Cucsat.G3078 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAAATAAAATTGATATTTAGAAGATGAAAATGAAAAGAAAAAAAGAAAAAGAAATCGAAACAGTTCAAAAATTAGACCGCGAAACAAGTCAAGGGGGGAAACGAAAGGACCCCCCAAACCGAAGCAGCCACCGCGGTTTATGACCGGAACTCCACCGATGAATCTCGCGGCGGAGTTCATTTCATCTTCTCCCCTATGTTTTCCAATGGACGCCTAAGGGTTCTACTCTCGTATTTCTCCATCTTCCTTGTAAATATTGTACAATTAATTGAATATATAAATCAGTTGCCATTTCAAATTTCATTGTTTTCTTCCCAATTTCTGGACTTAGGTTTTCTCTACCGGAATTTCTTTTCGACGCTCTGCTTCAAATTTTCATCAGGTATCTCTATGGAGTTTTTTTTATTCTTTTGCTCCAAATTTGATCTCCTCGACTAAACTGCATGAAACAATCCTTGCTTGATTCTCTCGCGATCTGAAGATTTCGACAATGTACAAAGATTTATGCGATTCATGCAATTGTAACTTTTTGGAAAATGAATTTTGCCTAGAATCCTTCTGATTTTCCGTTCAAAAAATTTGAGTCTTGAAATTGGATGGTTTGGCCCTTGAAATGAGTGCGCCTAATCGGTTTGTCCCTGAGGCTCGTGGCAATTGGCCGCTATTGCCTCCTCCTTATCCTGATCCAAGAAACCAATCGTTCTATCGGCCTACGATGTCTGGAGTTGTTAGTAGTTGGAGAATGCCTTCAAATTTTGGGATTCCACCATGGAACAATTGGAACATCGGGTATGAACATGAGTTTGGGCGTTCATATACACCTGGTTTTAATGATACTCGCAGAATGTTACCTTCCGGACCAGGAATCGAATTCCGTGAAGGTCAATTATCAGAGCGTTGGAATGTTGATAACTCGAATGAAATGAAAGTATGCAGACTGTTCCAACGCCGGAAGAAATGTGCATATGGGGATCAGTGTCGTTTTCTTCATGAAATTCCTGACAAAACTAGGGATTCTGGCTCCTCCAGCCAAAATTATGAGGTTAGTACAGTAGCTTTTGGTCATGTTATGGATCGAGGAAGTGGGTTTGATCAATTGGAAGAAGTCCGATCAAAAGTACAAACGAAGGTGGTTGTCCGTGGTGAGATTCCAAAGCCTTTAATTGCCAAATCAAGGCCCTGTTACCCCTGGCAGACCACTGGTCGCTGCCCATATGGGGCCGGTTGTCGCTTTGCCCATGGGGAAGCAGGTATTGTGAGATCCTTCTTTCATTTCCATTATCAATTTACGATTCCATATGTTTTCAAGTGACTTACAGCTCTCCAAGCAAGAATGAATGCCTCAGCATGTATAAAATGTTTCTTTTGCCATTTTCAGTTCCGTTACTTGTTCCGAGCCCTCAAATTTTATGCAATAAATCACCTTGGCTTGATTCAAATGAATCCTCTTTTGTTTTATTTTTTTGTTTTTGACAATTCTGGAGTGGAGATCAAACTTCTAGCCTGAAAGTTGTCACATATGCTTAATTTCGATGCGCGATGCTCATTTTGGCTCAAATGTATCCCCTTTGTAATCTTTTTTTTTTTAAATTATTTGTGTGTATGTGTGGGGTTGATTTTAGGCTTAGAATATATTAACACTAAACAGTTATTGCATAACTATATATACTAATGGACATTCTAACTCTGAAATAGGCAAGATTTACGAACTCGAACTATAAATGTCAACCATATGGATCTACTTATTCATCCCTGCTTGAATCGTTTTCATGAAATCAAAAGTTGGTGATTGTCAAATTACAGGCATTAATATTTCCATTGTCTTCTTTGTTTTTGGAGAAAATAGAACTACAGAAGCTCGAGCCTTGCAATGCATCACAACGTGGGAGCGTAGGTGGTGTCTCTGGGACTGCAACAACTACTGCTGCTGTCGAAGCTGGATTAAGGAGCAGCAGAGAAATTGGAACCGATTGTAAGAATAAAGGGCCAAGAATTAACCAATTCTTTGAATCAAAGGAGTCTAAGAAGTTGATTGGCATTTATGCCGACTGGCTTGAAGATTGAGTTTTCCACATGACTTGCAGTACAAGGATTTGACCAAATCCCGAGGCTTTTTCTAATTCTCATAAACTGATTGAGAAAATGAAGGTTCCTCCTGAACTTCATAACTTCATATTGATACTGAATATAGCGTATGGATAATAGATATCATTCTTCACAAGAATATGAAAGTTTTATGTCTTTTTTGTGCACGACTGGACTACAGTAGCAAAGGGCAAGAATCAAGATGATTAGTCTGTTCATGGTATTCCATCTTTCAACTTGTTTAGTTTTACTTTTTGACAGATATAGAAGTAGTATGAAGATTTGAACTCTAAATGAAAACTGTTTCCCACCCAGCCATTGAATTGACTGATAATAGTTATAGTTATGAATAATAATAGCCTGTTACCTAATTAGAACTTTAGAAGATAGCCTTTGACTTTATTAGAAGGCTGAAGACAGAGGATTATGGATTCATGTGGGACATGTAGATGAGAATTGAGAAGTGATGCAGGGTGGTAAATGCAACCTTTAAAAC ATGAGTGCGCCTAATCGGTTTGTCCCTGAGGCTCGTGGCAATTGGCCGCTATTGCCTCCTCCTTATCCTGATCCAAGAAACCAATCGTTCTATCGGCCTACGATGTCTGGAGTTGTTAGTAGTTGGAGAATGCCTTCAAATTTTGGGATTCCACCATGGAACAATTGGAACATCGGGTATGAACATGAGTTTGGGCGTTCATATACACCTGGTTTTAATGATACTCGCAGAATGTTACCTTCCGGACCAGGAATCGAATTCCGTGAAGGTCAATTATCAGAGCGTTGGAATGTTGATAACTCGAATGAAATGAAAGTATGCAGACTGTTCCAACGCCGGAAGAAATGTGCATATGGGGATCAGTGTCGTTTTCTTCATGAAATTCCTGACAAAACTAGGGATTCTGGCTCCTCCAGCCAAAATTATGAGGTTAGTACAGTAGCTTTTGGTCATGTTATGGATCGAGGAAGTGGGTTTGATCAATTGGAAGAAGTCCGATCAAAAGTACAAACGAAGGTGGTTGTCCGTGGTGAGATTCCAAAGCCTTTAATTGCCAAATCAAGGCCCTGTTACCCCTGGCAGACCACTGGTCGCTGCCCATATGGGGCCGGTTGTCGCTTTGCCCATGGGGAAGCAGAACTACAGAAGCTCGAGCCTTGCAATGCATCACAACGTGGGAGCGTAGGTGGTGTCTCTGGGACTGCAACAACTACTGCTGCTGTCGAAGCTGGATTAAGGAGCAGCAGAGAAATTGGAACCGATTGTAAGAATAAAGGGCCAAGAATTAACCAATTCTTTGAATCAAAGGAGTCTAAGAAGTTGATTGGCATTTATGCCGACTGGCTTGAAGATTGA MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGYEHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAAVEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED Homology
BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 2.4e-15 Identity = 57/188 (30.32%), Postives = 85/188 (45.21%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11 Identity = 59/211 (27.96%), Postives = 85/211 (40.28%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10 Identity = 38/110 (34.55%), Postives = 51/110 (46.36%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 9.0e-07 Identity = 39/127 (30.71%), Postives = 57/127 (44.88%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q69XQ3 (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0618100 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.4e-06 Identity = 36/141 (25.53%), Postives = 52/141 (36.88%), Query Frame = 0
BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_004135841.1 (zinc finger CCCH domain-containing protein 39 isoform X1 [Cucumis sativus] >XP_011659533.1 zinc finger CCCH domain-containing protein 39 isoform X1 [Cucumis sativus] >KGN45291.1 hypothetical protein Csa_016245 [Cucumis sativus]) HSP 1 Score: 604 bits (1557), Expect = 1.86e-218 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_008461087.1 (PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >XP_008461088.1 PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >XP_016902639.1 PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >XP_016902640.1 PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >KAA0058770.1 zinc finger CCCH domain-containing protein 39-like [Cucumis melo var. makuwa] >TYK10564.1 zinc finger CCCH domain-containing protein 39-like [Cucumis melo var. makuwa]) HSP 1 Score: 542 bits (1397), Expect = 3.18e-194 Identity = 258/284 (90.85%), Postives = 262/284 (92.25%), Query Frame = 0
BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_038897168.1 (zinc finger CCCH domain-containing protein 39-like isoform X1 [Benincasa hispida] >XP_038897169.1 zinc finger CCCH domain-containing protein 39-like isoform X1 [Benincasa hispida] >XP_038897170.1 zinc finger CCCH domain-containing protein 39-like isoform X1 [Benincasa hispida]) HSP 1 Score: 469 bits (1208), Expect = 3.24e-165 Identity = 232/290 (80.00%), Postives = 247/290 (85.17%), Query Frame = 0
BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_011659534.1 (uncharacterized protein LOC101205166 isoform X2 [Cucumis sativus]) HSP 1 Score: 464 bits (1194), Expect = 1.48e-163 Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0
BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_038897171.1 (zinc finger CCCH domain-containing protein 12-like isoform X2 [Benincasa hispida]) HSP 1 Score: 357 bits (917), Expect = 1.05e-121 Identity = 174/220 (79.09%), Postives = 186/220 (84.55%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A0A0KBW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433210 PE=4 SV=1) HSP 1 Score: 604 bits (1557), Expect = 8.99e-219 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A1S4E329 (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103499783 PE=4 SV=1) HSP 1 Score: 542 bits (1397), Expect = 1.54e-194 Identity = 258/284 (90.85%), Postives = 262/284 (92.25%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A5A7UUP3 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002180 PE=4 SV=1) HSP 1 Score: 542 bits (1397), Expect = 1.54e-194 Identity = 258/284 (90.85%), Postives = 262/284 (92.25%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A6J1HGS0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111464190 PE=4 SV=1) HSP 1 Score: 331 bits (849), Expect = 1.00e-110 Identity = 184/287 (64.11%), Postives = 205/287 (71.43%), Query Frame = 0
BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A6J1KMG0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111494633 PE=4 SV=1) HSP 1 Score: 325 bits (832), Expect = 3.95e-108 Identity = 184/288 (63.89%), Postives = 205/288 (71.18%), Query Frame = 0
BLAST of Cucsat.G3078 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein ) HSP 1 Score: 84.3 bits (207), Expect = 1.7e-16 Identity = 57/188 (30.32%), Postives = 85/188 (45.21%), Query Frame = 0
BLAST of Cucsat.G3078 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein ) HSP 1 Score: 72.0 bits (175), Expect = 8.6e-13 Identity = 59/211 (27.96%), Postives = 85/211 (40.28%), Query Frame = 0
BLAST of Cucsat.G3078 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein ) HSP 1 Score: 55.8 bits (133), Expect = 6.4e-08 Identity = 39/127 (30.71%), Postives = 57/127 (44.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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