Cucsat.G4192 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G4192
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	ctg1057: 413981 .. 415797 (-)
RNA-Seq Expression	Cucsat.G4192
Synteny	Cucsat.G4192

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTTTCCCGCTTTCATAGCTAAACCAACCAACCAACCAACCAATTCCGGTGGTCTTTTCTGTCAAATTCTCTTTCACTCCCTCAATTTCTTCCCTGTTTTTCCAAACCCTAAACACTCTCTGCTCTTCAAATATTTCATTACTTTAATCTCAAATCCTCCACTATTATTCCTCAATATTCAATCTCATCATATTTATTCTTCATGTCTCACATTGAACCCATTGTCCCCGATTCTTGCTGTATTTCTCCTCGCTTTCATAGCAACAGTTTTCGCCGCTCTCTTCGCTATAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGTTCTTCTTTTGGTAACTATTCCCTCTTTTTTTTTTTTTTCTATTCATTTCCCCTACGTACCTCGATCTGATTGCAAATCCGAATGTTCCGCTTTCGATGTATTTGTTTAATTGATAGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGTACGTTGTTGGGGATTTGGAATACTGAATTCCGTATATTAATGTATTATATATCTGTGTGTGTGTGTGTGTGTTGAATTGGAAACTGAAACTTATCAATTAAAGTTTGTTCAATTATACTTTATTTGGTTTCAATTGTAGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGGTATTCCCATCTTCTTTTGTTAACTGTTTTGGCTTTCGTTTTTGAAATTCGAACTTAGGTCCCGTTTATTCACCCAAAGGTAATTAATCAACAGTAATGTAGAAAGCGGGTCAGTTCATTATGTTTGTTGTTATCTACCGTGTTTTGTAATCAGAATGAACTCTAGATGGTAATCAAAATGAACTGTAGCTGTTAATAAAAATCCAAGAAAGATGCTAAATCTGATTATGCTTGAAAATAATGAATGACACACTACTTCTTATCCTTTTTATCTCTCACATTTACCGTTAGTATTAGAAAAGGTAAAGACAATTTTAATTAATAAACACAATTGAAAACAATTCAATTTAATTGCGATTCAGACAAATTACATTCAATGCATCAAACGGAATCCCAATATGATTAAACTCGTTTTCATTAGGGATTAGTAAAGGTGGCCTTAATGGATTTAATTTCTTGTTATCCACTTGTTTCACGTTAAAGAGAAAAAAAAAAAAAAAAAGATGAAAACCATTCATGAAAAACAAGTATAATCTTCAAAAAGCCAAATTGGTTGATCAAATTAAACGATTATTTCTCTGTTTGATCTGTTGTTTGTGACATTTGAGTATTAATGAGTTATATGCTGGTTCCCTTATGCAGCTGCATTTTGTGGAATTGAGATGTCCCATAGAAGAATAAATAGATATGTGTAGAAAGAAATATAGAAAGATTGAAGAGATGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGCGTGAATTATTATTATAAATTGGTTTCATGATGTATCTTTTTTCTTCTATTTCCACTGTACTTTTCCTTTGTTTGAATTCAAAAATATAATCCATTAGAAGACCAGTCTCTAAGGTACTTAAATTGCTTTAAGAGAAAAACAGAAGACAGAATGGCGATCATACTCTTCTTTGTTTTTTCATCTCAGATGGTGAATCTCATTGCCTTGTCTAACTAACTTGGTGCATGTGTAAGGAACTATTTGGTTTGAAATGTT

Coding sequence (CDS)

ATGTCTCACATTGAACCCATTGTCCCCGATTCTTGCTGTATTTCTCCTCGCTTTCATAGCAACAGTTTTCGCCGCTCTCTTCGCTATAATCGCCTTCCGCCCCAGCTCCTCCGACTCTCCGTCTTGAAATTGGACGGTTCTTCTTTTGAGGTGCAAGTTGAAAGGACGGCGACGGTGGCCGCGGTTAGAGATGCGGTGGAGAGTGTTTTCTGTGAAATGTCGATGAATAAAGAAGATTTCAATATTTCTTGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTTCAAGCTCATGGACGACAAATCTCGTATTCAACATTTTGGAATTCGTGATGGTGATCAGCTGCATTTTGTGGAATTGAGATGTCCCATAGAAGAATAA

Protein sequence

MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFVELRCPIEE

Homology

[Close]

BLAST of Cucsat.G4192 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 37  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCY 96
           +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHFKLMDDKSRIQHFGIRDGDQLHFV 122
            + KL+DD + +Q  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

[Close]

BLAST of Cucsat.G4192 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05
Identity = 26/90 (28.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 94
           Q + + V K+DG    V V ++ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYH 98

Query: 95  LCYKHFKLMDDKSRIQHFGIRDGDQLHFVE 123
           L     KL +D+ +++ +GIR+ D++ F++
Sbjct: 99  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 127

[Close]

BLAST of Cucsat.G4192 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 26/90 (28.89%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 94
           Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYH 89

Query: 95  LCYKHFKLMDDKSRIQHFGIRDGDQLHFVE 123
           L     KL +D+ +++ +GIR+ D++ F++
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118

[Close]

BLAST of Cucsat.G4192 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-05
Identity = 26/90 (28.89%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKED--FNISWPHVWGHFC 94
           Q + + V K+DG    V V + ATV  ++ A++  + ++   +E    +ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYH 89

Query: 95  LCYKHFKLMDDKSRIQHFGIRDGDQLHFVE 123
           L     KL +D+ +++ +GIR+ D++ F++
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFIK 118

[Close]

BLAST of Cucsat.G4192 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 277 bits (708), Expect = 3.77e-94
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 VELRCPIEE 129
           VELRCPIEE
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of Cucsat.G4192 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo] >KAA0050134.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa] >TYK06388.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (696), Expect = 2.83e-92
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VELRCPIEE 129
           VELRCP+EE
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of Cucsat.G4192 vs. NCBI nr
Match: XP_008443963.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 249 bits (635), Expect = 9.45e-83
Identity = 118/129 (91.47%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ+  
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQVFP 123

Query: 121 VELRCPIEE 129
             L C   E
Sbjct: 124 SSLFCNQNE 132

[Close]

BLAST of Cucsat.G4192 vs. NCBI nr
Match: XP_038880358.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida])

HSP 1 Score: 223 bits (569), Expect = 4.47e-73
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEP+VPDSCCISPRF SNSFRRS RY +LPPQL+RLSVLKLDGSSFEVQ+ RTATVA
Sbjct: 1   MSRIEPMVPDSCCISPRFRSNSFRRSFRYKKLPPQLIRLSVLKLDGSSFEVQIARTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQL 118
           AVRDAVESVFC MSMNKED  ISWPHVWGHFCLCYKHFKL+DDKSRI+HFGIRDGDQ+
Sbjct: 61  AVRDAVESVFCGMSMNKEDDKISWPHVWGHFCLCYKHFKLIDDKSRIKHFGIRDGDQI 118

[Close]

BLAST of Cucsat.G4192 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207 bits (527), Expect = 1.33e-66
Identity = 96/121 (79.34%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
            +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

[Close]

BLAST of Cucsat.G4192 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 277 bits (708), Expect = 1.83e-94
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 VELRCPIEE 129
           VELRCPIEE
Sbjct: 121 VELRCPIEE 129

[Close]

BLAST of Cucsat.G4192 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 1.37e-92
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VELRCPIEE 129
           VELRCP+EE
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of Cucsat.G4192 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 1.37e-92
Identity = 126/129 (97.67%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VELRCPIEE 129
           VELRCP+EE
Sbjct: 124 VELRCPVEE 132

[Close]

BLAST of Cucsat.G4192 vs. ExPASy TrEMBL
Match: A0A1S3B9C0 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 249 bits (635), Expect = 4.57e-83
Identity = 118/129 (91.47%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           MS IEPIVPDSCCISPRFH+NSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
           AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ+  
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQVFP 123

Query: 121 VELRCPIEE 129
             L C   E
Sbjct: 124 SSLFCNQNE 132

[Close]

BLAST of Cucsat.G4192 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 3.73e-66
Identity = 95/121 (78.51%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60
           M  IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120
            +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL+D+KSRI+ FGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

[Close]

BLAST of Cucsat.G4192 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-23
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RRS  YN++P + ++L+VLKLDGSSF +QV +TATV  ++ AVE+ F  + ++     IS
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPG-KIS 84

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
           WPHVWG FCL Y+  +L+++   +  FGI+DGDQL F+
Sbjct: 85  WPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFI 121

[Close]

BLAST of Cucsat.G4192 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 9.3e-23
Identity = 57/118 (48.31%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 14  ISPRFHSN---------SFRRSLRYNRLPPQ-LLRLSVLKLDGSSFEVQVERTATVAAVR 73
           I PRF S+         S RRS  Y +LPPQ  ++LSV+KL+GS F+V+V +  +VA ++
Sbjct: 21  IDPRFLSSFALNDGGSISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 74  DAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
            AVE VF    +      ISW HVWGHFCLCY+  +L++DK+ I++ G+ DGDQLHFV
Sbjct: 81  RAVEQVFTISPLEGHGM-ISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFV 136

[Close]

BLAST of Cucsat.G4192 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 3.9e-21
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 24  RRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNIS 83
           RR+  Y++LP + +RLSVLKLDGSSF+V V  +ATV  ++ A+E+ F  +   K    IS
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKIS 65

Query: 84  WPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 121
           W HVWGHFCLC+   KL+ D   I ++G++DGD++ F
Sbjct: 66  WSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRF 101

[Close]

BLAST of Cucsat.G4192 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-18
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 32  LPPQLLRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSMNKEDFNISWPHVWGHF 91
           +P + ++L+VLKLDGSSF   V +TATV  ++ AVE+ F  + ++     ISWPHVWG F
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPG-KISWPHVWGQF 60

Query: 92  CLCYKHFKLMDDKSRIQHFGIRDGDQLHFV 122
           CL Y+  +L+++   +  FGI+DGDQL F+
Sbjct: 61  CLSYEDKRLINESEYLTEFGIKDGDQLRFI 86

[Close]

BLAST of Cucsat.G4192 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 37  LRLSVLKLDGSSFEVQVERTATVAAVRDAVESVFCEMSM-NKEDFNISWPHVWGHFCLCY 96
           +RLSV+KLDGSS +V V  +AT+  ++  ++    EM   N    +ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KHFKLMDDKSRIQHFGIRDGDQLHFV 122
            + KL+DD + +Q  GIR+  Q+ F+
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFM 137

The following BLAST results are available for this feature:

BLAST of Cucsat.G4192 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	1.6e-11	41.86	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	1.0e-05	28.89	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	1.3e-05	28.89	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	1.7e-05	28.89	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]

BLAST of Cucsat.G4192 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655436.1	3.77e-94	100.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]
XP_008443964.1	2.83e-92	97.67	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_008443963.1	9.45e-83	91.47	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_038880358.1	4.47e-73	87.29	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]	[more]
XP_023531557.1	1.33e-66	79.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]

BLAST of Cucsat.G4192 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT94	1.83e-94	100.00	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A5A7U4H4	1.37e-92	97.67	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	1.37e-92	97.67	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3B9C0	4.57e-83	91.47	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumi...	[more]
A0A6J1EHC7	3.73e-66	78.51	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]

BLAST of Cucsat.G4192 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	2.4e-23	48.98	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	9.3e-23	48.31	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	3.9e-21	48.45	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	6.9e-18	46.67	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	1.1e-12	41.86	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 37..122 e-value: 1.1E-24 score: 86.2
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 37..123 e-value: 4.05463E-38 score: 122.242
None	No IPR available	GENE3D	3.10.20.90		coord: 33..126 e-value: 6.4E-31 score: 108.2
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 5..121
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 5..121
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 33..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G4192.T1	Cucsat.G4192.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex