Cucsat.G3078 (gene) Cucumber (B10) v3

Overview
NameCucsat.G3078
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionZinc finger CCCH domain-containing protein 39-like
Locationctg1041: 7394512 .. 7396879 (-)
RNA-Seq ExpressionCucsat.G3078
SyntenyCucsat.G3078
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAAAATTGATATTTAGAAGATGAAAATGAAAAGAAAAAAAGAAAAAGAAATCGAAACAGTTCAAAAATTAGACCGCGAAACAAGTCAAGGGGGGAAACGAAAGGACCCCCCAAACCGAAGCAGCCACCGCGGTTTATGACCGGAACTCCACCGATGAATCTCGCGGCGGAGTTCATTTCATCTTCTCCCCTATGTTTTCCAATGGACGCCTAAGGGTTCTACTCTCGTATTTCTCCATCTTCCTTGTAAATATTGTACAATTAATTGAATATATAAATCAGTTGCCATTTCAAATTTCATTGTTTTCTTCCCAATTTCTGGACTTAGGTTTTCTCTACCGGAATTTCTTTTCGACGCTCTGCTTCAAATTTTCATCAGGTATCTCTATGGAGTTTTTTTTATTCTTTTGCTCCAAATTTGATCTCCTCGACTAAACTGCATGAAACAATCCTTGCTTGATTCTCTCGCGATCTGAAGATTTCGACAATGTACAAAGATTTATGCGATTCATGCAATTGTAACTTTTTGGAAAATGAATTTTGCCTAGAATCCTTCTGATTTTCCGTTCAAAAAATTTGAGTCTTGAAATTGGATGGTTTGGCCCTTGAAATGAGTGCGCCTAATCGGTTTGTCCCTGAGGCTCGTGGCAATTGGCCGCTATTGCCTCCTCCTTATCCTGATCCAAGAAACCAATCGTTCTATCGGCCTACGATGTCTGGAGTTGTTAGTAGTTGGAGAATGCCTTCAAATTTTGGGATTCCACCATGGAACAATTGGAACATCGGGTATGAACATGAGTTTGGGCGTTCATATACACCTGGTTTTAATGATACTCGCAGAATGTTACCTTCCGGACCAGGAATCGAATTCCGTGAAGGTCAATTATCAGAGCGTTGGAATGTTGATAACTCGAATGAAATGAAAGTATGCAGACTGTTCCAACGCCGGAAGAAATGTGCATATGGGGATCAGTGTCGTTTTCTTCATGAAATTCCTGACAAAACTAGGGATTCTGGCTCCTCCAGCCAAAATTATGAGGTTAGTACAGTAGCTTTTGGTCATGTTATGGATCGAGGAAGTGGGTTTGATCAATTGGAAGAAGTCCGATCAAAAGTACAAACGAAGGTGGTTGTCCGTGGTGAGATTCCAAAGCCTTTAATTGCCAAATCAAGGCCCTGTTACCCCTGGCAGACCACTGGTCGCTGCCCATATGGGGCCGGTTGTCGCTTTGCCCATGGGGAAGCAGGTATTGTGAGATCCTTCTTTCATTTCCATTATCAATTTACGATTCCATATGTTTTCAAGTGACTTACAGCTCTCCAAGCAAGAATGAATGCCTCAGCATGTATAAAATGTTTCTTTTGCCATTTTCAGTTCCGTTACTTGTTCCGAGCCCTCAAATTTTATGCAATAAATCACCTTGGCTTGATTCAAATGAATCCTCTTTTGTTTTATTTTTTTGTTTTTGACAATTCTGGAGTGGAGATCAAACTTCTAGCCTGAAAGTTGTCACATATGCTTAATTTCGATGCGCGATGCTCATTTTGGCTCAAATGTATCCCCTTTGTAATCTTTTTTTTTTTAAATTATTTGTGTGTATGTGTGGGGTTGATTTTAGGCTTAGAATATATTAACACTAAACAGTTATTGCATAACTATATATACTAATGGACATTCTAACTCTGAAATAGGCAAGATTTACGAACTCGAACTATAAATGTCAACCATATGGATCTACTTATTCATCCCTGCTTGAATCGTTTTCATGAAATCAAAAGTTGGTGATTGTCAAATTACAGGCATTAATATTTCCATTGTCTTCTTTGTTTTTGGAGAAAATAGAACTACAGAAGCTCGAGCCTTGCAATGCATCACAACGTGGGAGCGTAGGTGGTGTCTCTGGGACTGCAACAACTACTGCTGCTGTCGAAGCTGGATTAAGGAGCAGCAGAGAAATTGGAACCGATTGTAAGAATAAAGGGCCAAGAATTAACCAATTCTTTGAATCAAAGGAGTCTAAGAAGTTGATTGGCATTTATGCCGACTGGCTTGAAGATTGAGTTTTCCACATGACTTGCAGTACAAGGATTTGACCAAATCCCGAGGCTTTTTCTAATTCTCATAAACTGATTGAGAAAATGAAGGTTCCTCCTGAACTTCATAACTTCATATTGATACTGAATATAGCGTATGGATAATAGATATCATTCTTCACAAGAATATGAAAGTTTTATGTCTTTTTTGTGCACGACTGGACTACAGTAGCAAAGGGCAAGAATCAAGATGATTAGTCTGTTCATGGTATTCCATCTTTCAACTTGTTTAGTTTTACTTTTTGACAGATATAGAAGTAGTATGAAGATTTGAACTCTAAATGAAAACTGTTTCCCACCCAGCCATTGAATTGACTGATAATAGTTATAGTTATGAATAATAATAGCCTGTTACCTAATTAGAACTTTAGAAGATAGCCTTTGACTTTATTAGAAGGCTGAAGACAGAGGATTATGGATTCATGTGGGACATGTAGATGAGAATTGAGAAGTGATGCAGGGTGGTAAATGCAACCTTTAAAAC

Coding sequence (CDS)

ATGAGTGCGCCTAATCGGTTTGTCCCTGAGGCTCGTGGCAATTGGCCGCTATTGCCTCCTCCTTATCCTGATCCAAGAAACCAATCGTTCTATCGGCCTACGATGTCTGGAGTTGTTAGTAGTTGGAGAATGCCTTCAAATTTTGGGATTCCACCATGGAACAATTGGAACATCGGGTATGAACATGAGTTTGGGCGTTCATATACACCTGGTTTTAATGATACTCGCAGAATGTTACCTTCCGGACCAGGAATCGAATTCCGTGAAGGTCAATTATCAGAGCGTTGGAATGTTGATAACTCGAATGAAATGAAAGTATGCAGACTGTTCCAACGCCGGAAGAAATGTGCATATGGGGATCAGTGTCGTTTTCTTCATGAAATTCCTGACAAAACTAGGGATTCTGGCTCCTCCAGCCAAAATTATGAGGTTAGTACAGTAGCTTTTGGTCATGTTATGGATCGAGGAAGTGGGTTTGATCAATTGGAAGAAGTCCGATCAAAAGTACAAACGAAGGTGGTTGTCCGTGGTGAGATTCCAAAGCCTTTAATTGCCAAATCAAGGCCCTGTTACCCCTGGCAGACCACTGGTCGCTGCCCATATGGGGCCGGTTGTCGCTTTGCCCATGGGGAAGCAGAACTACAGAAGCTCGAGCCTTGCAATGCATCACAACGTGGGAGCGTAGGTGGTGTCTCTGGGACTGCAACAACTACTGCTGCTGTCGAAGCTGGATTAAGGAGCAGCAGAGAAATTGGAACCGATTGTAAGAATAAAGGGCCAAGAATTAACCAATTCTTTGAATCAAAGGAGTCTAAGAAGTTGATTGGCATTTATGCCGACTGGCTTGAAGATTGA

Protein sequence

MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGYEHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAAVEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED
Homology
BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-15
Identity = 57/188 (30.32%), Postives = 85/188 (45.21%), Query Frame = 0

Query: 104 MKVCRLFQRRKKCAYGDQCRFLHEIPDKTR-DSGS--SSQNYEVSTVAFGHVMDRGSGFD 163
           MK+CR F   ++C YGD+C F+HE   K R DSG    S    V   A     D  S   
Sbjct: 186 MKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLI 245

Query: 164 QLEEVRSKVQTKVVVRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAEL-QKLEP 223
           ++    S      +  G + K +  K+R C  +  TG+CP+G  C FAHG+AEL   +  
Sbjct: 246 EVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGR 305

Query: 224 CNASQRGSVGGVSGTATTTAAVEAGLRSSREIGTD---CKNKGPRINQFFESKESKKLIG 283
                  +V  V+  A   A     ++   ++  D      +G R     +  +SKK+  
Sbjct: 306 VEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINR 365

Query: 284 IYADWLED 285
           IY DW++D
Sbjct: 366 IYGDWIDD 373

BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11
Identity = 59/211 (27.96%), Postives = 85/211 (40.28%), Query Frame = 0

Query: 107 CRLFQRRKKCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVR 166
           C+ F   + C YG+ C FLH+   + R+S + S    +    +G     GSG   +    
Sbjct: 178 CKKFYTEEGCPYGESCTFLHDEASRNRESVAIS----LGPGGYGSGGGGGSGGGSVGGGG 237

Query: 167 SKVQTKVVVRG---------EIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKL 226
           S     V+  G         +I KP   K+R C  W+ TG CP+GA C FAHG AEL + 
Sbjct: 238 SSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRF 297

Query: 227 EPCNASQRGSVG---------------GVSGTAT---------TTAAVEAGLRSSREIGT 285
                 + G  G               G+S T T           A+   G+   R    
Sbjct: 298 GGGLVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSA 357

BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10
Identity = 38/110 (34.55%), Postives = 51/110 (46.36%), Query Frame = 0

Query: 107 CRLFQRRKKCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVR 166
           C+ F   + C YGD C FLH+   K R+S + S +  V           G G        
Sbjct: 175 CKKFYTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGG-------GGGGGSYNSAAAA 234

Query: 167 SKVQTKVVVRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQK 217
           +   +     G + KP   K+R C  W+ TG CP+G+ C FAHG AEL K
Sbjct: 235 AASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHK 277

BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.0e-07
Identity = 39/127 (30.71%), Postives = 57/127 (44.88%), Query Frame = 0

Query: 176 RGEIPKPLIA---KSRPCYPWQTTGRCPYGAGCRFAHGEAELQKL--------------E 235
           RG + + L +   K+R C  WQTTG CP+G+ C FAHG +EL                  
Sbjct: 132 RGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSA 191

Query: 236 PCNASQRGSVGGVSGTATTTAAVEAGLRSSR-EIGTDCKNKGPRINQFFESKESKKLIGI 285
             +  QRG V       T T+ V  G+ S R       K  G R  + ++  +  K+  +
Sbjct: 192 TLDTKQRGQVD------TVTSLVSPGVSSQRTSSAVTQKPNGVRTQRKWKGPD--KISRV 250

BLAST of Cucsat.G3078 vs. ExPASy Swiss-Prot
Match: Q69XQ3 (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-06
Identity = 36/141 (25.53%), Postives = 52/141 (36.88%), Query Frame = 0

Query: 76  RRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGDQCRFLHEIPDKTRDS 135
           +R  P G     +  + SE   V   +++K C  F     C +G  C FLH  P   + +
Sbjct: 7   KRAAPEGTNGAAKRARASESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQAA 66

Query: 136 GSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIPKPLIAKSRPCYPWQT 195
              + +   +  A    M  G G                     P     K+R C  + T
Sbjct: 67  AKMTSHGGTAVAAPPGRMPLGPG-----------------APNGPPTSSVKTRMCNKYNT 126

Query: 196 TGRCPYGAGCRFAHGEAELQK 217
              C +G+ C FAHGE EL K
Sbjct: 127 AEGCKWGSKCHFAHGERELGK 130

BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_004135841.1 (zinc finger CCCH domain-containing protein 39 isoform X1 [Cucumis sativus] >XP_011659533.1 zinc finger CCCH domain-containing protein 39 isoform X1 [Cucumis sativus] >KGN45291.1 hypothetical protein Csa_016245 [Cucumis sativus])

HSP 1 Score: 604 bits (1557), Expect = 1.86e-218
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0

Query: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60
           MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY
Sbjct: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60

Query: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120
           EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD
Sbjct: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120

Query: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180
           QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP
Sbjct: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180

Query: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA 240
           KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA
Sbjct: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA 240

Query: 241 VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284
           VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED
Sbjct: 241 VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284

BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_008461087.1 (PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >XP_008461088.1 PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >XP_016902639.1 PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >XP_016902640.1 PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >KAA0058770.1 zinc finger CCCH domain-containing protein 39-like [Cucumis melo var. makuwa] >TYK10564.1 zinc finger CCCH domain-containing protein 39-like [Cucumis melo var. makuwa])

HSP 1 Score: 542 bits (1397), Expect = 3.18e-194
Identity = 258/284 (90.85%), Postives = 262/284 (92.25%), Query Frame = 0

Query: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60
           MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYR TMSG VSSWRMPSNFGIPPWNNWNIGY
Sbjct: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRSTMSGAVSSWRMPSNFGIPPWNNWNIGY 60

Query: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120
           EHE GRSY PGFNDT RMLPS PGIEF EGQLSERWNVD+SNEMKVCRLFQRRKKCAYGD
Sbjct: 61  EHELGRSYRPGFNDTHRMLPSRPGIEFHEGQLSERWNVDDSNEMKVCRLFQRRKKCAYGD 120

Query: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180
           QCRFLHEIP+KTRDSGSSSQNYEV          R SGFDQLEEVRSKVQTKVVVRGEIP
Sbjct: 121 QCRFLHEIPEKTRDSGSSSQNYEV----------RRSGFDQLEEVRSKVQTKVVVRGEIP 180

Query: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA 240
           KPLI K RPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPC+ASQRGSVGGVS TATTTA 
Sbjct: 181 KPLIGKPRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCSASQRGSVGGVSATATTTAP 240

Query: 241 VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284
           VEAGLRSS+EIGTDCKNKGPRINQFFESKESKKLIGIYADWLED
Sbjct: 241 VEAGLRSSKEIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 274

BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_038897168.1 (zinc finger CCCH domain-containing protein 39-like isoform X1 [Benincasa hispida] >XP_038897169.1 zinc finger CCCH domain-containing protein 39-like isoform X1 [Benincasa hispida] >XP_038897170.1 zinc finger CCCH domain-containing protein 39-like isoform X1 [Benincasa hispida])

HSP 1 Score: 469 bits (1208), Expect = 3.24e-165
Identity = 232/290 (80.00%), Postives = 247/290 (85.17%), Query Frame = 0

Query: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60
           MSAPNRFVPEARG+W  LPP YPD R QSF++PTMS  VSSW MPSN  IPPWNN N+GY
Sbjct: 1   MSAPNRFVPEARGDWRPLPP-YPDARLQSFHQPTMSETVSSWGMPSNIRIPPWNNRNVGY 60

Query: 61  EHEF--GRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVD----NSNEMKVCRLFQRRK 120
           +HE   GR YTPGFNDT R LPS PGIEF EGQLSER  VD     SNEMKVCR FQRR+
Sbjct: 61  DHELDLGRLYTPGFNDTHRRLPSTPGIEFHEGQLSERSIVDCRTGTSNEMKVCRQFQRRR 120

Query: 121 KCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVV 180
           KCAYGDQCRFLHEIP+KTR+ GSSSQNYEV  VA GHV+DR SGFDQLEEVRSKVQTK+V
Sbjct: 121 KCAYGDQCRFLHEIPEKTREFGSSSQNYEVRAVASGHVVDRRSGFDQLEEVRSKVQTKIV 180

Query: 181 VRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGT 240
           VRGEIPKPLI K+RPCYPWQTTGRCPYGAGCRFAHGEAELQK EPC+A+QRGSVGG S  
Sbjct: 181 VRGEIPKPLICKTRPCYPWQTTGRCPYGAGCRFAHGEAELQKPEPCSAAQRGSVGGAS-- 240

Query: 241 ATTTAAVEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284
            TT+   EAGLRSS  IGTDCKNKGPR+NQFFESKESKKLIGIYADWLED
Sbjct: 241 LTTSTVTEAGLRSSTGIGTDCKNKGPRMNQFFESKESKKLIGIYADWLED 287

BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_011659534.1 (uncharacterized protein LOC101205166 isoform X2 [Cucumis sativus])

HSP 1 Score: 464 bits (1194), Expect = 1.48e-163
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0

Query: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60
           MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY
Sbjct: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60

Query: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120
           EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD
Sbjct: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120

Query: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180
           QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP
Sbjct: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180

Query: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLE 218
           KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAE +  E
Sbjct: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAENRTTE 218

BLAST of Cucsat.G3078 vs. NCBI nr
Match: XP_038897171.1 (zinc finger CCCH domain-containing protein 12-like isoform X2 [Benincasa hispida])

HSP 1 Score: 357 bits (917), Expect = 1.05e-121
Identity = 174/220 (79.09%), Postives = 186/220 (84.55%), Query Frame = 0

Query: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60
           MSAPNRFVPEARG+W  LPP YPD R QSF++PTMS  VSSW MPSN  IPPWNN N+GY
Sbjct: 1   MSAPNRFVPEARGDWRPLPP-YPDARLQSFHQPTMSETVSSWGMPSNIRIPPWNNRNVGY 60

Query: 61  EHEF--GRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVD----NSNEMKVCRLFQRRK 120
           +HE   GR YTPGFNDT R LPS PGIEF EGQLSER  VD     SNEMKVCR FQRR+
Sbjct: 61  DHELDLGRLYTPGFNDTHRRLPSTPGIEFHEGQLSERSIVDCRTGTSNEMKVCRQFQRRR 120

Query: 121 KCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVV 180
           KCAYGDQCRFLHEIP+KTR+ GSSSQNYEV  VA GHV+DR SGFDQLEEVRSKVQTK+V
Sbjct: 121 KCAYGDQCRFLHEIPEKTREFGSSSQNYEVRAVASGHVVDRRSGFDQLEEVRSKVQTKIV 180

Query: 181 VRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAEL 214
           VRGEIPKPLI K+RPCYPWQTTGRCPYGAGCRFAHGEA +
Sbjct: 181 VRGEIPKPLICKTRPCYPWQTTGRCPYGAGCRFAHGEAGI 219

BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A0A0KBW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433210 PE=4 SV=1)

HSP 1 Score: 604 bits (1557), Expect = 8.99e-219
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0

Query: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60
           MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY
Sbjct: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60

Query: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120
           EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD
Sbjct: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120

Query: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180
           QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP
Sbjct: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180

Query: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA 240
           KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA
Sbjct: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA 240

Query: 241 VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284
           VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED
Sbjct: 241 VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284

BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A1S4E329 (zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103499783 PE=4 SV=1)

HSP 1 Score: 542 bits (1397), Expect = 1.54e-194
Identity = 258/284 (90.85%), Postives = 262/284 (92.25%), Query Frame = 0

Query: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60
           MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYR TMSG VSSWRMPSNFGIPPWNNWNIGY
Sbjct: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRSTMSGAVSSWRMPSNFGIPPWNNWNIGY 60

Query: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120
           EHE GRSY PGFNDT RMLPS PGIEF EGQLSERWNVD+SNEMKVCRLFQRRKKCAYGD
Sbjct: 61  EHELGRSYRPGFNDTHRMLPSRPGIEFHEGQLSERWNVDDSNEMKVCRLFQRRKKCAYGD 120

Query: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180
           QCRFLHEIP+KTRDSGSSSQNYEV          R SGFDQLEEVRSKVQTKVVVRGEIP
Sbjct: 121 QCRFLHEIPEKTRDSGSSSQNYEV----------RRSGFDQLEEVRSKVQTKVVVRGEIP 180

Query: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA 240
           KPLI K RPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPC+ASQRGSVGGVS TATTTA 
Sbjct: 181 KPLIGKPRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCSASQRGSVGGVSATATTTAP 240

Query: 241 VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284
           VEAGLRSS+EIGTDCKNKGPRINQFFESKESKKLIGIYADWLED
Sbjct: 241 VEAGLRSSKEIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 274

BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A5A7UUP3 (Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002180 PE=4 SV=1)

HSP 1 Score: 542 bits (1397), Expect = 1.54e-194
Identity = 258/284 (90.85%), Postives = 262/284 (92.25%), Query Frame = 0

Query: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIGY 60
           MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYR TMSG VSSWRMPSNFGIPPWNNWNIGY
Sbjct: 1   MSAPNRFVPEARGNWPLLPPPYPDPRNQSFYRSTMSGAVSSWRMPSNFGIPPWNNWNIGY 60

Query: 61  EHEFGRSYTPGFNDTRRMLPSGPGIEFREGQLSERWNVDNSNEMKVCRLFQRRKKCAYGD 120
           EHE GRSY PGFNDT RMLPS PGIEF EGQLSERWNVD+SNEMKVCRLFQRRKKCAYGD
Sbjct: 61  EHELGRSYRPGFNDTHRMLPSRPGIEFHEGQLSERWNVDDSNEMKVCRLFQRRKKCAYGD 120

Query: 121 QCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGEIP 180
           QCRFLHEIP+KTRDSGSSSQNYEV          R SGFDQLEEVRSKVQTKVVVRGEIP
Sbjct: 121 QCRFLHEIPEKTRDSGSSSQNYEV----------RRSGFDQLEEVRSKVQTKVVVRGEIP 180

Query: 181 KPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTTAA 240
           KPLI K RPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPC+ASQRGSVGGVS TATTTA 
Sbjct: 181 KPLIGKPRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCSASQRGSVGGVSATATTTAP 240

Query: 241 VEAGLRSSREIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 284
           VEAGLRSS+EIGTDCKNKGPRINQFFESKESKKLIGIYADWLED
Sbjct: 241 VEAGLRSSKEIGTDCKNKGPRINQFFESKESKKLIGIYADWLED 274

BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A6J1HGS0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111464190 PE=4 SV=1)

HSP 1 Score: 331 bits (849), Expect = 1.00e-110
Identity = 184/287 (64.11%), Postives = 205/287 (71.43%), Query Frame = 0

Query: 10  EARGNWP-LLPPPYPDP----RNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIG-YEHE 69
           EARG WP L PPP P      R  SFY+PTMS +V S  MPSNF IP WNN +IG +++E
Sbjct: 16  EARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFEIPQWNNVHIGLHDNE 75

Query: 70  FGRSYTPGFND-TRRMLPSGPGIEFREGQLSERWNVDN----SNEMKVCRLFQRRKKCAY 129
               Y    ND TR  LPS  GIEF E +L E   V++    S EMKVCR FQRR KCAY
Sbjct: 76  LEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTEMKVCRQFQRRGKCAY 135

Query: 130 GDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGE 189
           GDQCRFLH+IP+ T+D GSSSQN+EV  VA GHVMD  S FDQ EEVRSKVQTK+V R E
Sbjct: 136 GDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSMFDQFEEVRSKVQTKIVARSE 195

Query: 190 IPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTT 249
           IP P+  K+R CY WQTTG C YG  CRFAHGEAELQKLE C+ S+RG VGG S  ATT 
Sbjct: 196 IPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSTSERGRVGGAS--ATTK 255

Query: 250 AAVEAGLRSSREIGTDCKNKGP-RINQFFESKESKKLIGIYADWLED 284
           AA  AGLR SR IGTDCKNKG  R+ Q F+SKE KKLIGIYADWLE+
Sbjct: 256 AAAAAGLRCSRGIGTDCKNKGSSRMKQLFKSKEHKKLIGIYADWLEN 300

BLAST of Cucsat.G3078 vs. ExPASy TrEMBL
Match: A0A6J1KMG0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111494633 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 3.95e-108
Identity = 184/288 (63.89%), Postives = 205/288 (71.18%), Query Frame = 0

Query: 10  EARGNWP-LLPPPYPDP----RNQSFYRPTMSGVVSSWRMPSNFGIPPWNNWNIG-YEHE 69
           EARG WP L PPP+P      R  SFY+PTMS VV S  MPSNF IP WNN NIG +++E
Sbjct: 16  EARGVWPPLRPPPWPPRYSIGRFPSFYQPTMSEVVPSRVMPSNFEIPQWNNVNIGLHDNE 75

Query: 70  FGRSYTPGFND-TRRMLPSGPGIEFREGQLSERWNVDN----SNEMKVCRLFQRRKKCAY 129
               Y    ND TR  LPS  GIEF E +L E   V++    + EMKVCR FQRR KCAY
Sbjct: 76  LEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMATEMKVCRQFQRRGKCAY 135

Query: 130 GDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVRSKVQTKVVVRGE 189
           GDQCRFLH+IP+ T+D G SSQN+EV  VA GHVMDR S FDQ EEVRSKVQTK+V R E
Sbjct: 136 GDQCRFLHKIPENTKDFGYSSQNHEVRAVASGHVMDRKSMFDQFEEVRSKVQTKIVARSE 195

Query: 190 IPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKLEPCNASQRGSVGGVSGTATTT 249
           IP P+  K+R CY WQTTG C YG  CRFAHGEAELQKLE C+ S+RG VGG S  ATT 
Sbjct: 196 IPVPVSCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLESCSPSERGRVGGAS--ATTK 255

Query: 250 AAVEAGLRSSREIGTDCKNKGP-RINQFFESKE-SKKLIGIYADWLED 284
           AA  AGLR SR IGTD KNKG  R+ Q F+SKE  KKLIGIYADWLE+
Sbjct: 256 AAAAAGLRCSRGIGTDGKNKGSSRMKQLFKSKEHKKKLIGIYADWLEN 301

BLAST of Cucsat.G3078 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-16
Identity = 57/188 (30.32%), Postives = 85/188 (45.21%), Query Frame = 0

Query: 104 MKVCRLFQRRKKCAYGDQCRFLHEIPDKTR-DSGS--SSQNYEVSTVAFGHVMDRGSGFD 163
           MK+CR F   ++C YGD+C F+HE   K R DSG    S    V   A     D  S   
Sbjct: 186 MKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNLI 245

Query: 164 QLEEVRSKVQTKVVVRGEIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAEL-QKLEP 223
           ++    S      +  G + K +  K+R C  +  TG+CP+G  C FAHG+AEL   +  
Sbjct: 246 EVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSVGR 305

Query: 224 CNASQRGSVGGVSGTATTTAAVEAGLRSSREIGTD---CKNKGPRINQFFESKESKKLIG 283
                  +V  V+  A   A     ++   ++  D      +G R     +  +SKK+  
Sbjct: 306 VEGEAMNAVASVNKQAVVPANEAFAMKPITQVTADSSGLNEEGRRKKCLLKWSDSKKINR 365

Query: 284 IYADWLED 285
           IY DW++D
Sbjct: 366 IYGDWIDD 373

BLAST of Cucsat.G3078 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 72.0 bits (175), Expect = 8.6e-13
Identity = 59/211 (27.96%), Postives = 85/211 (40.28%), Query Frame = 0

Query: 107 CRLFQRRKKCAYGDQCRFLHEIPDKTRDSGSSSQNYEVSTVAFGHVMDRGSGFDQLEEVR 166
           C+ F   + C YG+ C FLH+   + R+S + S    +    +G     GSG   +    
Sbjct: 178 CKKFYTEEGCPYGESCTFLHDEASRNRESVAIS----LGPGGYGSGGGGGSGGGSVGGGG 237

Query: 167 SKVQTKVVVRG---------EIPKPLIAKSRPCYPWQTTGRCPYGAGCRFAHGEAELQKL 226
           S     V+  G         +I KP   K+R C  W+ TG CP+GA C FAHG AEL + 
Sbjct: 238 SSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRF 297

Query: 227 EPCNASQRGSVG---------------GVSGTAT---------TTAAVEAGLRSSREIGT 285
                 + G  G               G+S T T           A+   G+   R    
Sbjct: 298 GGGLVEEEGKDGVSPNPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASSA 357

BLAST of Cucsat.G3078 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-08
Identity = 39/127 (30.71%), Postives = 57/127 (44.88%), Query Frame = 0

Query: 176 RGEIPKPLIA---KSRPCYPWQTTGRCPYGAGCRFAHGEAELQKL--------------E 235
           RG + + L +   K+R C  WQTTG CP+G+ C FAHG +EL                  
Sbjct: 132 RGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSA 191

Query: 236 PCNASQRGSVGGVSGTATTTAAVEAGLRSSR-EIGTDCKNKGPRINQFFESKESKKLIGI 285
             +  QRG V       T T+ V  G+ S R       K  G R  + ++  +  K+  +
Sbjct: 192 TLDTKQRGQVD------TVTSLVSPGVSSQRTSSAVTQKPNGVRTQRKWKGPD--KISRV 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LT812.4e-1530.32Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9LQM31.2e-1127.96Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q84UQ31.0e-1034.55Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX... [more]
Q5PP659.0e-0730.71Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q69XQ33.4e-0625.53Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica OX... [more]
Match NameE-valueIdentityDescription
XP_004135841.11.86e-218100.00zinc finger CCCH domain-containing protein 39 isoform X1 [Cucumis sativus] >XP_0... [more]
XP_008461087.13.18e-19490.85PREDICTED: zinc finger CCCH domain-containing protein 39-like [Cucumis melo] >XP... [more]
XP_038897168.13.24e-16580.00zinc finger CCCH domain-containing protein 39-like isoform X1 [Benincasa hispida... [more]
XP_011659534.11.48e-16398.17uncharacterized protein LOC101205166 isoform X2 [Cucumis sativus][more]
XP_038897171.11.05e-12179.09zinc finger CCCH domain-containing protein 12-like isoform X2 [Benincasa hispida... [more]
Match NameE-valueIdentityDescription
A0A0A0KBW48.99e-219100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433210 PE=4 SV=1[more]
A0A1S4E3291.54e-19490.85zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A5A7UUP31.54e-19490.85Zinc finger CCCH domain-containing protein 39-like OS=Cucumis melo var. makuwa O... [more]
A0A6J1HGS01.00e-11064.11zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1KMG03.95e-10863.89zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G... [more]
Match NameE-valueIdentityDescription
AT3G19360.11.7e-1630.32Zinc finger (CCCH-type) family protein [more]
AT1G32360.18.6e-1327.96Zinc finger (CCCH-type) family protein [more]
AT2G35430.16.4e-0830.71Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 186..211
e-value: 4.3E-4
score: 29.6
coord: 101..128
e-value: 1.0E-4
score: 31.6
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 105..126
e-value: 7.2E-7
score: 29.0
coord: 186..211
e-value: 4.0E-7
score: 29.8
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 184..212
score: 14.370583
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 101..129
score: 14.962095
NoneNo IPR availableGENE3D4.10.1000.10coord: 93..155
e-value: 1.0E-6
score: 30.6
NoneNo IPR availableGENE3D4.10.1000.10coord: 182..217
e-value: 1.0E-12
score: 49.2
NoneNo IPR availablePANTHERPTHR12547:SF121ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39coord: 26..282
NoneNo IPR availablePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 26..282
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 103..130
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 182..215

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G3078.T1Cucsat.G3078.T1mRNA
Cucsat.G3078.T2Cucsat.G3078.T2mRNA
Cucsat.G3078.T3Cucsat.G3078.T3mRNA
Cucsat.G3078.T4Cucsat.G3078.T4mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding