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Cucsat.G4388 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTTCTTTTCATTTTCAGAAATGTCGGTGAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTATGTGTGAATCTTTGATGCAGATCTCCCTGCCGCATTTATGTTTTACTATTACTCTTCTTTTTCTTCTTCTCTTAATACTCAATCCCCATTTCTGGAATTCCAATTTTAATGTTCTTATTAGGGTTTTTCATTTTCAACATCTCTGTTTCTACAGTACTTTTCTCTTTCTCATTCTTTTGCCCACACAAATTTCACTTACATTTTCTTTTTCAATTCCAATTTATCATCAACAAAACACTCTCTTCCTTCTTTCCTTCTGTTTATGAATTTAGTTGCCTCAATCTCAGCTTACTTTCTTTTCACTTTGATGATGAAAACTCAATGAATTTTAAATTATTAACTGTTAAATCACTACTACTAAACTCAAAAACACATGTGTTCATTTCAACTATTACCTTGTCGACGATCCAACCATCGAATTTTCCAATGTTAATTCCCTATTTCTGGTTTCTTATTCATTAAGATATATCTTCGGAGTGACTCAAAATTGAGTTCGTAGATATGACATTTTCCTCAGTTTTCTGCTGATTGGATATATGACATTGCATACTTTCTCTTTTTATATTTATTCTTTAGGGTTTAATTTGAAGAATGAAATAATATTGTGTGGAAGTTAGAATTCATAACCTTAGACTTTTGCTATTATGTGAAACCACTTAATTGAAAAAAATATTTGAACATATTCTTAATTCATAAGAAGATAAACACTTTTGCATTTCTTTATACAATTTTTTGTTTTTGTTTTTGTTTTTAGATGAGAACTGTCAAAGTCAGCAATATCTCAAAACTTACTTCTGAGAGAGATATCAAAGAATTCTTTTCATTCTCTGGGGAAATCCTTTACGTTGAAATGCAAAGGTTAGTGATAATATTCTATCTTTTTTATTTATTTGGCAAACTCATGCCGGAGAATTTGATTATTTCTTATTATAAAATACTGTTTTGGTCACAATACTTTCTTATGATAGTTGTGATGAGTAAGTGGTACTGATTAAGCATTTTTAGAGGATTACAAACATTACAAAATGTAATGCTGACAAGCTCCTATTGGGAATATGGTTGAGTTTAAATTTTAGTATATTTGTAAATCTTTTTATATTGTGTTTGTAGAAGGATTTTGGAGGTGATTGCTATAATTGCAACTGTTGGTTTTATTTGATTGTTATTATTTATTGGTGTAGAGAAAGTGAGAACACCCAGGTTGCTTATGTTACATATAAGGATTCTCAAGGAGCTGATACTGCAATACTTTTGACAGTATGTTTCTTTAATTACGTACCCAACATTGCTCTCTTTAATTATTTATTTTTATAGTTAATAGTTATGTTAGTTTTTGTTTTCATTCTCTCTTTTTTTATCTTTTAGGGAGCTAAAATTGGTGATCTATCTGTAACAATTACTTTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTCGTCAATCCTGGTAATTTCTCCCCTTTATATGATGAGCATAAAACGTCTCCTCGTTGTTGTTTCCTTGATTTTATGCACAGAAACGAATTAAATCTTTTATGTTGTCTGATGGATCTTAATGATGAAATGGAAGTATCTAAAAATCAAGTACCTGTCTTAAAATTGTTCTGATCTTTTGAAGGATAAAAGGCAAACGGTTACTGGGATTGCTCCGAATCAGGCTGAAGACGTCGTAAGTACAATGCTTGCAAAGGGTTTCATCTTGGGGAAGGATGCTCTAAACAAAGCAAAAGCATTCGACGAACGACTCCAATTGACATCAAATGCTTCTGCAACCGTAGCTTCCATTGACCGCAAGATGGGAATAACTGAGAAAATAACCGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATGAAATGTTCCAAGTTAGGGAGAAGACGAAATCCGCGCTTGCCGTTGCAGAGCAAAAGGCAACAAGCGCGGGAACAGCGCTGATGAGCAATTATTATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCTGTAACTGCAGTTACAAAAGCTGCTGAGGAAGTGACCCAAATGACAAAGGTAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATATCGGGAAAGAACGGGGATTATTAGTAACTTCGCCGAGCTCCATCTGGACGAGCCTTTACCTGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCAGATAGATAGAGAGACAGTAAGTTGTGAATCATAATCTCATATGCATGAAAAACCTTATACTTGTGAATTACATTGTGCTTCTTCTTCTTCTTCTTCTTTTTCTCCACTTTGTTGTATGATATTATACATTTACATTTTAGAGGTGCTCCAATTACAGAGTTTACTTCTTTCTACTTGTGGATGTTGAAATGTTATGACATTCTTTGGGTAGAAAAATCCCTATTTGAATACTTCGATTGTATACTGTTTCATAACTTTTGTAATTGATTAATGTAGTCAAGTTTCTTTCAATTTTAGGTATTTGTGAATTGACATATTCTTCTTAAGTTCGAAACATGAATACATTTTTATTTTGTTCTCATCCATGTTGTTTATTATTATTATTTGGAGTAATAAGGCATTACATACCAACTTAGGATGTTATGACGACTTGTTTAGGATGGCATAATTATTTTTGTTTTAAGCTTCAGGTCATTTGTGAGTTGCAAGTAGAAGAATGCTTGGGAGTGAGATTCTCATGGCTTACATGTTAGCTTCGATTGCTAGAGTATTGAAAATCTCACCGTAACCATTATTTGTTTTGGTAAAGAATATAGAGTCATTAGGTCTGAGTATCAAGCGCATACAATGTGTAATTCGACACTAAATACATGAAATTATGAAAGCATGTAAATGAACATCAAATACTATTTGGTTATGGAGTTGACGACTAGGTCTTGATTCAATCTCTTGTATAAAAATTTGAAAGGAAAAACCATTTGGCCAAAAAGAGTTCTTATGGCAATCCATCAAAATTTTGATTCTGTTGGTGATAAGAATAGAAGAGAATTGATGAATGTCTTTACCTATAGAGCTGGTTTCAGAGGGTGAGCTTCACTAGCTGTGTTCAAGATGATGTCTAAGTGGTCAGGTCAGGAAGGAAGAATGTGTCAAAAAGACCAATGGAACATAAATTGCTTGCTTTCTTTCTTGCTGTCTTAGGAATTCATGCTTCCATCATAGAAACTTTAATAGCCACTCCAAGCTCTGTTAAAATTCCAACTGTATTACTCACTTTTTTTTTTGCTGAAAAAATAAGGATTTGTTTGGATTGATCCTTTTTTAATGCTTGAAAAAGTTGTATCTATTAAAAATGTGTTTTTAAGCCTTGAAAATTTTATCTAATTAGAGATTTATGCAATGATCAATTGATTTTTTTTATAGTTGACTATAAATACCTCGATACATTCAGGGAGATCATCGTTTTCTGTTCTGACGTGTATCTGCAAAACCACAATACAATCGATGTTATGAGTTAGTTCAACAAGATGTCTAAATACATGTTATTTCTATTTATTGTAGATTTCGAAAGAAATTGCAAGGTATTAGTAGTAGTTCCTTTATTCAAACTACAAAAAGTGTATAAGAGAAATAACTTATTAAAAATAGATAGTAATTAGAAAAAAAAAAGGGTTAACTCATTGCATGTTTGCCTCACAAATTCAACTTTAATGGCATATTTTAATGTTTATGTGATCATGGATTCAATGTCCTTTCAATTTTGTTTCGAAAAGAAAAGAAAAAAAAGGTAAAATCTACGTTTTGAAGAACAAGATCGATGATTCTTGTTCTTTTGGAAGGATGGACATATATCCTTCCATTGATTCAATGGGACTAGTCTAAGGTTGAAATTTTGGTCATGGAAGGGTTTTTATAAGACAGGAAACCTTCCTCAAGATAAAGTAAGAAATATGCAAGAGTAATCTAAATAAATACATAAATTACTGTTATAAATTTATAATAAACAAACCTTCATATTTATATTGATTAACAGTAGAAAGTTCACTATTATGAATTTGATATGTAATCTAAACTAACACTATAACCTAGCACTTCCTTTTAGTATATGTATGAGTACGGAATTTATATGTGCACTTTACGTGTTGGAATCTAATTGGACTTAGATTATGCTGTTTTTTTTTTTTTTTTTGTAAAACTTCAAATTTTCTTCTAGACTTACTTGTTTATTTTTGTTCTGTTGGATAAATCATAAGTATATAAATATAGATAAAGGAGTTTTCCCTCTTAAAGGTATTTGTATTTTTGTACCTCAATGACTCGTTCACTTGGTGCATCTTGTTTTTCTCCTAAGGACGCCAAGATGACAACTGCAGCTGC TTTCTTTTCATTTTCAGAAATATGAGAACTGTCAAAGTCAGCAATATCTCAAAACTTACTTCTGAGAGAGATATCAAAGAATTCTTTTCATTCTCTGGGGAAATCCTTTACGTTGAAATGCAAAGAGAAAGTGAGAACACCCAGGTTGCTTATGTTACATATAAGGATTCTCAAGGAGCTGATACTGCAATACTTTTGACAGGAGCTAAAATTGGTGATCTATCTGTAACAATTACTTTGGTTGAGAATTACCATCTTCCACCTGAAGCAATGTCGTCAATCCTGGATAAAAGGCAAACGGTTACTGGGATTGCTCCGAATCAGGCTGAAGACGTCGTAAGTACAATGCTTGCAAAGGGTTTCATCTTGGGGAAGGATGCTCTAAACAAAGCAAAAGCATTCGACGAACGACTCCAATTGACATCAAATGCTTCTGCAACCGTAGCTTCCATTGACCGCAAGATGGGAATAACTGAGAAAATAACCGCAGGCACAGCAGTGGTGAATGAAAAGGTCAGGGAGATGGATGAAATGTTCCAAGTTAGGGAGAAGACGAAATCCGCGCTTGCCGTTGCAGAGCAAAAGGCAACAAGCGCGGGAACAGCGCTGATGAGCAATTATTATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCTGTAACTGCAGTTACAAAAGCTGCTGAGGAAGTGACCCAAATGACAAAGGTAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGTATATATCGGGAAAGAACGGGGATTATTAGTAACTTCGCCGAGCTCCATCTGGACGAGCCTTTACCTGGGGAGCCTGCTATTGTTCCAGTTAATTCAGCAGATAGATAG FLFIFRNMRTVKVSNISKLTSERDIKEFFSFSGEILYVEMQRESENTQVAYVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPEAMSSILDKRQTVTGIAPNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVREKTKSALAVAEQKATSAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKVKVEKAEEEKKESIYRERTGIISNFAELHLDEPLPGEPAIVPVNSADR Homology
BLAST of Cucsat.G4388 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 3.0e-55 Identity = 128/260 (49.23%), Postives = 178/260 (68.46%), Query Frame = 0
BLAST of Cucsat.G4388 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.3e-06 Identity = 56/207 (27.05%), Postives = 94/207 (45.41%), Query Frame = 0
BLAST of Cucsat.G4388 vs. NCBI nr
Match: XP_004142266.1 (binding partner of ACD11 1 [Cucumis sativus] >KGN49610.1 hypothetical protein Csa_018454 [Cucumis sativus]) HSP 1 Score: 518 bits (1335), Expect = 8.18e-185 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of Cucsat.G4388 vs. NCBI nr
Match: XP_008452423.1 (PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo]) HSP 1 Score: 514 bits (1325), Expect = 2.73e-183 Identity = 276/278 (99.28%), Postives = 276/278 (99.28%), Query Frame = 0
BLAST of Cucsat.G4388 vs. NCBI nr
Match: XP_008452424.1 (PREDICTED: binding partner of ACD11 1-like isoform X2 [Cucumis melo] >KAA0056831.1 binding partner of ACD11 1-like isoform X1 [Cucumis melo var. makuwa] >TYJ99956.1 binding partner of ACD11 1-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 511 bits (1316), Expect = 5.98e-182 Identity = 274/276 (99.28%), Postives = 274/276 (99.28%), Query Frame = 0
BLAST of Cucsat.G4388 vs. NCBI nr
Match: XP_038891484.1 (binding partner of ACD11 1 [Benincasa hispida]) HSP 1 Score: 509 bits (1311), Expect = 3.72e-181 Identity = 272/278 (97.84%), Postives = 276/278 (99.28%), Query Frame = 0
BLAST of Cucsat.G4388 vs. NCBI nr
Match: XP_022941588.1 (binding partner of ACD11 1-like isoform X3 [Cucurbita moschata] >KAG7030609.1 Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 493 bits (1270), Expect = 6.59e-175 Identity = 264/278 (94.96%), Postives = 269/278 (96.76%), Query Frame = 0
BLAST of Cucsat.G4388 vs. ExPASy TrEMBL
Match: A0A0A0KIR7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G023900 PE=4 SV=1) HSP 1 Score: 518 bits (1335), Expect = 3.96e-185 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of Cucsat.G4388 vs. ExPASy TrEMBL
Match: A0A1S3BUX7 (binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493460 PE=4 SV=1) HSP 1 Score: 514 bits (1325), Expect = 1.32e-183 Identity = 276/278 (99.28%), Postives = 276/278 (99.28%), Query Frame = 0
BLAST of Cucsat.G4388 vs. ExPASy TrEMBL
Match: A0A5A7UTK1 (Binding partner of ACD11 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00920 PE=4 SV=1) HSP 1 Score: 511 bits (1316), Expect = 2.89e-182 Identity = 274/276 (99.28%), Postives = 274/276 (99.28%), Query Frame = 0
BLAST of Cucsat.G4388 vs. ExPASy TrEMBL
Match: A0A1S3BT66 (binding partner of ACD11 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493460 PE=4 SV=1) HSP 1 Score: 511 bits (1316), Expect = 2.89e-182 Identity = 274/276 (99.28%), Postives = 274/276 (99.28%), Query Frame = 0
BLAST of Cucsat.G4388 vs. ExPASy TrEMBL
Match: A0A6J1FSI4 (binding partner of ACD11 1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111446898 PE=4 SV=1) HSP 1 Score: 493 bits (1270), Expect = 3.19e-175 Identity = 264/278 (94.96%), Postives = 269/278 (96.76%), Query Frame = 0
BLAST of Cucsat.G4388 vs. TAIR 10
Match: AT1G67950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 263.8 bits (673), Expect = 1.5e-70 Identity = 151/271 (55.72%), Postives = 196/271 (72.32%), Query Frame = 0
BLAST of Cucsat.G4388 vs. TAIR 10
Match: AT1G67950.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 263.8 bits (673), Expect = 1.5e-70 Identity = 151/271 (55.72%), Postives = 196/271 (72.32%), Query Frame = 0
BLAST of Cucsat.G4388 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 261.2 bits (666), Expect = 9.8e-70 Identity = 149/266 (56.02%), Postives = 192/266 (72.18%), Query Frame = 0
BLAST of Cucsat.G4388 vs. TAIR 10
Match: AT1G67950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 260.4 bits (664), Expect = 1.7e-69 Identity = 151/272 (55.51%), Postives = 198/272 (72.79%), Query Frame = 0
BLAST of Cucsat.G4388 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 258.8 bits (660), Expect = 4.9e-69 Identity = 145/270 (53.70%), Postives = 196/270 (72.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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