Cucsat.G4249 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G4249
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	40S ribosomal protein S8
Location	ctg1170: 56339 .. 58687 (-)
RNA-Seq Expression	Cucsat.G4249
Synteny	Cucsat.G4249

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCTTACCGTCGCCGCCGCCTGCTGCCGGGTGAGTGTTCTTCCCCATTCTTTTATATTTTCAATCTATGCTCTAAGTTTAGGGTTTGAGCCTTGTTTGTTGTTTCTATCATTTGCTTTCAGGTAACTCCTCTTCGTGTAGGAGCTTCAGTCTCGTCAACATGGGTAAGTCGCACACCGATTTTTGGATTTTCGGATTTTCCCACGCAACTCTGCCTGTGGCTTTATTTTTATTTTTGGATTTTACTAATCTTGGAGGACTTCGTGAATAGGTATCTCTCGAGATTCTATGCACAAGAGGCGTGCAACTGGAGGGAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTAACTACTATCTCGGCTTCTATCTATTTCTGTTCAATTTGATTGACCATTTTTACTCCGTTTCCCTAAGTAGCCGTAAACTGACCCACAAAAGATTCTGTAATTTTCTTTATATATTTGTTTGATTTTTAGTGCTCAATCCAAATTTTGTAGGTTTAGCTGGAACATCGATTTTTTTTTCTTGGATAGTTGTGATGTTATTAGCAAAGATTTGTCATTTGTTTTATATAGTTTAACTAATATGCGTTAGTTATCCCACACCTTTGTTTGGTTGATGTTTTTTTCTTGAATTAATTTCGTGTCACTTGTAATATGTTCACATTTTCATATTTTATGAATGGTGTAGTTGGTTTTTCTCTCTTATCGAAGAATTGATGGAACCCCTTCTTCAATTTTCGAGTTATGGTGCAGTTAGTTCTATTAATTGTAGATGCTGATCTTCTAGTAGAACTGTAACATTGTTATATGTGTATGGGCTCTTGATACTGAAACGTCAACATAACAGTTTGACTTTCTTGTCAATTGAAGTTACAGCTTTTATTTGCTGTGTGTTGTTTTTTAAAGTTCTCGTTATTGTTTTATTTATTTGTAAAGGTATGAGCTTGGAAGGCAACCTGCCAACACTAAGTTATCAAGTGACAAGTCAATCAGGAGGATTCGAGTTCGTGGGGGTAATGTTAAGTGGCGAGCTTTTAGACTCGACACTGGAAACTACTCGTGGGGTAGTGAGGCTGTGTCTAGGAAAACCCGTATTCTAGATGTGGTGTACAATGCATCCAACAATGAACTTGTTCGTACTCAAACTTTGGTGAAGAGTGCCGTTGTTCAGGTTGATGCTGCGCCATTCAAGCAATGGTATCTTCAGCACTATGGAGTGGATATTGGAAGGAAGAAGAAGACTGCAGCATCTGCTAAGAAGGACGAGGTAGAGCAAGTTTTTTGTAGATTTATTGATCAATATGGTTTATTCAAATCTCTAATCTGAGTGCCAATGTTATAATAAATAATAGGTTCAATGTATTGTAACATTACAGCATATGTAATTAGTACATATAAACTAGAGCTCAATATATGAGATAACTTCACTTTTATGGTTGATAGGAAGGTGATGCTGCTGCTGCTGCTGAGGAGGTGAAGAAGAGTAATCATGTTCAGCGCAAACTGGAGAAACGTCAAGAGGGTCGTAAGCTTGACCCACATATTGAAGAGCAATTCAGCAGCGGTCGTTTGATGGCTTGCATTTCATCAAGACCCGGTCAATGTGGTCGTGCTGATGGGTAAGAAGCTCAATTATTTAGTTATTTTGTTGTGTTTATTCGAACTTGTCATATGGCACACTCTTTGTGAATGAAGGAATTTGTAGTAATTTATCGATCTTTTGAAAATTTTTGGCAGATATATCTTGGAGGGCAAAGAACTTGAGTTCTACATGAAGAAGCTCCAGAGAAAGAAGGGAAAAGGTGCTGGTGCTGCTTAAGTTTTGTCGTTAAGATATTTTGTAGCCGTGTTTCCTTCTATGATTCTATCTGTCTTTTTTTGGTCTAATGAAGACGAAGTGTTGCAGCTAAGATGAAACAATTATTTATGAACTCCAATTTTGCTGTTATTAGTTGATTAATCACATTACTTTCCTTAGCCTGTTCCATAATTAGCACATTCTTTATCAGCGTTGAATTTTCTCTAGTACCCTATTTCTGTTGTTGCTCGATTTAATTTTGTCTAAGTTAGAATAGCGTTTCAGAAGACATAGTGTTCCAAAATCGTTTGTTGACCAACTTGGTGAGGTAATATTATGTGAAAAATATTGGGAGAACTATGAATAGATATTTTTAGTTCAATATAGGATGAAGTTTTTTAATTGTAACTGTTTCACCAATTAGTGTTTGGATAAGTTCTATCTATTAATCGCCAGTGATTGTATGAT

Coding sequence (CDS)

ATGCACAAGAGGCGTGCAACTGGAGGGAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTGCCAACACTAAGTTATCAAGTGACAAGTCAATCAGGAGGATTCGAGTTCGTGGGGGTAATGTTAAGTGGCGAGCTTTTAGACTCGACACTGGAAACTACTCGTGGGGTAGTGAGGCTGTGTCTAGGAAAACCCGTATTCTAGATGTGGTGTACAATGCATCCAACAATGAACTTGTTCGTACTCAAACTTTGGTGAAGAGTGCCGTTGTTCAGGTTGATGCTGCGCCATTCAAGCAATGGTATCTTCAGCACTATGGAGTGGATATTGGAAGGAAGAAGAAGACTGCAGCATCTGCTAAGAAGGACGAGGAAGGTGATGCTGCTGCTGCTGCTGAGGAGGTGAAGAAGAGTAATCATGTTCAGCGCAAACTGGAGAAACGTCAAGAGGGTCGTAAGCTTGACCCACATATTGAAGAGCAATTCAGCAGCGGTCGTTTGATGGCTTGCATTTCATCAAGACCCGGTCAATGTGGTCGTGCTGATGGATATATCTTGGAGGGCAAAGAACTTGAGTTCTACATGAAGAAGCTCCAGAGAAAGAAGGGAAAAGGTGCTGGTGCTGCTTAA

Protein sequence

MHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGVDIGRKKKTAASAKKDEEGDAAAAAEEVKKSNHVQRKLEKRQEGRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA

Homology

[Close]

BLAST of Cucsat.G4249 vs. ExPASy Swiss-Prot
Match: O81361 (40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 3.6e-66
Identity = 126/139 (90.65%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAV+RKTR+LDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDEVEQ 140
           +IGRKKKTAA AKKD  E+
Sbjct: 121 EIGRKKKTAA-AKKDTPEE 138

[Close]

BLAST of Cucsat.G4249 vs. ExPASy Swiss-Prot
Match: Q08069 (40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 250.4 bits (638), Expect = 1.4e-65
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKTAASAKKDEVE 139
           DIGRKKKT A AKKD  E
Sbjct: 121 DIGRKKKTPA-AKKDNAE 137

[Close]

BLAST of Cucsat.G4249 vs. ExPASy Swiss-Prot
Match: P49199 (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 246.5 bits (628), Expect = 2.0e-64
Identity = 123/135 (91.11%), Postives = 131/135 (97.04%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRKKKTAASAKKD 136
           DIGRKKK A +AKKD
Sbjct: 121 DIGRKKK-APAAKKD 134

[Close]

BLAST of Cucsat.G4249 vs. ExPASy Swiss-Prot
Match: Q93VG5 (40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.7e-63
Identity = 117/138 (84.78%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA +RKTR+LDVVYNASNNELVRT+TLVKSA+VQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRKKKTAASAKKDEVE 139
           ++GRKKK+A+S KKD  E
Sbjct: 121 ELGRKKKSASSTKKDGEE 138

[Close]

BLAST of Cucsat.G4249 vs. ExPASy Swiss-Prot
Match: Q9FIF3 (40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.7e-60
Identity = 116/130 (89.23%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAV+RKTRILDV YNASNNELVRTQTLVKSA+VQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRKKKTAA 131
           DIGRKKK  A
Sbjct: 121 DIGRKKKGEA 130

[Close]

BLAST of Cucsat.G4249 vs. NCBI nr
Match: XP_004149800.1 (40S ribosomal protein S8 [Cucumis sativus] >KGN47709.1 hypothetical protein Csa_018323 [Cucumis sativus])

HSP 1 Score: 270 bits (691), Expect = 1.01e-89
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAASAKKDE
Sbjct: 121 DIGRKKKTAASAKKDE 136

[Close]

BLAST of Cucsat.G4249 vs. NCBI nr
Match: XP_038884004.1 (40S ribosomal protein S8-2 [Benincasa hispida])

HSP 1 Score: 269 bits (687), Expect = 3.84e-89
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAASAKKDE
Sbjct: 121 DIGRKKKTAASAKKDE 136

[Close]

BLAST of Cucsat.G4249 vs. NCBI nr
Match: XP_008466734.1 (PREDICTED: 40S ribosomal protein S8-2 [Cucumis melo] >KAA0055451.1 40S ribosomal protein S8-2 [Cucumis melo var. makuwa] >TYK08933.1 40S ribosomal protein S8-2 [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (683), Expect = 1.56e-88
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAAS KKDE
Sbjct: 121 DIGRKKKTAASTKKDE 136

[Close]

BLAST of Cucsat.G4249 vs. NCBI nr
Match: XP_038891236.1 (40S ribosomal protein S8 [Benincasa hispida])

HSP 1 Score: 267 bits (682), Expect = 2.14e-88
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKT ASAKKDE
Sbjct: 121 DIGRKKKTLASAKKDE 136

[Close]

BLAST of Cucsat.G4249 vs. NCBI nr
Match: KAG6578955.1 (40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266 bits (681), Expect = 3.25e-88
Identity = 132/136 (97.06%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAASAKK+E
Sbjct: 121 DIGRKKKTAASAKKEE 136

[Close]

BLAST of Cucsat.G4249 vs. ExPASy TrEMBL
Match: A0A0A0KFT0 (40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_6G382970 PE=3 SV=1)

HSP 1 Score: 270 bits (691), Expect = 4.90e-90
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAASAKKDE
Sbjct: 121 DIGRKKKTAASAKKDE 136

[Close]

BLAST of Cucsat.G4249 vs. ExPASy TrEMBL
Match: A0A5D3CAQ0 (40S ribosomal protein S8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00210 PE=3 SV=1)

HSP 1 Score: 267 bits (683), Expect = 7.56e-89
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAAS KKDE
Sbjct: 121 DIGRKKKTAASTKKDE 136

[Close]

BLAST of Cucsat.G4249 vs. ExPASy TrEMBL
Match: A0A1S3CRZ5 (40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103504075 PE=3 SV=1)

HSP 1 Score: 267 bits (683), Expect = 7.56e-89
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAAS KKDE
Sbjct: 121 DIGRKKKTAASTKKDE 136

[Close]

BLAST of Cucsat.G4249 vs. ExPASy TrEMBL
Match: A0A6J1K1I2 (40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111489780 PE=3 SV=1)

HSP 1 Score: 266 bits (681), Expect = 1.58e-88
Identity = 132/136 (97.06%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAASAKK+E
Sbjct: 121 DIGRKKKTAASAKKEE 136

[Close]

BLAST of Cucsat.G4249 vs. ExPASy TrEMBL
Match: A0A6J1FIB1 (40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111445587 PE=3 SV=1)

HSP 1 Score: 266 bits (681), Expect = 1.58e-88
Identity = 132/136 (97.06%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRKKKTAASAKKDE 136
           DIGRKKKTAASAKK+E
Sbjct: 121 DIGRKKKTAASAKKEE 136

[Close]

BLAST of Cucsat.G4249 vs. TAIR 10
Match: AT5G20290.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-64
Identity = 117/138 (84.78%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA +RKTR+LDVVYNASNNELVRT+TLVKSA+VQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRKKKTAASAKKDEVE 139
           ++GRKKK+A+S KKD  E
Sbjct: 121 ELGRKKKSASSTKKDGEE 138

[Close]

BLAST of Cucsat.G4249 vs. TAIR 10
Match: AT5G59240.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-61
Identity = 116/130 (89.23%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTKLSS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAV+RKTRILDV YNASNNELVRTQTLVKSA+VQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRKKKTAA 131
           DIGRKKK  A
Sbjct: 121 DIGRKKKGEA 130

The following BLAST results are available for this feature:

BLAST of Cucsat.G4249 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81361	3.6e-66	90.65	40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1	[more]
Q08069	1.4e-65	90.58	40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2	[more]
P49199	2.0e-64	91.11	40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 S...	[more]
Q93VG5	1.7e-63	84.78	40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1	[more]
Q9FIF3	1.7e-60	89.23	40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1	[more]

BLAST of Cucsat.G4249 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149800.1	1.01e-89	100.00	40S ribosomal protein S8 [Cucumis sativus] >KGN47709.1 hypothetical protein Csa_...	[more]
XP_038884004.1	3.84e-89	98.53	40S ribosomal protein S8-2 [Benincasa hispida]	[more]
XP_008466734.1	1.56e-88	97.79	PREDICTED: 40S ribosomal protein S8-2 [Cucumis melo] >KAA0055451.1 40S ribosomal...	[more]
XP_038891236.1	2.14e-88	97.79	40S ribosomal protein S8 [Benincasa hispida]	[more]
KAG6578955.1	3.25e-88	97.06	40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cucsat.G4249 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFT0	4.90e-90	100.00	40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_6G382970 PE=3 SV=1	[more]
A0A5D3CAQ0	7.56e-89	97.79	40S ribosomal protein S8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CRZ5	7.56e-89	97.79	40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103504075 PE=3 SV=1	[more]
A0A6J1K1I2	1.58e-88	97.06	40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111489780 PE=3 SV=1	[more]
A0A6J1FIB1	1.58e-88	97.06	40S ribosomal protein S8 OS=Cucurbita moschata OX=3662 GN=LOC111445587 PE=3 SV=1	[more]

BLAST of Cucsat.G4249 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20290.1	1.2e-64	84.78	Ribosomal protein S8e family protein	[more]
AT5G59240.1	1.2e-61	89.23	Ribosomal protein S8e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.290.70		coord: 163..195 e-value: 8.6E-7 score: 31.2
None	No IPR available	GENE3D	3.10.290.70		coord: 32..162 e-value: 3.4E-40 score: 138.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	PANTHER	PTHR10394:SF18	40S RIBOSOMAL PROTEIN S8	coord: 1..195
None	No IPR available	CDD	cd11380	Ribosomal_S8e_like	coord: 5..195 e-value: 1.65057E-55 score: 170.778
IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2	PFAM	PF01201	Ribosomal_S8e	coord: 1..195 e-value: 7.6E-53 score: 178.4
IPR001047	Ribosomal protein S8e	TIGRFAM	TIGR00307	TIGR00307	coord: 1..195 e-value: 5.2E-44 score: 147.4
IPR001047	Ribosomal protein S8e	PANTHER	PTHR10394	40S RIBOSOMAL PROTEIN S8	coord: 1..195
IPR018283	Ribosomal protein S8e, conserved site	PROSITE	PS01193	RIBOSOMAL_S8E	coord: 11..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G4249.T6	Cucsat.G4249.T6	mRNA
Cucsat.G4249.T7	Cucsat.G4249.T7	mRNA
Cucsat.G4249.T2	Cucsat.G4249.T2	mRNA
Cucsat.G4249.T3	Cucsat.G4249.T3	mRNA
Cucsat.G4249.T8	Cucsat.G4249.T8	mRNA
Cucsat.G4249.T9	Cucsat.G4249.T9	mRNA
Cucsat.G4249.T11	Cucsat.G4249.T11	mRNA
Cucsat.G4249.T10	Cucsat.G4249.T10	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome