Cucsat.G3762 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G3762
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Retrovirus-related Pol polyprotein from transposon RE2
Location	ctg105: 559612 .. 561188 (+)
RNA-Seq Expression	Cucsat.G3762
Synteny	Cucsat.G3762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAATGGATCCAATTATTACGATTGGCGTCGGACAATTTTATTTTATTTGAGAAGTACTGATATGGATGATCATATGACTGAAGATCCCCCAAAAGATGCAAAGCAGAAGAAGGATTGGCTTCGTGATGATGCCCGTTTATATCTTCAGATCAAGAATTCAATTGAGAGTGAGATAATTGGATTGGTTGATCACTGTGAGTCTGTTAAAGAACTTTTGGAATTTTTGGATTTTCTATACTCAGGTAAAGAGCAAGTGCATAGAATGTTTGAAGTTTGTATGCAATTTTTTCGTGCGGAACAGAAAGCTGAGTCTGTCACCAGCTACTTTATGCGGCTTAAGAAGATCATTGCCGAGCTTGGCTTGTTGTTACCTTTTAGTCCTGATGTTAAAGTTCAACAAGTTCAACGAGAGAAGATGGCTGTTATGATTTTTCTGAATGGACTCTTACCTGAATTTGGAATGGCAAAGACACAGATTCTCTCTGACTCCAAGATTCCATCATTAGATGATGCCTTCACTCGAGTCCTTCGCATTGAAAGCTCTCCGACTAGTGTGTCTATTCCTCAACCCAGTAGTGCTCTCTTTAGCAAGAACAATAACCCTCGGGCACCTCAGAGGAATAGTACTGATCATCGAAAACCAGAGTCTGTAGAGATTGTTTGTAACTACTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCGGAAATTGCTATATAAGAATAGTCAACGATCTCAACATGCTCAGATAGCCTCCACATGCGATATACCAGAGGCGTCAGTTACTATTTCTGCAGATGAGTTTGCTAAGTTTCAGAATTACCAAGAGTCATTACAAGCGTCATCTTCCTCTACTCCGATTGCATCCACTGTTGCCCCAGGTAATATAAAGTGTCTTCTTACATCATCTACCAAATGGGTCATAGACTCTGGTGCCACAGCTCATATGACAGGTAATTCTCACCTATTTTCTAGACCGTTGTCCCCTGCCCCTTTCCCATCTGTTACATTGGCCGATGGCTCCACATCTTCTGTTCTTGGCTCTGGCACTATTCACCTTACCCCATCCTTTTCTCTCTCTTCTGTGTTACATTTGCCTAACTTATCCTTTAATTTAATTTCTACTAGTCAACTTACTCATGACCTGAATTGTGTTGTCATGTTCTTTTCTGGTTATTGCTTGTTTCAGGATCGTGTGACGAAGAAGATTATTGGTAGAGGATATGAGTCAGGAGGCCTTTATCTCTTTGATCATCAAGTATCGCAAGCTGTGGCGTGTCCTGTCGTTCCCTCTCCTTTTGAAGTCCATTGTCGTTTAGGTCATCCATCTTTGTTTGTGTTGAAGAAACTTTATCCAGAATTTAGGTCTTTGTCCTCTTTAAATTGTGATTCGTGTCAATTTGCGAAATTTCATCGTCTTAGTTCGAGTCCTCGAGTCGATAAACGAGCAATTGCTCCATTTGAGTTAGTTCATTCTGATATTTGGGGTCCGTGTCCAGTTGTATCTCAAACAGGCTTTCGTTATTTTGTTACTTTTGTTGACGATCATTCTCGTCTAACTTGGTTATATTTAATGAAAAATCGTTCTGAGTTATTATCTCATTTTTGTGCCTTTCATACTGAAATAAAAAACCAATTTAATGTCTCTATCAAAACTTTGCGTACTGATAATGCGGGTGAATATTTTTCTCATTCTCTTGGTTCTTACTTGTGTGAAAATGGCATTATTCATCAATCTTCCTGTGCTGACACTCCATCTCAAAATGGTGTTGCAGAGCGAAAAAATAGGCATTTACTTGAAACTGCCCGTGCT

Coding sequence (CDS)

ATGAGTTTGCTAAGTTTCAGAATTACCAAGAGTCATTACAAGCGTCATCTTCCTCTACTCCGATTGCATCCACTGTTGCCCCAGGATCGTGTGACGAAGAAGATTATTGGTAGAGGATATGAGTCAGGAGGCCTTTATCTCTTTGATCATCAAGTATCGCAAGCTGTGGCGTGTCCTGTCGTTCCCTCTCCTTTTGAAGTCCATTGTCGTTTAGGTCATCCATCTTTGTTTGTGTTGAAGAAACTTTATCCAGAATTTAGGTCTTTGTCCTCTTTAAATTGTGATTCGTGTCAATTTGCGAAATTTCATCGTCTTAGTTCGAGTCCTCGAGTCGATAAACGAGCAATTGCTCCATTTGAGTTAGTTCATTCTGATATTTGGGGTCCGTGTCCAGTTGTATCTCAAACAGGCTTTCGTTATTTTGTTACTTTTGTTGACGATCATTCTCGTCTAACTTGGTTATATTTAATGAAAAATCGTTCTGAGTTATTATCTCATTTTTGTGCCTTTCATACTGAAATAAAAAACCAATTTAATGTCTCTATCAAAACTTTGCGTACTGATAATGCGGGTGAATATTTTTCTCATTCTCTTGGTTCTTACTTGTGTGAAAATGGCATTATTCATCAATCTTCCTGTGCTGACACTCCATCTCAAAATGGTGTTGCAGAGCGAAAAAATAGGCATTTACTTGAAACTGCCCGTGCT

Protein sequence

MSLLSFRITKSHYKRHLPLLRLHPLLPQDRVTKKIIGRGYESGGLYLFDHQVSQAVACPVVPSPFEVHCRLGHPSLFVLKKLYPEFRSLSSLNCDSCQFAKFHRLSSSPRVDKRAIAPFELVHSDIWGPCPVVSQTGFRYFVTFVDDHSRLTWLYLMKNRSELLSHFCAFHTEIKNQFNVSIKTLRTDNAGEYFSHSLGSYLCENGIIHQSSCADTPSQNGVAERKNRHLLETARA

Homology

[Close]

BLAST of Cucsat.G3762 vs. NCBI nr
Match: XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])

HSP 1 Score: 593 bits (1529), Expect = 3.63e-199
Identity = 304/305 (99.67%), Postives = 305/305 (100.00%), Query Frame = 0


Query: 1   YLRSTDMDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEF 60
           YLRSTDMDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEF
Sbjct: 39  YLRSTDMDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEF 98

Query: 61  LDFLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQV 120
           LDFLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQV
Sbjct: 99  LDFLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQV 158

Query: 121 QREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSAL 180
           QREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSAL
Sbjct: 159 QREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSAL 218

Query: 181 FSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTC 240
           FSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTC
Sbjct: 219 FSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTC 278

Query: 241 DIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATA 300
           DIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATA
Sbjct: 279 DIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATA 338

Query: 301 HMTGS 305
           HMTG+
Sbjct: 339 HMTGN 343

[Close]

BLAST of Cucsat.G3762 vs. NCBI nr
Match: KAA0033068.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK03482.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 439 bits (1130), Expect = 2.64e-150
Identity = 237/306 (77.45%), Postives = 251/306 (82.03%), Query Frame = 0


Query: 7   MDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEFLDFLYS 66
           MDDHMTED PKDAK+KKDWLRDDARLYLQIKNSIESEIIGLV          ++++    
Sbjct: 1   MDDHMTEDAPKDAKKKKDWLRDDARLYLQIKNSIESEIIGLVKS--------KYIE---- 60

Query: 67  GKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMA 126
                      C++FFRAEQKAESVT+YFMRLKKI A L LLLPFSPDVKVQQ QREKM 
Sbjct: 61  -----------CLRFFRAEQKAESVTNYFMRLKKITAALALLLPFSPDVKVQQAQREKMV 120

Query: 127 VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNN 186
           V IFLNGLLPEFGM K QILSDSKIPSLDDAFTRVLRIESSP  VSIPQ SSAL SKNNN
Sbjct: 121 VTIFLNGLLPEFGMTKAQILSDSKIPSLDDAFTRVLRIESSPNGVSIPQSSSALISKNNN 180

Query: 187 PRAP-------QRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIAST 246
           PRAP       QR S DHRKP S +IVCNYC KPGH+KRDCRKLLYKNSQ+SQHAQIAST
Sbjct: 181 PRAPRAMDGNVQRKSYDHRKPYSTKIVCNYCHKPGHIKRDCRKLLYKNSQQSQHAQIAST 240

Query: 247 CDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGAT 305
           CDIPEASVTISADE+ KFQNYQ+ LQASSSSTPIASTVAPGN KCLLTSSTKWVIDS AT
Sbjct: 241 CDIPEASVTISADEYTKFQNYQDPLQASSSSTPIASTVAPGNTKCLLTSSTKWVIDSSAT 283

[Close]

BLAST of Cucsat.G3762 vs. NCBI nr
Match: XP_031738594.1 (uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus])

HSP 1 Score: 367 bits (943), Expect = 6.13e-126
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 125 MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 184
           M VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN
Sbjct: 1   MVVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 60

Query: 185 NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 244
           NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE
Sbjct: 61  NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 120

Query: 245 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTG 304
           ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTG
Sbjct: 121 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTG 180

Query: 305 SCDEEDYW 312
           SCDEEDYW
Sbjct: 181 SCDEEDYW 188

[Close]

BLAST of Cucsat.G3762 vs. NCBI nr
Match: KAA0033139.1 (uncharacterized protein E6C27_scaffold269G002790 [Cucumis melo var. makuwa])

HSP 1 Score: 343 bits (880), Expect = 7.72e-115
Identity = 197/306 (64.38%), Postives = 221/306 (72.22%), Query Frame = 0


Query: 1   YLRSTDMDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEF 60
           YL+STDMDDHMTE+ P++AK+KK+WL DDARLYLQIKNSIESEIIGL+DH          
Sbjct: 39  YLKSTDMDDHMTEEAPENAKKKKNWLHDDARLYLQIKNSIESEIIGLLDH---------- 98

Query: 61  LDFLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQV 120
                                      +ESVT+YFMRLKKI AEL LLLPF+PDVKVQQ 
Sbjct: 99  ---------------------------SESVTNYFMRLKKITAELALLLPFNPDVKVQQA 158

Query: 121 QREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSAL 180
           QREKMAVMI LNGLLPEFGM KTQILS+SKIPSLDDAFTRVLRIESSP  VSIPQ +S L
Sbjct: 159 QREKMAVMIILNGLLPEFGMTKTQILSNSKIPSLDDAFTRVLRIESSPNGVSIPQSNSTL 218

Query: 181 FSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTC 240
            SKNNNPRAP+                      G+++   RK++  ++Q  Q   IASTC
Sbjct: 219 ISKNNNPRAPRAMD-------------------GNVQ---RKII--DNQILQRLFIASTC 278

Query: 241 DIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATA 300
           DIPEAS+TISADE+AKFQNYQ+SLQA SSSTP+ASTVAPGN KCLLTSSTKWVIDSGAT 
Sbjct: 279 DIPEASITISADEYAKFQNYQDSLQALSSSTPVASTVAPGNTKCLLTSSTKWVIDSGATT 283

Query: 301 HMTGSC 306
           HMTG C
Sbjct: 339 HMTGYC 283

[Close]

BLAST of Cucsat.G3762 vs. NCBI nr
Match: KAA0038222.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 350 bits (898), Expect = 4.84e-112
Identity = 200/293 (68.26%), Postives = 211/293 (72.01%), Query Frame = 0


Query: 7   MDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEFLDFLYS 66
           MDDHMTED P+DAK KKDWLRDDARLYLQIKNSI                          
Sbjct: 1   MDDHMTEDAPEDAK-KKDWLRDDARLYLQIKNSI-------------------------G 60

Query: 67  GKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMA 126
            KEQVHRMFEVCMQF RAEQKAESVT+YFMRLKKI AEL LLLPFSPDVK Q        
Sbjct: 61  TKEQVHRMFEVCMQFLRAEQKAESVTNYFMRLKKITAELALLLPFSPDVKAQ-------- 120

Query: 127 VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNN 186
                             ILSDSKIPSLD+AFTRVL  ESSP  VSIPQ S++L SKNNN
Sbjct: 121 ------------------ILSDSKIPSLDNAFTRVLCFESSPNGVSIPQSSTSLISKNNN 180

Query: 187 PRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIAST 246
           PRAP+         S DHRKP+S EIVCNYCRKP H KRDCRKLLYKNSQ+SQHAQIAST
Sbjct: 181 PRAPRAMDGNVHTKSYDHRKPDSTEIVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIAST 240

Query: 247 CDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKW 292
           CDIPEAS+TISA+E AK QNYQ+SLQASSSSTPIASTV PGN KCLLTSSTKW
Sbjct: 241 CDIPEASITISANECAKLQNYQDSLQASSSSTPIASTVVPGNTKCLLTSSTKW 241

[Close]

BLAST of Cucsat.G3762 vs. ExPASy TrEMBL
Match: A0A5A7SR90 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00970 PE=4 SV=1)

HSP 1 Score: 439 bits (1130), Expect = 1.28e-150
Identity = 237/306 (77.45%), Postives = 251/306 (82.03%), Query Frame = 0


Query: 7   MDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEFLDFLYS 66
           MDDHMTED PKDAK+KKDWLRDDARLYLQIKNSIESEIIGLV          ++++    
Sbjct: 1   MDDHMTEDAPKDAKKKKDWLRDDARLYLQIKNSIESEIIGLVKS--------KYIE---- 60

Query: 67  GKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMA 126
                      C++FFRAEQKAESVT+YFMRLKKI A L LLLPFSPDVKVQQ QREKM 
Sbjct: 61  -----------CLRFFRAEQKAESVTNYFMRLKKITAALALLLPFSPDVKVQQAQREKMV 120

Query: 127 VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNN 186
           V IFLNGLLPEFGM K QILSDSKIPSLDDAFTRVLRIESSP  VSIPQ SSAL SKNNN
Sbjct: 121 VTIFLNGLLPEFGMTKAQILSDSKIPSLDDAFTRVLRIESSPNGVSIPQSSSALISKNNN 180

Query: 187 PRAP-------QRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIAST 246
           PRAP       QR S DHRKP S +IVCNYC KPGH+KRDCRKLLYKNSQ+SQHAQIAST
Sbjct: 181 PRAPRAMDGNVQRKSYDHRKPYSTKIVCNYCHKPGHIKRDCRKLLYKNSQQSQHAQIAST 240

Query: 247 CDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGAT 305
           CDIPEASVTISADE+ KFQNYQ+ LQASSSSTPIASTVAPGN KCLLTSSTKWVIDS AT
Sbjct: 241 CDIPEASVTISADEYTKFQNYQDPLQASSSSTPIASTVAPGNTKCLLTSSTKWVIDSSAT 283

[Close]

BLAST of Cucsat.G3762 vs. ExPASy TrEMBL
Match: A0A5A7SVC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G002790 PE=4 SV=1)

HSP 1 Score: 343 bits (880), Expect = 3.74e-115
Identity = 197/306 (64.38%), Postives = 221/306 (72.22%), Query Frame = 0


Query: 1   YLRSTDMDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEF 60
           YL+STDMDDHMTE+ P++AK+KK+WL DDARLYLQIKNSIESEIIGL+DH          
Sbjct: 39  YLKSTDMDDHMTEEAPENAKKKKNWLHDDARLYLQIKNSIESEIIGLLDH---------- 98

Query: 61  LDFLYSGKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQV 120
                                      +ESVT+YFMRLKKI AEL LLLPF+PDVKVQQ 
Sbjct: 99  ---------------------------SESVTNYFMRLKKITAELALLLPFNPDVKVQQA 158

Query: 121 QREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSAL 180
           QREKMAVMI LNGLLPEFGM KTQILS+SKIPSLDDAFTRVLRIESSP  VSIPQ +S L
Sbjct: 159 QREKMAVMIILNGLLPEFGMTKTQILSNSKIPSLDDAFTRVLRIESSPNGVSIPQSNSTL 218

Query: 181 FSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTC 240
            SKNNNPRAP+                      G+++   RK++  ++Q  Q   IASTC
Sbjct: 219 ISKNNNPRAPRAMD-------------------GNVQ---RKII--DNQILQRLFIASTC 278

Query: 241 DIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATA 300
           DIPEAS+TISADE+AKFQNYQ+SLQA SSSTP+ASTVAPGN KCLLTSSTKWVIDSGAT 
Sbjct: 279 DIPEASITISADEYAKFQNYQDSLQALSSSTPVASTVAPGNTKCLLTSSTKWVIDSGATT 283

Query: 301 HMTGSC 306
           HMTG C
Sbjct: 339 HMTGYC 283

[Close]

BLAST of Cucsat.G3762 vs. ExPASy TrEMBL
Match: A0A5A7T406 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 PE=4 SV=1)

HSP 1 Score: 350 bits (898), Expect = 2.34e-112
Identity = 200/293 (68.26%), Postives = 211/293 (72.01%), Query Frame = 0


Query: 7   MDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEFLDFLYS 66
           MDDHMTED P+DAK KKDWLRDDARLYLQIKNSI                          
Sbjct: 1   MDDHMTEDAPEDAK-KKDWLRDDARLYLQIKNSI-------------------------G 60

Query: 67  GKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMA 126
            KEQVHRMFEVCMQF RAEQKAESVT+YFMRLKKI AEL LLLPFSPDVK Q        
Sbjct: 61  TKEQVHRMFEVCMQFLRAEQKAESVTNYFMRLKKITAELALLLPFSPDVKAQ-------- 120

Query: 127 VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNN 186
                             ILSDSKIPSLD+AFTRVL  ESSP  VSIPQ S++L SKNNN
Sbjct: 121 ------------------ILSDSKIPSLDNAFTRVLCFESSPNGVSIPQSSTSLISKNNN 180

Query: 187 PRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIAST 246
           PRAP+         S DHRKP+S EIVCNYCRKP H KRDCRKLLYKNSQ+SQHAQIAST
Sbjct: 181 PRAPRAMDGNVHTKSYDHRKPDSTEIVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIAST 240

Query: 247 CDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKW 292
           CDIPEAS+TISA+E AK QNYQ+SLQASSSSTPIASTV PGN KCLLTSSTKW
Sbjct: 241 CDIPEASITISANECAKLQNYQDSLQASSSSTPIASTVVPGNTKCLLTSSTKW 241

[Close]

BLAST of Cucsat.G3762 vs. ExPASy TrEMBL
Match: A0A5D3E5M8 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00270 PE=4 SV=1)

HSP 1 Score: 353 bits (906), Expect = 2.70e-112
Identity = 201/293 (68.60%), Postives = 212/293 (72.35%), Query Frame = 0


Query: 7   MDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEFLDFLYS 66
           MDDHMTED P+DAK KKDWLRDDARLYLQIKNSI                          
Sbjct: 1   MDDHMTEDAPEDAK-KKDWLRDDARLYLQIKNSI-------------------------G 60

Query: 67  GKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMA 126
            KEQVHRMFEVCMQF RAEQKAESVT+YFMRLKKI AEL LLLPFSPDVK Q        
Sbjct: 61  TKEQVHRMFEVCMQFLRAEQKAESVTNYFMRLKKITAELALLLPFSPDVKAQ-------- 120

Query: 127 VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNN 186
                             ILSDSKIPSLD+AFTRVLR ESSP  VSIPQ S++L SKNNN
Sbjct: 121 ------------------ILSDSKIPSLDNAFTRVLRFESSPNGVSIPQSSTSLISKNNN 180

Query: 187 PRAPQR-------NSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIAST 246
           PRAP+         S DHRKP+S EIVCNYCRKP H KRDCRKLLYKNSQ+SQHAQIAST
Sbjct: 181 PRAPRAMDGNVHTKSYDHRKPDSTEIVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIAST 240

Query: 247 CDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKW 292
           CDIPEAS+TISA+E AK QNYQ+SLQASSSSTPIASTV PGN KCLLTSSTKW
Sbjct: 241 CDIPEASITISANECAKLQNYQDSLQASSSSTPIASTVVPGNTKCLLTSSTKW 241

[Close]

BLAST of Cucsat.G3762 vs. ExPASy TrEMBL
Match: A0A5D3D1J3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00260 PE=4 SV=1)

HSP 1 Score: 332 bits (851), Expect = 2.07e-111
Identity = 192/300 (64.00%), Postives = 215/300 (71.67%), Query Frame = 0


Query: 7   MDDHMTEDPPKDAKQKKDWLRDDARLYLQIKNSIESEIIGLVDHCESVKELLEFLDFLYS 66
           MDDHMTE+ P++AK+KK+WL DDARLYLQIKNSIESEIIGL+DH                
Sbjct: 1   MDDHMTEEAPENAKKKKNWLHDDARLYLQIKNSIESEIIGLLDH---------------- 60

Query: 67  GKEQVHRMFEVCMQFFRAEQKAESVTSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMA 126
                                +ESVT+YFMRLKKI AEL LLLPF+PDVKVQQ QREKMA
Sbjct: 61  ---------------------SESVTNYFMRLKKITAELALLLPFNPDVKVQQAQREKMA 120

Query: 127 VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNN 186
           VMI LNGLLPEFGM KTQILS+SKIPSLDDAFTRVLRIESSP  VSIPQ +S L SKNNN
Sbjct: 121 VMIILNGLLPEFGMTKTQILSNSKIPSLDDAFTRVLRIESSPNGVSIPQSNSTLISKNNN 180

Query: 187 PRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEAS 246
           PRAP+                      G+++   RK++  ++Q  Q   IASTCDIPEAS
Sbjct: 181 PRAPRAMD-------------------GNVQ---RKII--DNQILQRLFIASTCDIPEAS 239

Query: 247 VTISADEFAKFQNYQESLQASSSSTPIASTVAPGNIKCLLTSSTKWVIDSGATAHMTGSC 306
           +TISADE+AKFQNYQ+SLQA SSSTP+ASTVAPGN KCLLTSSTKWVIDSGAT HMTG C
Sbjct: 241 ITISADEYAKFQNYQDSLQALSSSTPVASTVAPGNTKCLLTSSTKWVIDSGATTHMTGYC 239

The following BLAST results are available for this feature:

BLAST of Cucsat.G3762 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G3762 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744753.1	3.63e-199	99.67	uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]	[more]
KAA0033068.1	2.64e-150	77.45	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK03482.1 gag-pol polyprotein [...	[more]
XP_031738594.1	6.13e-126	99.47	uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus]	[more]
KAA0033139.1	7.72e-115	64.38	uncharacterized protein E6C27_scaffold269G002790 [Cucumis melo var. makuwa]	[more]
KAA0038222.1	4.84e-112	68.26	Copia protein [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G3762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR90	1.28e-150	77.45	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G...	[more]
A0A5A7SVC9	3.74e-115	64.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T406	2.34e-112	68.26	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 ...	[more]
A0A5D3E5M8	2.70e-112	68.60	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G0027...	[more]
A0A5D3D1J3	2.07e-111	64.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cucsat.G3762 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 117..213 e-value: 5.7E-14 score: 52.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 114..236 score: 16.752663
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 44..101 e-value: 1.1E-7 score: 31.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 111..236 e-value: 6.1E-29 score: 102.7
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 68..236
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 68..236
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 114..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G3762.T1	Cucsat.G3762.T1	mRNA
Cucsat.G3762.T2	Cucsat.G3762.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding