGACCTAATTGTGTTGAGGCATGTGAGAAAAATGAAGGAACGTGGAGAGATTAGGTTCAAACTTCATAATGGCCACTTACCTAAGACAAAATCCTACAAGTCTCTTTATAACAAAATGTTGTAGAGCCAAAACTGCTGTCCAGGTATGATGGAATTATATTCTCCTATTTAGTTCTTTCATCTTCTGCACAAAAGTTGGTTTTTCATAAAAAAGAAATAGTGTGCATGACAGGTAGATAGTAGGCATATTATGCTTTTCAATACTTCCTATGTTCATTGATAAACTACTAAAAACTCTTTAGTGCTAAAACTTAATGCCCTTGGGATAAAAGCTCTTATGTGGAGCTTGTGGGTGCAAAGGAATAGGAGAATTTTCAAAGATAAGTCTTCTTTTCTTGATTTATTTTTGTGCTGTTTTCAGTTAAATACTTCTTTGTGGTGTCATAACTATAGTAAATTCTTTTGTAATATTCCTATTTCCTTGATTCATGTGGATTGCAATCTATTTGTAACTTGTAAGTAGTTCCTTGGGGAGGGGCTTTCCCTCCACCCAACCCTTAGGATGTTAGGTTTTGCCTTTTTGAATGAATACTACTTGATATTTCCACCCCCCTCCCTTCCCCCGCCCCCCCCCCCCCCCCCAAAAAAAAAAACCTACAATATTGAAGTCAGGCTGATCGATGAGTTTCAGTGATCTGACTAATTGTTTTTCAGGGGTTATAATATTGGAATCAGGCTGATTGATGAGTTTCTAGCAAAATCTAATATCTCTAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTAGATTGTAGTTTAATACAGATCCCAAAGTATTTTATTCTTCCTGAAAACCATCGCGAGGCTGTTGAAGTGCCCTGTCATCTCCCATTCACAACATGATTTTCACATATTCATATTAGTTAGATGGGCACTGCTATTTTTGGCAGTTGGCACTATGTGAAATTTTGACCTGCAATTGAGGGGCAGCTTCCGAGTGCAGTCACAGTGTATAAATTTTGATGCAATAGGCTTTTTGCAGCTAGCTAGAGTGGTTCTATTCATGTCTATTTGAATGTTTTATACCATTATGAGACAGGAGTTCTCTTGTTTGCAGGATTTTGATCATAATGTTAGACGCTTGGTGCATTTTACCTATGACTATGAGTGTGGTCCTTTGTAACAACAGACAAAAATAGAAGTTTTGTTGGGGGATTGTGTGAAGAGCATGGTAGATTTGTTAGATAATATGTGAAGGCCTTAGCCACAATTTTATTTATCAACCGTGGGAAAGAATTTGGGAGCTCCCCAATCTCTCCACACTTCTCTAATGAGAGTATACCAAAATCATTTAGCCAAAAAGATACCCTTACCCTCCCACTCAAGACACTTAAAGTAATTGCTCAGAGAAATAACAAAATACTTCTCCCCACTCTAACAATCACATTCCCAAGGGCCCACACAAATGGAAAACTACCAACTAACTCTCAATCATTCTTTCTTCTTCCTATTCTTGTCTCTACGGGAATACACCTTTACTCTGGTATCATTACTCGTCCCCCAAAGAGCCACCTTGTCCTCAAGGTGGAATTCAGGAAACTGTTCTTGAATAAGAGTGGCTTGTTCCCATGTTGCACTTTCAAGTGTACCCTCACTCCAACCGATCAAAACTTCTAAGTTGTCCTCCTTTTCTATTGTTTTGTGAACTCCCAACACTTCTACCGGACATAATTGCATAGACAAATCAGCAGCCAAATCTTTTGGAATTGGGAACAGTGGCCTGTTTGAACTGCGAAGAACAAAAACATGAAAGACCGGTATGCAAATGGACCAATTTGTGCCATAATCATAAATGGACCAATGAATCTTGGGGCCAATTTGGGGTGCTTAAAACGGCTGAGAGGACTGTCGGTAAGGGCGTAACTTCACATAAACCCAATCATGTACCTCCCTTCTTTTAGCATTGGCATATTTGACCATTCGCTGCTGTGCCTTTAGTAAATTGGCCTTCAATATGCCCAGAATTTCATTTCTTTCTTTCATCAAATGGTCTACTTCATTCATCAGACTCGAGCCCTTCACATATGGTATTATAGGGGGGGTGGCTGACCATAGAGAGCCTCGAAGGGGGTCATCAATGTGGCTGTATGGACAGTTGTGTTATAGCTCAATTCAGCCCAAGCTAGCCATTTAGCCCATTGTTTAGGTGTGTTCATAGCAAAACACCGTAGATACGTCTCCACCCCTCGATTGACAACTTCAGTTTGACCATCCGGTTGGGGGTGGTAAGTGGTGCTTCGTCTCAATTGAGTTCCCAACAACCGCCACAACTCTTCCCAAAGTAGACTTGTGAAAATACGATCACGATCCGACACTATACTTCGAGGGCATCCATGCAAATGAATAATCTTTCGGATAAAAACAGCAGCTATCACTTTTGCACCAAATGGATGTTTAAAGAGAATGAAATGTGCATACTTGGTAAGACGATCTACAACTACCAATATGACATCGTAACCCTCGGATTTGGGGTGACTCTCAATAAAATCCATACTAATATCTTCCCATACACGGTCTGGAATGGGTAATGCTTGAAGGAGACTGGCCAGAGTTAAAGACAAATATTTGGCTTGCTGACACACCTACATTCAGCAACATAGGTGCGGATATGTGCTTTCATACCTCGCCAATAGACCTCCCTTGCTATCTTTTGATATGTTTTCAACGCACCATGATGGCCCCCTATCGGGCTGTTATGGAATTCAGCTAATAATAAAGGAATAGTAGGTGAATCCTCTGGAAGAACCAAATGACCATGAATGTGAAAGCATAGAACCTCTCATTGTAGTGAATATCCATCTGGGGCTGGCTGTCCATTTATCAAGGATAATCGATTACTGTTAAAAGATTCATTTCCAGCCACTTGATCAATGAAAACCAAAGGATTTAGCCTGCCCACAACACTTATGAGGTCCAATTCACATATCGGTGGTAATCTCGATAAGGCATCGGCCGCTTTGTTCTCCAATCCTTTCTTGTACTTGATCACAAAATCATACCCCAATAGTTTAGCGATCCATCTCTGATATTCTCCCTCGATTGCCTGTTGTTCAAGAAGAAACTTCAAACTTTTCTGATGTGTACGCACCACAAAAGGCTTATCCAATAGATATGGTCACCATTTTTTAACAGCCAGTACTATGGCCATAAGCTCCCGTTCATAAACAGCTTTAAACCTATGGGTAATAGGTAAAGCTTGACTGAAAAAGGCCACTGATTGTTGATTCTACATTAGGACAGCCCCAATTCCCACTCCCGAAGCATCAGTTTCCAGCACAAAACTTTGTGAAAAATCAGGAATACCTAGCACCGAGAAAGACATCATTGCTGACTTTAACTGCTGAAATGCGTTCTCGGCCGTCTCATTTCACTTAAAGTTACCTTTCTTTAACAATTGTGTCAAGGGCAGTGCAATAGAGCGGTAGGTTGCAACGAATTTTCGATAATACCTTGTTGCCCCAAGAATCCACATAGCTCCTTCACGTTCTTGGGTGCTGGCCATTCAACCATAGCTTCTATTTTTGTTGGATCCGTTGCCACCCCCTCTGAAGAGATAATATGGCCCAAGTATTCAATTCAGTCTAGTCTACCGCAAATTGGCATTTTTTAAAGTTTGCTACCAGTTGACGAGCTACTAGAGTTTCCAAAACCATAGCCAATTGGTGCAAATGCTCATCCAAGTACTTGCTGTAAATTAAGATGTCATCGAAGAAAACCAAAACAAACTTGCGTAAATATGGACAAAGAACATCATTCATGATTGGAATGTTGCCGGAGCATTCTTCAACCCAAACGGCATAACAAGGAATTCATAGTGCCCCTTGTGGATTTGAAACACTGTTTTATGAACATCGACCGATCGCACCCAAATTTGATGATAACCTGACTTTAAATCAATTTTAGAAGTTATGGTTGCCCCAAATAATTCATCTAACAGTTCATCAACAACAAGAATCGGATACTTATCTGGTATAGTGGCAAGGTTCAGTGCTCGATAATAAATGTAAAATCGTCAGCTACCGTCTTTTGACCCGATCTGATTCCTTCGGTGAAGTAATCGTCGTGGACGAATACGACGAATTTTGGCTAGGGTTAATTGTAATCAGTCTTGATGTCGCGACCCAAACCGATGCCTTTGACCTGGTTTTACTTCCTGACCCTTTGGCCCACTACTCGGCATTTTAATTGATAAATTAGGGTTTCCACTTGCCCCATGAATTCTCTTCAATTGGACCGTTTGATCATCTTCAATTACTTGGACCATTAACATTTTAGCCTCTAGGCCCACTGGATTCAATTTTCGGATCTCACTTTGGGTCTCTTCCTTCAGCCCACACACAAACTTACTTTCTAGGCTGCGTCACTCATATCTTTAAGACCGGCTGAAAATTGTTCAAACCACCGCCAGTAACCCCTCATGGTGGTCTTCTGCTGTAATTTAATAAACCTTACCTGTTTATCTCCTTGGTCGGACGACTTGAATCTCACCCACAGAAGCATTCAGAATTCTGCCCAGTTGTTGTCTTGCAGATTTTCTTTCTATCCTCCTTCCATTGATACCAATCCAAAGCTTCCCCTTCCAAGCACAGAACCGCCGCATCCAGCTTATCTCTCTCCGTCAATCTATTCACCACAAAATAGCGCTCCACACGATGTAGCCATCCATCCACGTTCCCTTCTTCATCCCCTTTAAATATTGGCACCTCCAGTATTCGTAGCCTCATGTCGGAAAGGAGTATCTCATGGATATTTGGTGCGCATGGTACTCCAACTCCCTCATCCACCATCGGGTTAGTTTCTTGTTCACTTTTTTCTTCATGAACTTGTTCCTTGTTCATTATTCCCTTTCCCTTGTCTGTAATAGTTTTTTCACTAGATGTGGATCCTTTTGAAGCACTTCCCATCACTCACATCCCTTGTATCAACAATTTCATATCCTCACTCAATTTTGACTGATTATTCTCAATCTTTTGTTCGGCCATTGTCCTTCGAACTTCTGCTTCCGCAAATTGTATTTCCATCTTCCTTTCAAATGTTAATGGTTCATCTGCTTGTAAAAATTTTGCTTCTACTCTACTTTCCATTTCAGTCATCCCTGTGGTTACTCCCTCTAAATTTTCTTCCTCCCTCTAAATTTTCTTCCTGATCAATTACCTTAGCTTCCATCTTACCAACCATACCAAGAAAGATGGCTCTTATACCAAAATTGTGAAGGCCTTAGCCACAATTTTATTTGTCAACTGTGGGGAAGGATTTGAGAGCTCCTCAATATCTCCACACTTCTCTGATGAGAGTCTATACCGAAATCATTTAGCCAAAAAGACGATACCCTTATCCTCCCACTCAAGACACTTGATGCTCAGAGAACTAACAAAATACTTGGCCCCACTCTAACAAACACATTCCTAAGGGTCCACACAAATGAAAAACTACCAACTAACTCTCAATCATTCTTTCTTCTTCCTATTCTTGTCTCTACGGAGATATACCTTTACTATGGGGGGTCTATCATAATAGTGGTGCCCTGAATAGGCATTCGGATTTATCTGGAATTTTGGCTTACAATATCTGGTAAATGAAAGTTGAGGCCTTTTGAAGTGTGATCTTAAATTCTTTTCCATTTTTTATTAGGTTGGTTTAAAGATGTTTTTGGGAGTGAATGCAACGGTGACCAACTGGGATGCTGAAGGCACATGCTGCAGCATTGTTCTGGAGGATAATCCATTAGTAGACTTTGTTGAACTTCCTGATACTTGCCAAGGTCTCCATTACTGCAACATTTTAAGTGGAGTAATTAGAGGAGCACTTGAGATGGTGAGTTATTTGAATATCCTCTATTTTCTATAATTTTGCTTGTTATCATCTTCAGAATTGTAATTAGACTTACAAGACAGATAGACCAAGGCTTGTTAACATCTGTCATTTTTGTACATTATATGCTTAAAAAATGAGTTTTATGTATTTTTCTCTGAAAATTTATTTAAGTATATTCGATACATTTCTAATCTTGGACCTATAGTGACTATAAAATTAGTGTCTAACACGTATATTGTCCTAAACAAGCATTCGATGTGTCCAGCTGTTGAACATGCTACCAAAAGATGTTTGTGTTTCTTAATCATCATCATGGCTATTTTAGATTTTGTTCTTTTTGAGAGATATATTTAATATATTTGATACACAATTGACATTTTAGAGATTTATTGATGTAAAATATAAAATTTGAAAGTTCAAGAATGATACAAATTAAAAGTTCTTATTCGACACATTCTAAAATTCAACGACCCAATAGACATAAACCTAGAAATGTGGGGACTTAACGACCTTTTAACCACACTTCTCCCTTTATGTTATCAATTCGTAGGTATGAATTTAGTTTATTTTTCTGATTGTGGTATGGTGCTTGAATCAGGTGTCAATGAAAACAGAAGTAACATGGCTACGGGACATGCTGAGAGGAGACGACAGTTTTGAATTGCAAGTAAAATTGCTGAAGCAAGTCCCTGAAGAATACCCTTATAAAGACGATGAATGAAATCACCCACCAAAGTAACTCTTAGTTTCACGTCATTTCCTTCCGTCTTGTTTTTTTCTTTTTGTTCCGTTCATTTGTTCCAGGAAGAGATAGTTACGTTTCTAATTCCTTCAACCATCTAACATTGTAATCAAAGTTATATTATATATATGTTTTCTATTGTGATGGATTAAAATGAATTTATATGGTAAAATAATTTAGAATGAATAATAGTCCGTGGCCGGACTGCATAGGATTGCATGGTTTTAACTTTCATCTGTAGTTCTACGGCAGTAGTGTTTTCGTTAGAATAGTTGTGATTGTGCTGTGAGAATACTTGAGATGTGTGTGCCGAGTTTTCTCCAAACACATTATTGTAGAAAAAAATTCTTTTTTCTTGGTTCGTAGTTTTCTTTCCTATAAATTAAGGAAATAAT

Coding sequence (CDS)

ATGGGTTATAATATTGGAATCAGGCTGATTGATGAGTTTCTAGCAAAATCTAATATCTCTAGATGTGTGGACTTCAAAGAGACAGCTGATGTGATTGCAAAGGTTGGTTTAAAGATGTTTTTGGGAGTGAATGCAACGGTGACCAACTGGGATGCTGAAGGCACATGCTGCAGCATTGTTCTGGAGGATAATCCATTAGTAGACTTTGTTGAACTTCCTGATACTTGCCAAGGTCTCCATTACTGCAACATTTTAAGTGGAGTAATTAGAGGAGCACTTGAGATGGTGTCAATGAAAACAGAAGTAACATGGCTACGGGACATGCTGAGAGGAGACGACAGTTTTGAATTGCAAGTAAAATTGCTGAAGCAAGTCCCTGAAGAATACCCTTATAAAGACGATGAATGA

Protein sequence

MGYNIGIRLIDEFLAKSNISRCVDFKETADVIAKVGLKMFLGVNATVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQGLHYCNILSGVIRGALEMVSMKTEVTWLRDMLRGDDSFELQVKLLKQVPEEYPYKDDE

Homology

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BLAST of Cucsat.G4533 vs. ExPASy Swiss-Prot
Match: Q86K94 (Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=trappc3 PE=3 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 9.7e-24
Identity = 53/78 (67.95%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 9  GDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKS 68
          G+ +F  VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS
Sbjct: 9  GNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKS 68

Query: 69 NISRCVDFKETADVIAKV 87
           I RC DF ETA+VIAKV
Sbjct: 69 GIGRCSDFIETAEVIAKV 86

[Close]

BLAST of Cucsat.G4533 vs. ExPASy Swiss-Prot
Match: Q5ZI57 (Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPPC3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.9e-22
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
          +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12 KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77 KETADVIAKV 87
          +ETADVIAK+
Sbjct: 72 RETADVIAKI 81

[Close]

BLAST of Cucsat.G4533 vs. ExPASy Swiss-Prot
Match: O55013 (Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trappc3 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-21
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
          +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77 KETADVIAKV 87
          +ETADVIAKV
Sbjct: 72 RETADVIAKV 81

[Close]

BLAST of Cucsat.G4533 vs. ExPASy Swiss-Prot
Match: Q5U1Z2 (Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=Trappc3 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-21
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
          +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SN+ RC DF
Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDF 71

Query: 77 KETADVIAKV 87
          +ETADVIAKV
Sbjct: 72 RETADVIAKV 81

[Close]

BLAST of Cucsat.G4533 vs. ExPASy Swiss-Prot
Match: O43617 (Trafficking protein particle complex subunit 3 OS=Homo sapiens OX=9606 GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-21
Identity = 47/70 (67.14%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 17 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNISRCVDF 76
          +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SN+ RC DF
Sbjct: 12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDF 71

Query: 77 KETADVIAKV 87
          +ETADVIAKV
Sbjct: 72 RETADVIAKV 81

[Close]

BLAST of Cucsat.G4533 vs. NCBI nr
Match: XP_008454543.1 (PREDICTED: trafficking protein particle complex subunit 3 [Cucumis melo] >XP_011651467.1 trafficking protein particle complex subunit 3 [Cucumis sativus] >KAA0046487.1 trafficking protein particle complex subunit 3 [Cucumis melo var. makuwa] >KGN57989.1 hypothetical protein Csa_009665 [Cucumis sativus] >TYJ97725.1 trafficking protein particle complex subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (429), Expect = 4.82e-51
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAKV
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKV 86

[Close]

BLAST of Cucsat.G4533 vs. NCBI nr
Match: XP_022976584.1 (trafficking protein particle complex subunit 3-like [Cucurbita maxima])

HSP 1 Score: 169 bits (428), Expect = 6.83e-51
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAK+
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKI 86

[Close]

BLAST of Cucsat.G4533 vs. NCBI nr
Match: XP_022935837.1 (trafficking protein particle complex subunit 3-like [Cucurbita moschata] >XP_023535136.1 trafficking protein particle complex subunit 3-like [Cucurbita pepo subsp. pepo] >KAG7024898.1 Trafficking protein particle complex subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169 bits (428), Expect = 6.83e-51
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAK+
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKI 86

[Close]

BLAST of Cucsat.G4533 vs. NCBI nr
Match: XP_022941300.1 (trafficking protein particle complex subunit 3-like [Cucurbita moschata])

HSP 1 Score: 167 bits (423), Expect = 3.93e-50
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAKV
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKV 86

[Close]

BLAST of Cucsat.G4533 vs. NCBI nr
Match: KAG7015216.1 (Trafficking protein particle complex subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167 bits (423), Expect = 3.93e-50
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MP AGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPPAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAKV
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKV 86

[Close]

BLAST of Cucsat.G4533 vs. ExPASy TrEMBL
Match: A0A5A7TX50 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00240 PE=3 SV=1)

HSP 1 Score: 169 bits (429), Expect = 2.33e-51
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAKV
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKV 86

[Close]

BLAST of Cucsat.G4533 vs. ExPASy TrEMBL
Match: A0A0A0LAM3 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_3G419290 PE=3 SV=1)

HSP 1 Score: 169 bits (429), Expect = 2.33e-51
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAKV
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKV 86

[Close]

BLAST of Cucsat.G4533 vs. ExPASy TrEMBL
Match: A0A1S3BYU9 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103494932 PE=3 SV=1)

HSP 1 Score: 169 bits (429), Expect = 2.33e-51
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAKV
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKV 86

[Close]

BLAST of Cucsat.G4533 vs. ExPASy TrEMBL
Match: A0A6J1INY4 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111476937 PE=3 SV=1)

HSP 1 Score: 169 bits (428), Expect = 3.31e-51
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAK+
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKI 86

[Close]

BLAST of Cucsat.G4533 vs. ExPASy TrEMBL
Match: A0A6J1F6Q0 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111442625 PE=3 SV=1)

HSP 1 Score: 169 bits (428), Expect = 3.31e-51
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 86
          IDEFLAKSNISRCVDFKETADVIAK+
Sbjct: 61 IDEFLAKSNISRCVDFKETADVIAKI 86

[Close]

BLAST of Cucsat.G4533 vs. TAIR 10
Match: AT5G54750.1 (Transport protein particle (TRAPP) component )

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-37
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60
          M   GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQMGYNIGIRL
Sbjct: 1  MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRL 60

Query: 61 IDEFLAKSNISRCVDFKETADVIAKV 87
          IDEFLAKS +SRCVDFKETA++IAKV
Sbjct: 61 IDEFLAKSGVSRCVDFKETAEMIAKV 86

[Close]

BLAST of Cucsat.G4533 vs. TAIR 10
Match: AT5G54750.2 (Transport protein particle (TRAPP) component )

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-34
Identity = 75/99 (75.76%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1  MPTAGPRSGDAIFASVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQM-------- 60
          M   GPRSGDAIF+S++RVNAELFTLTYGA VRQLLTDLEEVEEVNKQLDQM        
Sbjct: 1  MAPVGPRSGDAIFSSIDRVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMYSSSTIYV 60

Query: 61 -----GYNIGIRLIDEFLAKSNISRCVDFKETADVIAKV 87
               GYNIGIRLIDEFLAKS +SRCVDFKETA++IAKV
Sbjct: 61 DSLPWGYNIGIRLIDEFLAKSGVSRCVDFKETAEMIAKV 99

The following BLAST results are available for this feature:

BLAST of Cucsat.G4533 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86K94	9.7e-24	67.95	Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum OX=44...	[more]
Q5ZI57	6.9e-22	68.57	Trafficking protein particle complex subunit 3 OS=Gallus gallus OX=9031 GN=TRAPP...	[more]
O55013	2.0e-21	68.57	Trafficking protein particle complex subunit 3 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q5U1Z2	2.0e-21	68.57	Trafficking protein particle complex subunit 3 OS=Rattus norvegicus OX=10116 GN=...	[more]
O43617	5.9e-21	67.14	Trafficking protein particle complex subunit 3 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]

BLAST of Cucsat.G4533 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454543.1	4.82e-51	100.00	PREDICTED: trafficking protein particle complex subunit 3 [Cucumis melo] >XP_011...	[more]
XP_022976584.1	6.83e-51	98.84	trafficking protein particle complex subunit 3-like [Cucurbita maxima]	[more]
XP_022935837.1	6.83e-51	98.84	trafficking protein particle complex subunit 3-like [Cucurbita moschata] >XP_023...	[more]
XP_022941300.1	3.93e-50	98.84	trafficking protein particle complex subunit 3-like [Cucurbita moschata]	[more]
KAG7015216.1	3.93e-50	98.84	Trafficking protein particle complex subunit 3, partial [Cucurbita argyrosperma ...	[more]

BLAST of Cucsat.G4533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TX50	2.33e-51	100.00	Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0LAM3	2.33e-51	100.00	Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]
A0A1S3BYU9	2.33e-51	100.00	Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1INY4	3.31e-51	98.84	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1F6Q0	3.31e-51	98.84	Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Cucsat.G4533 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54750.1	2.7e-37	87.21	Transport protein particle (TRAPP) component	[more]
AT5G54750.2	1.6e-34	75.76	Transport protein particle (TRAPP) component	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007194	Transport protein particle (TRAPP) component	PFAM	PF04051	TRAPP	coord: 1..120 e-value: 6.4E-27 score: 94.1
None	No IPR available	GENE3D	3.30.1380.20	Trafficking protein particle complex subunit 3	coord: 1..134 e-value: 2.3E-68 score: 231.1
None	No IPR available	PANTHER	PTHR13048:SF4	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT	coord: 1..135
IPR016721	Bet3 family	PANTHER	PTHR13048	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3	coord: 1..135
IPR016721	Bet3 family	CDD	cd14942	TRAPPC3_bet3	coord: 1..123 e-value: 4.90625E-80 score: 230.86
IPR024096	NO signalling/Golgi transport ligand-binding domain superfamily	SUPERFAMILY	111126	Ligand-binding domain in the NO signalling and Golgi transport	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G4533.T4	Cucsat.G4533.T4	mRNA
Cucsat.G4533.T1	Cucsat.G4533.T1	mRNA
Cucsat.G4533.T2	Cucsat.G4533.T2	mRNA
Cucsat.G4533.T3	Cucsat.G4533.T3	mRNA
Cucsat.G4533.T8	Cucsat.G4533.T8	mRNA
Cucsat.G4533.T9	Cucsat.G4533.T9	mRNA
Cucsat.G4533.T5	Cucsat.G4533.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
cellular_component	GO:0033106	cis-Golgi network membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0030008	TRAPP complex