Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTCATTCTCCCAGTTTGATGTTCTTCTTCCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCCTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACGTACCATAGTAATTTCTACTAATGTGTTTTGTTTGTTTGTGATTTTTATATTTAGAGGTGAACTTCTGGATTCCATGAAGTTACCGAAACAAACTACAAATATACACACAAGTATGAACGATTCTTTTGTGGGTGAGAGAGTCGGTTTACATTTCACGTTTGTAGAAAAGATATTGAAGAAATCCAAACAAGAAGTATTTTTAAATTTGTTATATGAACACTATTCATTAGGCAATCCAAACAAGAATAAAGGATACAACTCCTT
Coding sequence (CDS)
AATTCATTCTCCCAGTTTGATGTTCTTCTTCCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATAACCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCTATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGAGGTGAACTTCTGGATTCCATGAAGTTACCGAAACAAACTACAAATATACACACAAGTATGAACGATTCTTTTGTGGGTGAGAGAGTCGGTTTACATTTCACGTTTGTAGAAAAGATATTGAAGAAATCCAAACAAGAAGTATTTTTAAATTTGTTATATGAACACTATTCATTAGGCAATCCAAACAAGAATAAAGGATACAACTCC
Protein sequence
NSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRGQKWKRGELLDSMKLPKQTTNIHTSMNDSFVGERVGLHFTFVEKILKKSKQEVFLNLLYEHYSLGNPNKNKGYNS
Homology
BLAST of Cucsat.G4408 vs. NCBI nr
Match:
KGN49708.1 (hypothetical protein Csa_018344 [Cucumis sativus])
HSP 1 Score: 302 bits (773), Expect = 5.58e-102
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 NSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHC 60
NSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHC
Sbjct: 5 NSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHC 64
Query: 61 SSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYL 120
SSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYL
Sbjct: 65 SSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYL 124
Query: 121 VAEPVYGVPIIVETESGRGQKWKR 144
VAEPVYGVPIIVETESGRGQKWKR
Sbjct: 125 VAEPVYGVPIIVETESGRGQKWKR 148
BLAST of Cucsat.G4408 vs. NCBI nr
Match:
KAA0054146.1 (AUX/IAA protein [Cucumis melo var. makuwa])
HSP 1 Score: 195 bits (495), Expect = 3.64e-60
Identity = 99/125 (79.20%), Postives = 104/125 (83.20%), Query Frame = 0
Query: 20 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPL 79
MLKATKKKLKGLWSKMKKK KPN+TQTN YQYCC CHCSSS+H H+Q PSAPPLP
Sbjct: 1 MLKATKKKLKGLWSKMKKK----KPNKTQTNCYQYCCSCHCSSSSHLHHQ--PSAPPLPP 60
Query: 80 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRG 139
WLN+ PTFLPP TQSQFEHPD AD MV NQWSYQQYLVAEPVYGVPIIV+TES R
Sbjct: 61 WLNEDPTFLPPPTQSQFEHPDRADGMV----TNQWSYQQYLVAEPVYGVPIIVKTESRRD 115
Query: 140 QKWKR 144
QKWKR
Sbjct: 121 QKWKR 115
BLAST of Cucsat.G4408 vs. NCBI nr
Match:
XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])
HSP 1 Score: 92.4 bits (228), Expect = 6.39e-20
Identity = 61/119 (51.26%), Postives = 73/119 (61.34%), Query Frame = 0
Query: 20 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPL 79
MLKA KKKLK WS+ KK+ K PN+ + CC CHCSS+ QPSAPPLP
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPNPNDFPPPCH--CCTCHCSSAI------QPSAPPLPP 60
Query: 80 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 138
WL+D PPS EHP+ A E+ PLVA YQ Y+ +PVYGVPIIV+T+S R
Sbjct: 61 WLDDR--IFPPS-----EHPEEA-EIAAPLVAAPL-YQHYMDPDPVYGVPIIVQTDSRR 101
BLAST of Cucsat.G4408 vs. NCBI nr
Match:
KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 91.3 bits (225), Expect = 1.98e-19
Identity = 62/121 (51.24%), Postives = 74/121 (61.16%), Query Frame = 0
Query: 20 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQ--YCCICHCSSSTHQHNQQQPSAPPL 79
MLKA KKKLK WS+ KK+ K PN+ +CC CHCSS+ QPSAPPL
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAI------QPSAPPL 60
Query: 80 PLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESG 138
P WL+D F PP EHP+ A E+ PLVA YQQY+ +PVYGVPIIV+T+S
Sbjct: 61 PPWLDDR-IFPPP------EHPEEA-EIAAPLVAAPL-YQQYMDPDPVYGVPIIVQTDSR 105
BLAST of Cucsat.G4408 vs. NCBI nr
Match:
XP_038684254.1 (uncharacterized protein LOC119984405 [Tripterygium wilfordii])
HSP 1 Score: 70.5 bits (171), Expect = 2.60e-11
Identity = 54/125 (43.20%), Postives = 66/125 (52.80%), Query Frame = 0
Query: 24 TKKKLKGLWSKMKKKNKKKKPNETQ----TNSYQYCCICHCSSSTHQHNQQQPSAPPLPL 83
T KKLK WSK K+K ++K +E + S+ +CC H SSST QPSAPPLP
Sbjct: 4 TMKKLK-FWSKKKRKKRRKTQDEPYYYPPSTSFHHCCCPHSSSST------QPSAPPLPS 63
Query: 84 WLND-APTFLPP----STQSQFEHPDTADEM-------VEPLVANQWSYQQYLVAEPVYG 132
WL AP L P S Q++ + A E + AN SYQQYLV PVYG
Sbjct: 64 WLEPLAPPPLFPEVAYSGQARLSSQEIASETNYHRESATDADAANLQSYQQYLVPNPVYG 121
BLAST of Cucsat.G4408 vs. ExPASy TrEMBL
Match:
A0A0A0KJG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1)
HSP 1 Score: 302 bits (773), Expect = 2.70e-102
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 NSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHC 60
NSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHC
Sbjct: 5 NSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHC 64
Query: 61 SSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYL 120
SSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYL
Sbjct: 65 SSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYL 124
Query: 121 VAEPVYGVPIIVETESGRGQKWKR 144
VAEPVYGVPIIVETESGRGQKWKR
Sbjct: 125 VAEPVYGVPIIVETESGRGQKWKR 148
BLAST of Cucsat.G4408 vs. ExPASy TrEMBL
Match:
A0A5A7UIP5 (AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00680 PE=4 SV=1)
HSP 1 Score: 195 bits (495), Expect = 1.76e-60
Identity = 99/125 (79.20%), Postives = 104/125 (83.20%), Query Frame = 0
Query: 20 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPL 79
MLKATKKKLKGLWSKMKKK KPN+TQTN YQYCC CHCSSS+H H+Q PSAPPLP
Sbjct: 1 MLKATKKKLKGLWSKMKKK----KPNKTQTNCYQYCCSCHCSSSSHLHHQ--PSAPPLPP 60
Query: 80 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRG 139
WLN+ PTFLPP TQSQFEHPD AD MV NQWSYQQYLVAEPVYGVPIIV+TES R
Sbjct: 61 WLNEDPTFLPPPTQSQFEHPDRADGMV----TNQWSYQQYLVAEPVYGVPIIVKTESRRD 115
Query: 140 QKWKR 144
QKWKR
Sbjct: 121 QKWKR 115
BLAST of Cucsat.G4408 vs. ExPASy TrEMBL
Match:
A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 3.10e-20
Identity = 61/119 (51.26%), Postives = 73/119 (61.34%), Query Frame = 0
Query: 20 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQQPSAPPLPL 79
MLKA KKKLK WS+ KK+ K PN+ + CC CHCSS+ QPSAPPLP
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPNPNDFPPPCH--CCTCHCSSAI------QPSAPPLPP 60
Query: 80 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 138
WL+D PPS EHP+ A E+ PLVA YQ Y+ +PVYGVPIIV+T+S R
Sbjct: 61 WLDDR--IFPPS-----EHPEEA-EIAAPLVAAPL-YQHYMDPDPVYGVPIIVQTDSRR 101
BLAST of Cucsat.G4408 vs. ExPASy TrEMBL
Match:
A0A2P5XW94 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12995 PE=4 SV=1)
HSP 1 Score: 72.8 bits (177), Expect = 1.46e-11
Identity = 55/145 (37.93%), Postives = 73/145 (50.34%), Query Frame = 0
Query: 20 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQ--------Q 79
M KA KK LK WS+ K+K K P + CICHCS ST H Q Q
Sbjct: 1 MFKAVKK-LK-FWSRKKRKRKSLAPQPSH-------CICHCSHSTSSHYYQCNYPYSPLQ 60
Query: 80 PSAPPLPLWL------NDAPTFLPPSTQS--QFEHPDTADEMVE--PLV--ANQWSYQQY 139
PSAPPLP WL ++ PT + +F HP + +E P++ A SYQQY
Sbjct: 61 PSAPPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESAPMIPAAAVPSYQQY 120
Query: 140 LVAEPVYGVPIIVETESGRGQKWKR 144
+V+ PVYG P++ +T + + W R
Sbjct: 121 MVSNPVYGPPVVQQTAVKKLKFWSR 136
BLAST of Cucsat.G4408 vs. ExPASy TrEMBL
Match:
A0A5D2QDC0 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G118500v1 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 2.44e-11
Identity = 53/135 (39.26%), Postives = 69/135 (51.11%), Query Frame = 0
Query: 20 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHNQQ--------Q 79
M KA KK LK WS+ K+K K P + CICHCS ST H Q Q
Sbjct: 1 MFKAVKK-LK-FWSRKKRKRKSLAPQPSH-------CICHCSHSTSSHYYQCNYPYSPLQ 60
Query: 80 PSAPPLPLWL------NDAPTFLPPSTQS--QFEHPDTADEMVE--PLV--ANQWSYQQY 134
PSAPPLP WL ++ PT + +F HP + +E P++ A SYQQY
Sbjct: 61 PSAPPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESAPMIPAAAVPSYQQY 120
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN49708.1 | 5.58e-102 | 100.00 | hypothetical protein Csa_018344 [Cucumis sativus] | [more] |
| KAA0054146.1 | 3.64e-60 | 79.20 | AUX/IAA protein [Cucumis melo var. makuwa] | [more] |
| XP_022933064.1 | 6.39e-20 | 51.26 | uncharacterized protein LOC111439771 [Cucurbita moschata] | [more] |
| KAG6601672.1 | 1.98e-19 | 51.24 | hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_038684254.1 | 2.60e-11 | 43.20 | uncharacterized protein LOC119984405 [Tripterygium wilfordii] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KJG0 | 2.70e-102 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1 | [more] |
| A0A5A7UIP5 | 1.76e-60 | 79.20 | AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G0068... | [more] |
| A0A6J1EYP6 | 3.10e-20 | 51.26 | uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397... | [more] |
| A0A2P5XW94 | 1.46e-11 | 37.93 | Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12995 PE=4 SV... | [more] |
| A0A5D2QDC0 | 2.44e-11 | 39.26 | Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G118500v1 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
