Cucsat.G4243 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G4243
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	ribonuclease P protein subunit p38
Location	ctg109: 123637 .. 133639 (+)
RNA-Seq Expression	Cucsat.G4243
Synteny	Cucsat.G4243

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGACAAATTGGTATGTTTATCATCTTTGTATATAGGTGCATCAAATGTCCTATGTGTATCACTTATATTGCACTTTTGTTTTTAACCATATGTGTGAAATGAGAAAATATGGGACAAACTTACATATTACTAAACTCATCTTTGTTGGTAGATTGTGTACATATTTTGAGGATGAATTCCACGGTTGCATTACTTAACCAAAATTTCAAAATAAAGCCGCGGGCTGGCAGTGCTACTTCGTCATCGTCCTCGCTATTTCTCTCCACGCTTTGAAACTACACTGTCCACCAAGTTTTCACTAATGGGAAAGAACCCTAAATCTTCTTCTCATCCTGTTGCACCCCTTCAATCCAAACCTAACCAAGAGTAAGCAGGCTTTCCTTTCCTTTCCTTTCTTTTCTATTCGATTTTTTTACCTTTATGTTTCTCCCCTAATTTTTATTGGAATACGTTTTTCCGAATTTGATTAAAGCATTTCCTACGAAGGTGAACGTCTCGATGAGTTGCTACTGTCGATTCAGAGGTAAACGGTAGTTAATTTGTCTAACAATGCACTTCAACACACCCCCCACTTACCCATCTCCTGTTGTTATAGAGAGATAAAGACAACAAGAGATTTGAATGCGGAATCCTTGCCGGAAAAATTTTGGCTTAAGGTTTCGTATTTTTAACGATTTTAGTTTCTCTTTTCCATGTCATGTTGATATTGTTTTTTCTTTTTTCTTTTTTTTTTTAGTTATAAGCTACTTATGTTGAGTGATGGGATTTTTTTAGAAACAATTTGCAATTGGGGTTAATGAGGTTACTAGAGTTCTTGAACGGATGACACCATGTGGGGATTCTGCTCGCTTAATGAACCCTAATTATAAGACGTGTACGGTCAAGCTTCAGGTAATCTACTCGGCTATTTATGTTGGGCAATGCTATCTTGGGTTTAGACTCACAAGTGTTACTTTACTGGCTTTGTTTCTGTTTTGTGTCAATCTCACGTGTGCAAATGGATGTGTTTATAATGCGTGTGTTTGTTTTATTATGATATATAATTAAATTTAACTTCACCCATTGACTTAAGCTTCTGGGTCAATTGGTGATTTAAGATGATCAGAACAAGTTGGTTTTGGAAGTCTTGCTGTGTTGTTTTCTCCCCAATTAATATTCATTTTCACTTGTTGGACCTTCTTCTTATTTTGAGCCCACAAGCGAGAGAGTGGAGTGTCATGGTATATAATTAAATTTATCATCACCCATCAACTTAAACTTTTAGGTCAATCGGTGATTTAAGACAGTGAAGAGGCAGTTTAAAACACGAGCTACTTATGGTGCTTCCATGAGCTTTGGTTGTGATAAGTTTATGTCCTAAAACTTCCTAAATCTCTTATTATTTTCTTTGGTGTCAAATCTTATGAACAAAATCCGTAGTGTAGTTACACAGTTACATGCGTTCTTGGGGATTATGCTATTTGATTGGTATAAGCCCATTAATTGTACTTGGCCACACTAGAAAACTTGTTCAAGAATGAGAATGGCCCATTGTTCATGTATCGTACATAGTGTTGATTGTTTGTTCATGTATCTGTTAGACCTCCAATATTATTCCAGCACAGGAGGAGAGGGAATAAAAAGTAACACGTGGGGGTGAGGCACGTGTGAGTGATGGGTTGGTTAGGCATATAAATAAGTTTGTTAAGGGCGGGAGAGGTATTGAGATTTTTTGGTTATTTGAATCTTTCTATTATTCCTTGAGAGAGAGGGAAACAAAGATTGATTTCTTTTCTATTATTTCATTCAATAATATCGAATTCCTATAGAATTGCTACGAGTTCCATCAAATTGGTATCAGAGCATCGATTCAGGGCAAGAAAGAAGAAAATGGTACAGACCAGAATGGAGGACAAAATGGAAACGTTTGATCAAGAGATTCAAGGAATCAAAAAAGAGATCGGGAAGTTACCAGCGATAGAGAAAGCATTGAACGACTTGGCGAAAGGATTGGAGAGACAGAATCAAATGATGATACGATTCATGGAATCGGCCGCCCAGGAGAGATCCACGATGAACGAAAAGATTACAGAATTGTCGATACGGAGTACTCCGATGAAGAACAACGATGACGGCGAAGGATCTTCCATTCGCGAAAACGAACCGAAGAAGGAGGAAGTAAAATCGAATGAGGACGCTAATGGCGATCGCAACAAATTCTCGGTGGAGATGCCGATCTTCAATGGAGACGATCCGGATTCGTGGTTATTCCGCGCTGAAAGGTATTTTCAAATTCATAAATTGACTGACTTCGAAAAGATGACCGTTGCAACAATTAGCTTCGAAGGACCTGCGCTGAACTGGTATCGGTCTCAAGAAGAGCGAGATAAATTCGTCGATTGGGCGAACCTAAAAGAAAGAGTGTTGGTCCGATTTCGATCAACACGGGAAGGTTCTTTGTACGAACGGTTCTTGCGCATTCAACAGACAACTACGGTGGAAGAATACCGAAATCTGTTCGATAAACTAGTCGCACCGCTGTCGGATCTGGCCGATAAAGTGGTAGAAGAAACGTTCATGTTAGGATTGAAGCCATGGATACAGGCTGAGATGGATTTCTGTGAACCTCAAGGATTATCACAGATGATGAGAATCGCGCAGAAGGTAGAAAACAGAGAAGATATTAGAAGAGAAGCGAATCTTCCTGGTTATTCGGGAGCGAAACTGAATAACTCTGGAAGTGGAAACAAAAACAGCACGATGGGGAATTCTGGAGAAAGTAAGGGAAATTGGAACTGGCCAATGAGAACCATCACGTTGAGAGGAACGGCTGACGAAGAGGTACGGAAAACAGGCCTAACGAAAAGATTATCTGATGCCGAATTTCAATCACGAAAGGAGAAGGGACTCTGTTTTCGGTGTAATGAGAAATATTCTCATGATCACAAGTGTAAGATGAAGGAACAGAGAGAGTTACGTATGCTGGTAGTGATGGGGGAGAATGAGGAATATGAAATCATTGAAGAGGAGGAGGTAGAACAGAAAGAGTTGAGTGTGGCTGAAGTTATCCAAGAAGAACATGCTGTTGTGGAATTGTCCATAAACTCAGTAGTGGGATTATCTAATCCAAGAACTATGAAGGTGAAAGGAAAATTATTAGGAAGGCAGATCATTGTGTTAATAGATTGTGAAGCAACACATAACTTCATTAGAGAAGGTTTAGTTGAGGAGCTGCAGATAAGCACGAAGAGTACTACAAATTATGGAGTCATATTAGGTTCTGGAACGGCTATAAAAGGGAAGGGAGTTTGTGAAGCCATTGAAATGATGATTGGAGAATGGAGAGTGATTGATGATTTTTTGCCGCTGGAGCTAGGAGGCGTGGATGCAATATTGGGAATGCAATGGTTATACTCTCTTGGTATAACTGAAGTAGATTGGAAAAACTTAATTCTGACTTTTACTCATCACGGAGAGAAGGTTGTTATAAGGGGAGATCCAAGCCTAACAAAGGCAAGAGTCAGTTTAAAAGCCCTTATGAAATCTTGGGGAGATAAGGATCAAGGGTTCTTGGTCGAATGCAGAGCCTTAGAAAGAAGGGAATTTTTAGAAGTGGATGATACGTTTGATGAAGTGTTGACTGTAGAAGAGTCAGTGGCAGTAGTATTCAAAAGCTTCGAAGATGTTTTTGATTGGCCCGAAACTTTGCCACCACGAAGAGTGATAGAACATCAAATTCATCTAAAGAAGGGAACCGATCCAGTGAATGTACGACCTTATAGGTATGCATATCAACAGAAGACAGAAATGGAGAAGCTGGTGGAAGAAATGCTGGCATCGGGAGTAATACGGCCGAGCACAAGTCCCTATTCTAGTCCAGTATTATTGGTGAGAAAGAAAGATGGAAGTTGGTGTTTTTGTGTGGATTACAGGGCTCCGAATAATGTAACCGTACCAGATAAGTTTCCAATACCAGTCATTGAGGAGTTGTTTGATGAGTTGAATGGGGCTAGTCTTCTCGAAGATTGATCTAAAGTCAGGGTACCATCAAATTAGGATGAGTACTGATGACATTGAAAAGACAACATTCAGAACTCATGAAGGTCATTATGAGTTTATGGTTATGCCGTTTGGCTTGACCAATGCACTGTCCACTTTCCAATCATTGATGAATACTATATTCAGGCCATACTTGAGAAAATTCGTCTTAGTGTTCTTTGATGACATTTTGATCTATAGCAAGGGGTTGAAAGATCATTTGAATCATTTGAGAGCAATATTGGAAGTGTTGAGGAAGAATGAACTTCATGCAAACAGGAAGAAATGTAGCTTTGCTCAGTCTCGTGTAGACTACTTAGGACATATTATTTCAGGAGATGGAATTGAGGTGGATCCTGAAAAAATCAGAGCTATAAAGGAGTGGCCCATTCCTGTGAACGTGAGGGAAGTCAGGGGGTTTCTTGGTCTGACAGGGTATTATCGCAAATTTGTCTAGAATTATGGGACAATTGCAGCCCCATTGACACAGTTATTGAAAATAGGAGGATTTAAGTGGACAGAGGAGACTCAAGAAGCGTTCAATAGGCTGAAACAAGCCATGATGACGCTCCCGGTATTAGCTCTGCCTGATTCCAATGTGTCGTTTGAAATAGAGACTGATGCTTCTGGATTCGGATTGGGGGCTGTATTAATCCAGAACCAACGTCCAATTGCATATTATAGCCATACATTGGCAGTAAGAGATAGAGTAAAACCTGTATATGAGAGAGAGTTAATGGCAGTTGTAATGGCAGTGCAAAGGTGGCATCCATATTTGTTGGGGAAGAGCTTTTTAGTCAAAACTGATCAACGCTCTTTGAAGTTTCTGCTGGAACAGAGAGTTATACAACCTCAATACCAGAAATGGATATCCAAACTTCTGGGATATTCTTTCGAGGTGGTGTATAAACCAGGGTTGGAAAATAAAGCCGCAAATGCATTGTCCAGAGTACCATCATCAGTACAACTGAATCAGCTGACAGCTCCTAAGTTGATCGATATTGAAGTCATCAAGACAGAAGTGGCGCAAGATGAGAAGTTGAAGAATCTTATACAGAAGCTAAGTGAGACAGAAGGGTTGGAGGAAGGAAGGTATTCAATTAAACAGGGTATGCTGATGTACAAAGATCGAATGGAGTTATCCAAAACTTCTAAATTGATTCCAACCATCTTACACACTTATCATGACTCAGTTTTTGGAGGTCACTCAGGATTTTTAAGAACGTATAAAAGGATGGTTGCAGAGTTACATTGGGAAGGAATGAAGCAGGATGTGAAGAAGTATTGCGAAGAGTGCATGATTTGTCAAAGAAATAAGACTTTGGCGTTATCACCAGTTGGACTATTAACACCATTAGAGGTATCTGATCGGGTGTGGGAGGATATTTCAATGGATTTTGTGGAAGGATTACCTAAAGCAGCAGGATATGAAGTAGTTGATCGGTTCAGCAAATATGGACATTTCATACCTATGAAACATCCATATACAGCAAAGACGGTAGCTGAAATATTTGTGAAGGAGGTCGTTCGACTGCATGGGTATCCCAAATCCATTGTTTCGGATAGAGACAAGGTGTTCTTAAGTCATTTTTGGAGGGAATTATTTCGCGTGGTAGGAACGAAGTTGAACCACAGTACAGCGTATCATCCACAAACGGATGGTCAAACACAAGTGGTTAACCGTGGAGTAGAGACATTCTTACGTTCTTTTTGTGGGGAAAAGCCAAGGGAATGGGTTAAATGGATACCATGGGTAGAATATTGGTATAACACCACGTATCAGCGTGCACTTGGAGTCACACCGTTTCAGGTTGTATACGGGCGTTTACCACCTCCTTTGATATACTATGGGGAGAGGGACACTACTAACTCCATGTTAGATGAGCAGCTAAAGGAGCGAGATGTGGTGTTAGGAGCCTTACGTGAACATTTGAGAGTCGCACAGGACAAAATGAAGAAATATGCTGATACCAAGAGAAGAGAGGTTCATTACCAGGTAGGGGATTTGGTATTGTTGAAGATAAGACCAGTGTTTTTAAAGGCTCAAGGCGCACTAAGGCGCATTGGTCCTCTGGAGCCTAGGCGCAAGGCGCAAAAAAAAGCGCGAGCTTTTTTTCATAAGGCGCACTATATATAAAAAGAGAAGAAAATATATATACACACATATAGCAGAGCAACAATGTATAAAATATAGGTACCCAATATAAGTAGCCTAAACAACAAAACACAACAAAAAACTACCCAGTATTCAACAAGTCAATAATCAAAATAAAAGTTCATCCCTAAAGATCAAACTCATCATCACTAAATTGATCCTCGTCTTCATTCAATCCTTCGTTAGACTTATAGCCATCAGTATCTTCTTCTTCCAAATCGAAGTCATCTAAATTTACTTGTTTCCGTTGCGTGGTAGACGAGGATGAACATGAAACAATAGTCTTTGGTCTAGAGGTACTAGCTCTAGAATAGAATGATGGTTCTTTTGCTCCGACAGCTCTAGAAACATCACCCCACGTTAAAGAATCATCATTAAATACCAACTCATCATCCTCCTCAGAATCGTCATCCAATCTTCCAATCAACCATTCATTACTATCATCAATATCTTTCAAGGAGATGGGGTCGACAATATCTCGTAGGTTGTATCGACGTTTTAGTGCTCTGTTGTATTTGATGAACACTAGATCATTCAAACGACTTTGAGCAAGCCTATTTCGTTTCTTGCTATGAAGCTGAAAAATTAGAAAGTTTCATTGTTAGTGAATCAACAAATTTTGATTATCATTCTCAATGTATTTAAGGAGAGGAAAGGTAACCTGTTCAAACACACTCCAATTACGCTCGCATCCAGAAGCACTACAAGTAAGACCTAAAATTCTCACAGCAAACTTTTGCAAGTTTGGAGTTGATTGTCCAAAATTATCCCACCATTCCACTATAGGCACAAACAAAAAATATATATATTAATAGAAGAGCTTGTTGCTAGTATCGTTGAATAATCGTTTAGTTGAAATTTACCTGGAGATATTTTGTCCCTTTGTCTGATTGCTAAAGGTTGTCCGAATAATGCTTCAGCCCTCTTATACTTGCTTAGTTCTGCAAGTATTTTGTCTTGTACTTCCAATGAAGCAACCATTTTCGTTATGCATGAGTAGAGTCCATTAACTATTTCATCATCCTCCTGGATGTTAGGATTCGAATAATAGAATGACGGGTTTAAATAATACCCCGCTGCATGCAGAGGACGATGCAACTGAAGCTCCCATCTTTTATCAATTATGGTGAAAATGTCCTTGTATTTTTCTTCATTATTATTAAAGGATTTAGCAATAGCTTCCTTAGCTCTATCCATGGCCTCATAAATATATCCCATAGGTGGCTTCTTCTCGCCATCAACCAATCTAAGACGAAGAACTGAAGTAGAAGCAGAACGGAAGACGAAGAACTGAAGAAGTAGATGAAGAGTCGTGTGCACCAAAAAACAGAGTAATGGCAGCCGCAGCACTCGTTTTGTGTGAAGAAGAAGGGTGGCCGGAATGGAAGGGTGGAAAAGGAAGCAAACGGAAGACGAAGACGAAGAACTGAAGTAGAAGCAGAACGGAAGACGAAGAACTGAAGAAGTAGATGAAGAGTCGTGTTGAAGAAACTTCACGCGCGAAAGGAGAAGGGTTCTTTCTTCACGTTTACGTAATAGGTTTAAAAAACCTAAATAATAATAGTTTTTTATAATTAAAGCCCAGCCCATAACTTATAAAAAAAAGCCCACGCCTAATTCGACTTGCGCCTAGGCGCGCCTCAAGGGAGGCGCGCGCCTAATATGGGCTTTTTATAATTCGCTGCGCCTCCTCACAAATAAGCCCCAAGTGGGCGCCTTGAGCCTAGGCGCGCCTAGGCGCGCGCCTTAGGGCGCTTTTTAAAACACTGGATAAGACCATATCGACAAGTGACGATTAGAAGGAAAAGAAATGAAAAACTTTCCCCTAAGTTCTTCGGGCCGTACAAGGTGATAGCTAAAATTGGCCCAGTGGCTTACAAGCTGGAATTACCAAAGAACTCGACCATACATCCGGTATTTCATGTATCTCAGCTCAAGAGGGTATTGGGAGAGCACATGGAAGATAGGAATGATGTTCCCTATTTAACGGAAAATCATGAATGGAGAGATATTCCCGAGGAGGTTTATAGTTATTCCAAAAACAAAGCGGGAGAATGGGAGGTGTTAGTTCAGTGGAAGGGACTGCCACAACATGAAGGTACCTGGGAGTTATATAAGGATTTGAAGCAGCGATTTCCAGATTTTCACCTTGAGGACAAGGTGACTTTGGAGAAGGAGAGTAATGTTAGACCTCCAATATTATTTCAGTACAGGAGGAGAGGGAATAAAAAGTAACATGTGGGGGTGAGGCACGTGTGAGTGATGGGTTGGTTAGGCATATAAATAAGTTTGTTAAGGGCGGGAGAGGTATTGAGACTTTTTGGTTATTTGAATCTTTCTGTTATTCCTTGAGAGAGAGGGAAACAAAGATTGATTTCTTTTCTGTTATTTCATTCAATAATATCGAATTCCTATAGAATTGCTGCGAGTTCCATCAGTATCCTTAAGAGATTCCATGCTTCTCTTTAGGCTTTGGTTTCAAAGTTCTTTCGTAATTATTTCCTTGGTAATATTTTGCTAAGATGGAAGTCTTTCTTGTAGTAGGCTTGCTTTTGGTTGGCTTGTTTTTTTTGTATATCCTTGTATTCTTGCCTTCTTTCTCAGTAAAAGTTGTCTTTTTTTCATTGAAAAGTTGTATCCTACAGTGTGTTATTTGTTTATGAAATATCCTGTCTCAATGCTTGGTACTAGTGTCAAAGCAAAGCTCGTCTAAGTAGACAATTAGAATTTACCAAAGTATGATCATAATACATGTATCGTGAGGCACGTAAAAGTACTTGGAGTATTGATCGAGCTAAAACGTATATGCACAACTTGCCTTATTTGTAAAGACTCAACTGGGTCTTAAAGGCTATTTTTCATTATCTCTTGGTTTGATTGCTGTGACTGCTTAATCGACCTACAAGTTTTGAAAGTGGTTTCGTTTTGTTCAGGGAGTAGATATTTTATGGAAAACTTTTACCTCTATTTTGAATATGTATTCTTTATATCATTCTAGTTCAGCGGTGAATGTCATTGTGAATTCCTTAGGACAGGCATCCTTTTTATGCTTGATGTATAACTCAAGTGCAATTAAACCCAACTTATCATGCTTTGTCTACTATCTTTTCTGTATGCAGCGTCTAATTTATTCGAAATTTCACCTTTTATTGTGTAGGCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGTAGGAAATATTAGATTTTTTATGTGATGTGTTCTGTTCTAACTTTTTCCTTTTTCTAACAAAGCTGCATGTTTCCAAACGAACTGCAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACATAAAGACACGTTTCATGGGTACAACAAAGTTGTCTGGTGTTCACTGTACAGTAAAAAAAAAAGTGAAATTGAAGCATGTTCTCGTCTTCTTCCCTGTAGCAGTCTTGATATGTGTTCGAGTTGATTCATTGTAGATAATGGCCACCACTTTAGTTGGAAAGATAGCTCGTAGAATTGGGAAGTATTGATCTTTTGAAAAGGGACATTGTTTGTGGCCGGAGTTGAGTGGATATATTTCTTTATTTTAAAATGTTATATTCATAATTTTGACCTATTAAAGACCGAAACAACATAAAACATATTTATAAAAGTTTAAATGTCTAATTATATTTTTAAAAAGTTAAAGAAATCGTAAAAA

Coding sequence (CDS)

ATGGGAAAGAACCCTAAATCTTCTTCTCATCCTGTTGCACCCCTTCAATCCAAACCTAACCAAGACATTTCCTACGAAGGTGAACGTCTCGATGAGTTGCTACTGTCGATTCAGAGAGAGATAAAGACAACAAGAGATTTGAATGCGGAATCCTTGCCGGAAAAATTTTGGCTTAAGAAACAATTTGCAATTGGGGTTAATGAGGTTACTAGAGTTCTTGAACGGATGACACCATGTGGGGATTCTGCTCGCTTAATGAACCCTAATTATAAGACGTGTACGGTCAAGCTTCAGGCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACATAA

Protein sequence

MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT

Homology

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BLAST of Cucsat.G4243 vs. ExPASy Swiss-Prot
Match: Q32LC1 (Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 6.6e-05
Identity = 36/112 (32.14%), Postives = 53/112 (47.32%), Query Frame = 0


Query: 58  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPT 117
           ++KQ AIG+NEVTR LER                    +L   L   +  P  +T+H+  
Sbjct: 109 VRKQLAIGINEVTRALERN-------------------ELLLALACKSAKPAIVTSHLVQ 168

Query: 118 LAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQR 170
           L++SR VP   V     S RL  ++ LK  +A+G K N +   + +  IL R
Sbjct: 169 LSVSRGVPACQV--PRLSERLAPVLGLKCVLALGFKRNTTAFGEELRAILPR 199

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BLAST of Cucsat.G4243 vs. ExPASy Swiss-Prot
Match: P78345 (Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 34/109 (31.19%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 58  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPT 117
           ++KQ AIGVNEVTR LER                    +L  +L+  +  P  +T+H+  
Sbjct: 109 VRKQLAIGVNEVTRALERR-------------------ELLLVLVCKSVKPAMITSHLIQ 168

Query: 118 LAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEI 167
           L++SR VP   V     S R+  ++ LK  +A+  K N       +DE+
Sbjct: 169 LSLSRSVPACQV--PRLSERIAPVIGLKCVLALAFKKN---TTDFVDEV 193

[Close]

BLAST of Cucsat.G4243 vs. ExPASy Swiss-Prot
Match: Q80UU2 (Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 33/112 (29.46%), Postives = 54/112 (48.21%), Query Frame = 0


Query: 58  LKKQFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPT 117
           ++KQ  IGVNEVTR LER                    +L  +L+  +  P  +T+H+  
Sbjct: 104 VRKQLVIGVNEVTRALERN-------------------ELLLVLVCKSVKPAIITSHLIQ 163

Query: 118 LAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQR 170
           L++SR VP   V   + S R+  ++ LK  +A+G + N       ++ I+ R
Sbjct: 164 LSLSRTVPACQV--PQLSERIAPVIGLKCVLALGSRKNTRDFADEVEAIIPR 194

[Close]

BLAST of Cucsat.G4243 vs. NCBI nr
Match: XP_011654557.1 (ribonuclease P protein subunit p38 [Cucumis sativus] >KAE8648306.1 hypothetical protein Csa_004653 [Cucumis sativus])

HSP 1 Score: 339 bits (870), Expect = 1.76e-117
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM 120
           QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM
Sbjct: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT 171
           SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT 171

[Close]

BLAST of Cucsat.G4243 vs. NCBI nr
Match: XP_008466280.1 (PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo])

HSP 1 Score: 311 bits (797), Expect = 2.38e-106
Identity = 156/170 (91.76%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM 120
           QFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQAILLTANCNPRWLTNHVP LAM
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT 170
           SRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 170

[Close]

BLAST of Cucsat.G4243 vs. NCBI nr
Match: XP_008466288.1 (PREDICTED: ribonuclease P protein subunit p38 isoform X6 [Cucumis melo])

HSP 1 Score: 307 bits (787), Expect = 7.69e-105
Identity = 156/170 (91.76%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYED-SYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM 120
           QFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQAILLTANCNPRWLTNHVP LAM
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT 170
           SRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 169

[Close]

BLAST of Cucsat.G4243 vs. NCBI nr
Match: XP_008466254.1 (PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo])

HSP 1 Score: 300 bits (769), Expect = 7.95e-102
Identity = 156/187 (83.42%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ-----------------AILLT 120
           QFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ                 AILLT
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLT 120

Query: 121 ANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLI 170
           ANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLI
Sbjct: 121 ANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLI 180

[Close]

BLAST of Cucsat.G4243 vs. NCBI nr
Match: XP_008466263.1 (PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo])

HSP 1 Score: 296 bits (759), Expect = 2.57e-100
Identity = 156/187 (83.42%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYED-SYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ-----------------AILLT 120
           QFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ                 AILLT
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLT 120

Query: 121 ANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLI 170
           ANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLI
Sbjct: 121 ANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLI 180

[Close]

BLAST of Cucsat.G4243 vs. ExPASy TrEMBL
Match: A0A1S3CQV2 (ribonuclease P protein subunit p38 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 311 bits (797), Expect = 1.15e-106
Identity = 156/170 (91.76%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM 120
           QFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQAILLTANCNPRWLTNHVP LAM
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT 170
           SRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 170

[Close]

BLAST of Cucsat.G4243 vs. ExPASy TrEMBL
Match: A0A1S3CR39 (ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 3.72e-105
Identity = 156/170 (91.76%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYED-SYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM 120
           QFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQAILLTANCNPRWLTNHVP LAM
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRT 170
           SRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLIDEILQRT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 169

[Close]

BLAST of Cucsat.G4243 vs. ExPASy TrEMBL
Match: A0A1S3CS60 (uncharacterized protein LOC103503720 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 300 bits (769), Expect = 3.85e-102
Identity = 156/187 (83.42%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ-----------------AILLT 120
           QFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ                 AILLT
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLT 120

Query: 121 ANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLI 170
           ANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLI
Sbjct: 121 ANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLI 180

[Close]

BLAST of Cucsat.G4243 vs. ExPASy TrEMBL
Match: A0A1S3CQU5 (uncharacterized protein LOC103503720 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 296 bits (759), Expect = 1.24e-100
Identity = 156/187 (83.42%), Postives = 161/187 (86.10%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYED-SYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ-----------------AILLT 120
           QFAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ                 AILLT
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLT 120

Query: 121 ANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLI 170
           ANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLI
Sbjct: 121 ANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLI 180

[Close]

BLAST of Cucsat.G4243 vs. ExPASy TrEMBL
Match: A0A1S3CS63 (uncharacterized protein LOC103503720 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 291 bits (746), Expect = 1.15e-98
Identity = 154/187 (82.35%), Postives = 159/187 (85.03%), Query Frame = 0


Query: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60
           MGKNPKSS+HPVA LQSKP +D SYEGERLDELLLSIQREIKT R LNAESLPEKFWLK 
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLK- 60

Query: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQ-----------------AILLT 120
            FAIGVNEVTR LERMTPCGDSARLMNPNYK C VKLQ                 AILLT
Sbjct: 61  -FAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLT 120

Query: 121 ANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLI 170
           ANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP+NQLI
Sbjct: 121 ANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLI 180

[Close]

BLAST of Cucsat.G4243 vs. TAIR 10
Match: AT4G01790.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-39
Identity = 85/146 (58.22%), Postives = 103/146 (70.55%), Query Frame = 0


Query: 25  YEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKKQFAIGVNEVTRVLERMTPCGDSAR 84
           YEGERL  LL  IQR I+T++  N  SLPEK WLKKQ AIG+NEVTRVLERM P   S +
Sbjct: 26  YEGERLTHLLDLIQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPNNTSDQ 85

Query: 85  LMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAMSRKVPLILVKD-KEGSLRLGELVS 144
             NP       +LQ ++L A+C PR LT H+P LA SR VP++ V+D K  SLRLGELV 
Sbjct: 86  QQNPK------QLQVVILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKRASLRLGELVK 145

Query: 145 LKTAIAIGIKANGSPINQLIDEILQR 170
           LKTA+AIGIKA G+ +N L+ +IL R
Sbjct: 146 LKTALAIGIKARGNDLNLLLKQILPR 165

The following BLAST results are available for this feature:

BLAST of Cucsat.G4243 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32LC1	6.6e-05	32.14	Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2	[more]
P78345	1.1e-04	31.19	Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2	[more]
Q80UU2	1.1e-04	29.46	Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1	[more]

BLAST of Cucsat.G4243 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654557.1	1.76e-117	100.00	ribonuclease P protein subunit p38 [Cucumis sativus] >KAE8648306.1 hypothetical ...	[more]
XP_008466280.1	2.38e-106	91.76	PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo]	[more]
XP_008466288.1	7.69e-105	91.76	PREDICTED: ribonuclease P protein subunit p38 isoform X6 [Cucumis melo]	[more]
XP_008466254.1	7.95e-102	83.42	PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo]	[more]
XP_008466263.1	2.57e-100	83.42	PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo]	[more]

BLAST of Cucsat.G4243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CQV2	1.15e-106	91.76	ribonuclease P protein subunit p38 isoform X5 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CR39	3.72e-105	91.76	ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CS60	3.85e-102	83.42	uncharacterized protein LOC103503720 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CQU5	1.24e-100	83.42	uncharacterized protein LOC103503720 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CS63	1.15e-98	82.35	uncharacterized protein LOC103503720 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cucsat.G4243 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01790.1	4.2e-39	58.22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 36..171 e-value: 5.7E-21 score: 76.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 43..168
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 96..156 e-value: 2.3E-6 score: 27.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR47903	OS07G0636400 PROTEIN	coord: 6..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G4243.T2	Cucsat.G4243.T2	mRNA
Cucsat.G4243.T1	Cucsat.G4243.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0043232	intracellular non-membrane-bounded organelle