Cucsat.G2416 (gene) Cucumber (B10) v3

Overview
NameCucsat.G2416
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description50S ribosomal protein L4
Locationctg1002: 4785120 .. 4786647 (+)
RNA-Seq ExpressionCucsat.G2416
SyntenyCucsat.G2416
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAATTAACAAATTTAGGGTTTGGGGCAATTTCTCCCGATTTCTCCCGATTAGGGCTTCACGCCATCTCTCTCTCTATTTCTCCCGATTAGGGTTTCGCGGCTCCATTTTCAAAGCATCCGAAAAAGATCGACCATGTATAAGTGTTCACATCACACCAGCAATTGAGGCCCAAATTTGAAGTTTGAATTCGCGAAGAAGAATGGAGGTGGCCCAAATTGTGGTATCTGGATCCAGTCCGGCCTGTTAACGCTTTCGGTTTCCGCATCTCTTTTTGTTCTTCGTCTCCCTCGTGAAGCTTTGCACATCCCCACATACCAGCAAGTGCAGCGCCGCTTCTTCCGGCCGCCGTCTCAGCTGTTACCGTCGCCGCACATTGCACTCTCATCTTTCGACGAAATATCCGCCGCCCTCCCTCTCACAAAATCTCTCGCCCTTCGAGCTATCAGAGTTGCTTCTCTCTGTTCTTCTTTCTCTCGGAAACACGGTGGTTCAGAACCTTGCTGTTGTTGATATTGGCCGCCGACGTTCATCTTTCAGATCCTCAAGGTTTTTATTTTTTCTTTTATTTTTGTTTATTCGCTTCACCTATGTGCAACTAGTCTAATTGATGATAGAAACTAGGAATTCATATATCACAAATTGGAATGAAGAGAAGATCGAACTAATGTATTGAAAGGAACAAAGAATCATACAACTGTTATTCGAATAAGTAAATAGTGAGGAAAAAAGGTGAACAAGGATAAAAGAAAATCACCTTGAAGATTGACATTATCAATTAAAAATTAAGTAAAATTTAATGGACAAACGAAATAGAAAACTAACTTGAGTTTTAGTTCGATTGAATAATTTTTGAGTTGGTACAGGAAGGCGTTTGCATATGAACCAGCGTAAATTTAAAAAAGAAAGATTTCTCTTGTGTGGTATAATTAGAAACAGATTTCTGAAGTATAAAATGAAAAACCCGTCAAATCCGAAATTTGTTTCAAAGAAACAATACTTCATTTCACAACTCATTTTAATATATATATATATATATATATATATATATATACCAATCCAAACACTTGCAATATTCCAAATTCAGAAGTTCAACCAGGGGTACATGATCTTTATTATACATAGTTTCGATCTAGTTTTGATTGTGAAACTAGGTTGATGGTAAGGTATATGGCTAAAATTCCAGAAAACTTACTCTTGTAGATGACTAGGTAGCTGTCTGATTGTTGCAAAACCACTACATCGATTCTTTTAGTGGTGCCCCGTTAATATGGCAATCTCAGTTTCGAGAAGGCTGCTGCGCTCTGTGGGGTCCTTATCAACGTTTGGACAATGTAATTCTTCATGTACTATGAGTCGGTCATTTTCTAATCCCCATGGTAATGCGTTCTCATTTCCACCTTGTTTCATAAAAGTTTCTTGCCTGCAATTTTTTTCTTGTATGTATGGATGCTTTCATCTAATTCTAATTCATTAACTTTTATTATATGTTTGAGTAGAAATTTATGGCCATGTTAGTGGGAGTAGCTCTACGTTTGCAAGCCGTTCTACTCTTTTGAAGGTACTCTTTCAACATATGCTATCTTTCTGTTCAAGGTTTTATCATTTATAAGGGACACCGGACATGATATTGAAGTTTGTAGAATGTGGATTAAAATCACTTCTTGATATGTTTGCGTGTCATTTGTTTTCTTTTCGTCACGCACCTATAAAATTATTTTTGTCTGACCATTGTGTATGAAGCAGGCTGGATCCTTTCTTGCTTCCCGAGGGTTTTGCACCTCAATTTTGACTCCTGAATCAAGCAATAATGCATTTCCTTCTGAGTTACTGTCTGCTAAGCCGGTGGCATCCGAAGAGCGCAAGATAGGTAGCAACATTTTTCCTGCAACCTTCGTATGATTGTATGCAACTATTATGGTGGGAACAATTGATATATCACTTTTGTGGTTAATAAATTATGTTGCATCATTAGGGCTTTATCAGGACCTGATGATTCCTGTGACAAACTTTGAAAATGAAGACAAAGGCTTCATGGTCTTGGCTGGAGATGTTTTTGACCTTCCAATCAGGAAGGACATCATTCATCGGGTTGTTAGATGGCAGCTTGCAAAGAGACAGCAGGTATTTGTTGTTACCTCATATTGCGCAAGAGCCTGAGAATAGAGACTGATTGGAAAGAGATAGTGTTCATTGAGGGATTTATTTTTCTTTATGAGTATCTACTTTGTTCCTTTCTACTTATTTGAATAATATATTTCCTTAATTATTTGCACCAGAGGATAATATTACAAGGCATAGTGACATACCCACTTTTGATTTTGCATTTTAATTTTGTATTTAAATGAAACCAATATACTTGTGCTACGAAGGAGGCAAATTCATCAGCAATTTCATTAACATATGTCCATGCATTGGAAATAGCAATTTTTTTGAAACAGAAAAAGATTTGTATATTGATTGTTATGGTCAGTTTACGTGTATCTTGAATCTCAAGGGAGTTCTGTCTAATAATTTTGCTATTTTTAATGTTTATAAGGTAATTGATCTATTATATTCGGTGTCAATATATTTTACTAGCTAGTTATCCTGCAAGATGCAAGTTTTGGGTAAGTTCTTAGAAGTGATTATTAAGTACTAAGCATCTCGAGTGATGACAGGGAACACATTCGACAAAAACAATTAGTGAGGTTAGCGGAACAGGGAGAAAGCCATGGAAACAAAAAGGTACTGGGAGAGCAAGACATGGAACATTGCGTGGTCCCCAGGTAGCTAAGATTTTCTTTGAATAATGTTCAAAAGATTATTGCCAAAGATATTATACAATAGTTGCTAACATGCTGGATGATGATTACAGTTCAGAGGTGGTGCAACTATGCATGGACCCAAACCACGAAGTCATGCCTTTAAGCTTAATAAGAAAGTTCGTCGCTTGGGTTTGATGATTGCTCTTTCAGCTCGTGTTGCAGAAGGAAAGGTATGTGTTTCTTTCTTTCTACCATTTTAGCAGGATGGATTATTTTATAAAATGGTTTGGCTCGCGTGCACATCCTAACAGATATTTTCTTTCCAGTTGCTTCTGAAACCTCATTTTGGGAAGTTTTTAACTTGCAGCTTCTGGTATTTGATAATTTGGACGTCACTACGCATAAGACGAAGAATATGGTGAAATATGTCAGTAAAATGGAGAATACCAAAAAAGTATTACTAGTTGATGGTGGTCCCATAGATGAGAAGCTGAAGTTGGCCACGCAAAACCTTCATTATGTCAACGTTTTGCCATCTATTGTAAGTTTGCTTGATTGCTTCCCCTTTTTTGTTTGTTTCATTCATGATAAATGAATTTACATTGAAGTTGAATGTAAAATGATTATTGACTTTTGTTCTATAGGGTTTGAATGTTTACAGCATTCTTCTACACGATACTCTTGTGATGTCTCGTGATGCTGTAGAAAGAATTGTTACCCGGATGCACACTCCAATCAACCGCTGAAGCCGCAGTGCATTTCTCCTGAATTATATGTTCAACTTCAGTTTTAGCTCAGATCAGCAATAACCTTTATTGATGTTTCCCCCCTTTTGTTGCAGGAAGGGGTGAAAACCTGTTTGTTGTTTCCGTTAAAATATTGATCACACTGGAGTTTGAAATTTCACTTGTACTGATCAAAGACATCAGATAGTAAGTTTTGAAGCTGTAGTTTGTGGTGTTCGAAAATAACAAAAAGAACCTTTCTTACTGCCAGATTGTCAAGTTCTGCAAATTTTTCTTTTACAAATCAAAATTTTTCTGTTTTGATTCGATGTTTTGGTGGATGATTTCCAACTTTAGAAACCGCCTAAATGAAGCAAAAAGAATTGGATGAATGAGAGATGGAAGGACATTCTTTGCTTTTCCGAGCCTATTTATATATGCAGATCCAGCTATACTGGCGTCTGGGTTGGCCGGCCACTGATTCCCCAACAATATCATTTTTAATCATGCATGTTATAATTATTTCCCAAAGTATTTGCTAAAAGCATTTCTGAATCCATTGATTGTCCCTTTACCCCATTCAGGTCTGGGTCTGAAATGCATTCCATTCTCATTCATCCCATATTTTGGTTCTTATACTCTCTGAATCTTATTGTTTCCACTGATTTCTTTAAGCATATTATTGAGTCTTCCGTATTACGGATTTGGAAACCACAAGACAATGTTTCAGACGGGAGCTGATTCACCATTTTCTGAACTTGAAGGCGAAGCATCATTAATCTTTTGCAACAAGTGAATACTTTGAAAGCTTTGCAACGATTGAGTAA

Coding sequence (CDS)

ATGGCAATCTCAGTTTCGAGAAGGCTGCTGCGCTCTGTGGGGTCCTTATCAACGTTTGGACAATGTAATTCTTCATGTACTATGAGTCGGTCATTTTCTAATCCCCATGAAATTTATGGCCATGTTAGTGGGAGTAGCTCTACGTTTGCAAGCCGTTCTACTCTTTTGAAGGCTGGATCCTTTCTTGCTTCCCGAGGGTTTTGCACCTCAATTTTGACTCCTGAATCAAGCAATAATGCATTTCCTTCTGAGTTACTGTCTGCTAAGCCGGTGGCATCCGAAGAGCGCAAGATAGGGCTTTATCAGGACCTGATGATTCCTGTGACAAACTTTGAAAATGAAGACAAAGGCTTCATGGTCTTGGCTGGAGATGTTTTTGACCTTCCAATCAGGAAGGACATCATTCATCGGGTTGTTAGATGGCAGCTTGCAAAGAGACAGCAGGGAACACATTCGACAAAAACAATTAGTGAGGTTAGCGGAACAGGGAGAAAGCCATGGAAACAAAAAGGTACTGGGAGAGCAAGACATGGAACATTGCGTGGTCCCCAGTTCAGAGGTGGTGCAACTATGCATGGACCCAAACCACGAAGTCATGCCTTTAAGCTTAATAAGAAAGTTCGTCGCTTGGGTTTGATGATTGCTCTTTCAGCTCGTGTTGCAGAAGGAAAGCTTCTGGTATTTGATAATTTGGACGTCACTACGCATAAGACGAAGAATATGGTGAAATATGTCAGTAAAATGGAGAATACCAAAAAAGTATTACTAGTTGATGGTGGTCCCATAGATGAGAAGCTGAAGTTGGCCACGCAAAACCTTCATTATGTCAACGTTTTGCCATCTATTGGTTTGAATGTTTACAGCATTCTTCTACACGATACTCTTGTGATGTCTCGTGATGCTGTAGAAAGAATTGTTACCCGGATGCACACTCCAATCAACCGCTGA

Protein sequence

MAISVSRRLLRSVGSLSTFGQCNSSCTMSRSFSNPHEIYGHVSGSSSTFASRSTLLKAGSFLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFMVLAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
Homology
[Close]
BLAST of Cucsat.G2416 vs. ExPASy Swiss-Prot
Match: A5V601 (50S ribosomal protein L4 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) OX=392499 GN=rplD PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.1e-23
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 0 

Query: 2   HGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMENT 61
           HGP+ R     LNKKVR LGL +ALS++  +GKL+V D L++   KTK ++  + K+   
Sbjct: 89  HGPRARVFESSLNKKVRALGLKMALSSKAKDGKLVVVDTLELKDAKTKALIAKIGKLGFG 148

Query: 62  KKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 121
              L++DG  +D   +LA+ N+H +NVLP+IG NVY IL H+TLV++R AVE++  R +
Sbjct: 149 ATALVIDGEAVDNGFQLASSNIHTINVLPAIGANVYDILKHETLVLTRAAVEKLEARFN 207

[Close]
BLAST of Cucsat.G2416 vs. ExPASy Swiss-Prot
Match: A1B028 (50S ribosomal protein L4 OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=rplD PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.7e-22
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 0 

Query: 3   GPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMENTK 62
           GP PRSHAF L KKVR LGL  ALSA+ A G+L+V D+L++   KT  + K V K    K
Sbjct: 90  GPTPRSHAFDLPKKVRALGLKHALSAKAAAGELVVVDSLNIAEAKTAAVAKAV-KENGWK 149

Query: 63  KVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRM 120
           +VL++DG  ++E    A +NL  V+VLPS+G NVY IL  DTLV++R  VE +  R+
Sbjct: 150 RVLVIDGAEVNENFARAARNLEGVDVLPSMGANVYDILRRDTLVLTRAGVEALEARL 205

[Close]
BLAST of Cucsat.G2416 vs. ExPASy Swiss-Prot
Match: A8GVB5 (50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplD PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-21
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           +HGP  RSHA KL KKVR+LGL+ ALS + +EGKLLV D+L + T KT N+V  ++K + 
Sbjct: 89  IHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLLVIDSLKLETPKTSNLVNILNKFQG 148

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRM 120
            K   ++DG  +D    LA QN++   V+P IG NVY I+ H+ +++S++AV  +  R+
Sbjct: 149 -KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANVYDIIRHEYVLLSQEAVNVLEERL 206

[Close]
BLAST of Cucsat.G2416 vs. ExPASy Swiss-Prot
Match: Q1RHM2 (50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rplD PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-21
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           +HGP  RSHA KL KKVR+LGL+ ALS + +EGKLLV D+L + T KT N+V  ++K + 
Sbjct: 89  IHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLLVIDSLKLETPKTSNLVNILNKFQG 148

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRM 120
            K   ++DG  +D    LA QN++   V+P IG NVY I+ H+ +++S++AV  +  R+
Sbjct: 149 -KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIGANVYDIIRHEYVLLSQEAVNVLEERL 206

[Close]
BLAST of Cucsat.G2416 vs. ExPASy Swiss-Prot
Match: Q2G8X9 (50S ribosomal protein L4 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplD PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-21
Identity = 59/119 (49.58%), Postives = 80/119 (67.23%), Query Frame = 0 

Query: 2   HGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMENT 61
           HGP+ R     LNKKVR LGL +ALS++   G L+V DNLDV   KTK +V  ++K    
Sbjct: 90  HGPRVREFNISLNKKVRALGLKMALSSKAKAG-LVVVDNLDVDA-KTKALVGQLAKANWG 149

Query: 62  KKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 121
           KKVL++DG  +++    A +N+  VNVLP+IG NVY IL HDTLV++R AVE++  R +
Sbjct: 150 KKVLVIDGEGVNDNFAKAARNIVGVNVLPAIGANVYDILKHDTLVLTRAAVEKLEARFN 206

[Close]
BLAST of Cucsat.G2416 vs. NCBI nr
Match: XP_004134779.1 (uncharacterized protein LOC101223158 [Cucumis sativus] >XP_031742399.1 uncharacterized protein LOC101223158 [Cucumis sativus] >KGN49080.1 hypothetical protein Csa_004134 [Cucumis sativus])

HSP 1 Score: 244 bits (622), Expect = 1.85e-78
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN
Sbjct: 191 MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 250

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
Sbjct: 251 TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 310

Query: 121 TPINR 125
           TPINR
Sbjct: 311 TPINR 315

[Close]
BLAST of Cucsat.G2416 vs. NCBI nr
Match: TYK13021.1 (50S ribosomal protein L4 [Cucumis melo var. makuwa])

HSP 1 Score: 237 bits (604), Expect = 7.97e-76
Identity = 121/125 (96.80%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKN+VKYV+ MEN
Sbjct: 184 MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNIVKYVNTMEN 243

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
Sbjct: 244 TKKVLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 303

Query: 121 TPINR 125
           TPINR
Sbjct: 304 TPINR 308

[Close]
BLAST of Cucsat.G2416 vs. NCBI nr
Match: XP_008440040.1 (PREDICTED: 50S ribosomal protein L4 [Cucumis melo])

HSP 1 Score: 237 bits (604), Expect = 1.60e-75
Identity = 121/125 (96.80%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKN+VKYV+ MEN
Sbjct: 207 MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNIVKYVNTMEN 266

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
Sbjct: 267 TKKVLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 326

Query: 121 TPINR 125
           TPINR
Sbjct: 327 TPINR 331

[Close]
BLAST of Cucsat.G2416 vs. NCBI nr
Match: XP_038881662.1 (50S ribosomal protein L4 [Benincasa hispida] >XP_038881663.1 50S ribosomal protein L4 [Benincasa hispida])

HSP 1 Score: 229 bits (585), Expect = 7.46e-73
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGL IALSAR AEGKLL+FDNLDVTTHKTKN+VKYV+ MEN
Sbjct: 191 MHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLIFDNLDVTTHKTKNIVKYVNGMEN 250

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKK+LLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVY ILLHDTLVMSRDAVERIVTRMH
Sbjct: 251 TKKLLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYDILLHDTLVMSRDAVERIVTRMH 310

Query: 121 TPINR 125
           TPI+R
Sbjct: 311 TPISR 315

[Close]
BLAST of Cucsat.G2416 vs. NCBI nr
Match: XP_022950857.1 (uncharacterized protein LOC111453831 [Cucurbita moschata] >XP_022950858.1 uncharacterized protein LOC111453831 [Cucurbita moschata] >XP_022950859.1 uncharacterized protein LOC111453831 [Cucurbita moschata] >KAG6603796.1 hypothetical protein SDJN03_04405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229 bits (583), Expect = 1.14e-72
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGL IAL+AR AEGKLL+FDNLDV THKTK MV YV++MEN
Sbjct: 182 MHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGKLLIFDNLDVATHKTKYMVNYVNEMEN 241

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
Sbjct: 242 TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 301

Query: 121 TPINR 125
           TPINR
Sbjct: 302 TPINR 306

[Close]
BLAST of Cucsat.G2416 vs. ExPASy TrEMBL
Match: A0A0A0KH99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513440 PE=3 SV=1)

HSP 1 Score: 244 bits (622), Expect = 8.94e-79
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN
Sbjct: 191 MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 250

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
Sbjct: 251 TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 310

Query: 121 TPINR 125
           TPINR
Sbjct: 311 TPINR 315

[Close]
BLAST of Cucsat.G2416 vs. ExPASy TrEMBL
Match: A0A5D3CMH6 (50S ribosomal protein L4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006220 PE=3 SV=1)

HSP 1 Score: 237 bits (604), Expect = 3.86e-76
Identity = 121/125 (96.80%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKN+VKYV+ MEN
Sbjct: 184 MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNIVKYVNTMEN 243

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
Sbjct: 244 TKKVLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 303

Query: 121 TPINR 125
           TPINR
Sbjct: 304 TPINR 308

[Close]
BLAST of Cucsat.G2416 vs. ExPASy TrEMBL
Match: A0A1S3B0T2 (50S ribosomal protein L4 OS=Cucumis melo OX=3656 GN=LOC103484636 PE=3 SV=1)

HSP 1 Score: 237 bits (604), Expect = 7.75e-76
Identity = 121/125 (96.80%), Postives = 124/125 (99.20%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKN+VKYV+ MEN
Sbjct: 207 MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNIVKYVNTMEN 266

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
Sbjct: 267 TKKVLLVDGGPINEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 326

Query: 121 TPINR 125
           TPINR
Sbjct: 327 TPINR 331

[Close]
BLAST of Cucsat.G2416 vs. ExPASy TrEMBL
Match: A0A6J1GH25 (uncharacterized protein LOC111453831 OS=Cucurbita moschata OX=3662 GN=LOC111453831 PE=3 SV=1)

HSP 1 Score: 229 bits (583), Expect = 5.53e-73
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGL IAL+AR AEGKLL+FDNLDV THKTK MV YV++MEN
Sbjct: 182 MHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGKLLIFDNLDVATHKTKYMVNYVNEMEN 241

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
Sbjct: 242 TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 301

Query: 121 TPINR 125
           TPINR
Sbjct: 302 TPINR 306

[Close]
BLAST of Cucsat.G2416 vs. ExPASy TrEMBL
Match: A0A6J1IUG2 (uncharacterized protein LOC111478684 OS=Cucurbita maxima OX=3661 GN=LOC111478684 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 6.35e-72
Identity = 114/125 (91.20%), Postives = 120/125 (96.00%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHAFKLNKKVRRLGL IAL+AR AEGKLL+FDNLDV THKTK +V YV++MEN
Sbjct: 182 MHGPKPRSHAFKLNKKVRRLGLKIALTARAAEGKLLIFDNLDVATHKTKYIVNYVNEMEN 241

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVE+IVTRMH
Sbjct: 242 TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVEKIVTRMH 301

Query: 121 TPINR 125
           TPINR
Sbjct: 302 TPINR 306

[Close]
BLAST of Cucsat.G2416 vs. TAIR 10
Match: AT2G20060.1 (Ribosomal protein L4/L1 family )

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-54
Identity = 102/125 (81.60%), Postives = 116/125 (92.80%), Query Frame = 0 

Query: 1   MHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKNMVKYVSKMEN 60
           MHGPKPRSHA K+NK+VRRLGL IAL+AR AEGKLLVFD+L + THKTKN+V Y ++MEN
Sbjct: 176 MHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNIVNYYNQMEN 235

Query: 61  TKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH 120
           TKKVL+V+GGPIDEKLKLATQNLHYVN++PSIGLNVYSILLHDTL+MSRDAV +IV RMH
Sbjct: 236 TKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLNVYSILLHDTLLMSRDAVNKIVERMH 295

Query: 121 TPINR 126
           TPINR
Sbjct: 296 TPINR 300

[Close]
BLAST of Cucsat.G2416 vs. TAIR 10
Match: AT1G07320.1 (ribosomal protein L4 )

HSP 1 Score: 44.7 bits (104), Expect = 6.5e-05
Identity = 35/123 (28.46%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 3   GPKPRSHAFKLNKKVRRLGLMIAL-SARVAEGKLLVFDNLDVTTHKTKN------MVKYV 62
           GP+P+  + K+N+K ++L +  AL SA  AEG  +V +       K K       M ++ 
Sbjct: 141 GPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWG 200

Query: 63  SKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERI 119
              +     L++D   +DE +  +++N+  + +L    LN++ IL  D LV++  AVE +
Sbjct: 201 LDPKEKAMFLMID---VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFL 260

[Close]
BLAST of Cucsat.G2416 vs. TAIR 10
Match: AT1G07320.2 (ribosomal protein L4 )

HSP 1 Score: 44.7 bits (104), Expect = 6.5e-05
Identity = 35/123 (28.46%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 3   GPKPRSHAFKLNKKVRRLGLMIAL-SARVAEGKLLVFDNLDVTTHKTKN------MVKYV 62
           GP+P+  + K+N+K ++L +  AL SA  AEG  +V +       K K       M ++ 
Sbjct: 141 GPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWG 200

Query: 63  SKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERI 119
              +     L++D   +DE +  +++N+  + +L    LN++ IL  D LV++  AVE +
Sbjct: 201 LDPKEKAMFLMID---VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFL 260

[Close]
BLAST of Cucsat.G2416 vs. TAIR 10
Match: AT1G07320.3 (ribosomal protein L4 )

HSP 1 Score: 44.7 bits (104), Expect = 6.5e-05
Identity = 35/123 (28.46%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 3   GPKPRSHAFKLNKKVRRLGLMIAL-SARVAEGKLLVFDNLDVTTHKTKN------MVKYV 62
           GP+P+  + K+N+K ++L +  AL SA  AEG  +V +       K K       M ++ 
Sbjct: 141 GPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWG 200

Query: 63  SKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERI 119
              +     L++D   +DE +  +++N+  + +L    LN++ IL  D LV++  AVE +
Sbjct: 201 LDPKEKAMFLMID---VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFL 260

[Close]
BLAST of Cucsat.G2416 vs. TAIR 10
Match: AT1G07320.4 (ribosomal protein L4 )

HSP 1 Score: 44.7 bits (104), Expect = 6.5e-05
Identity = 35/123 (28.46%), Postives = 63/123 (51.22%), Query Frame = 0 

Query: 3   GPKPRSHAFKLNKKVRRLGLMIAL-SARVAEGKLLVFDNLDVTTHKTKN------MVKYV 62
           GP+P+  + K+N+K ++L +  AL SA  AEG  +V +       K K       M ++ 
Sbjct: 141 GPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWG 200

Query: 63  SKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERI 119
              +     L++D   +DE +  +++N+  + +L    LN++ IL  D LV++  AVE +
Sbjct: 201 LDPKEKAMFLMID---VDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFL 260

The following BLAST results are available for this feature:
BLAST of Cucsat.G2416 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A5V6015.1e-2345.3850S ribosomal protein L4 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM ... [more]
A1B0289.7e-2250.4350S ribosomal protein L4 OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 ... [more]
A8GVB51.7e-2145.3850S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=r... [more]
Q1RHM21.7e-2145.3850S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rpl... [more]
Q2G8X94.8e-2149.5850S ribosomal protein L4 OS=Novosphingobium aromaticivorans (strain ATCC 700278 ... [more]
BLAST of Cucsat.G2416 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134779.11.85e-78100.00uncharacterized protein LOC101223158 [Cucumis sativus] >XP_031742399.1 uncharact... [more]
TYK13021.17.97e-7696.8050S ribosomal protein L4 [Cucumis melo var. makuwa][more]
XP_008440040.11.60e-7596.80PREDICTED: 50S ribosomal protein L4 [Cucumis melo][more]
XP_038881662.17.46e-7392.8050S ribosomal protein L4 [Benincasa hispida] >XP_038881663.1 50S ribosomal prote... [more]
XP_022950857.11.14e-7292.80uncharacterized protein LOC111453831 [Cucurbita moschata] >XP_022950858.1 unchar... [more]
BLAST of Cucsat.G2416 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH998.94e-79100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G513440 PE=3 SV=1[more]
A0A5D3CMH63.86e-7696.8050S ribosomal protein L4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3B0T27.75e-7696.8050S ribosomal protein L4 OS=Cucumis melo OX=3656 GN=LOC103484636 PE=3 SV=1[more]
A0A6J1GH255.53e-7392.80uncharacterized protein LOC111453831 OS=Cucurbita moschata OX=3662 GN=LOC1114538... [more]
A0A6J1IUG26.35e-7291.20uncharacterized protein LOC111478684 OS=Cucurbita maxima OX=3661 GN=LOC111478684... [more]
BLAST of Cucsat.G2416 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20060.12.6e-5481.60Ribosomal protein L4/L1 family [more]
AT1G07320.16.5e-0528.46ribosomal protein L4 [more]
AT1G07320.26.5e-0528.46ribosomal protein L4 [more]
AT1G07320.36.5e-0528.46ribosomal protein L4 [more]
AT1G07320.46.5e-0528.46ribosomal protein L4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR01300550S ribosomal protein uL4TIGRFAMTIGR03953TIGR03953coord: 121..305
e-value: 1.2E-70
score: 234.6
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 44..314
IPR01300550S ribosomal protein uL4HAMAPMF_01328_BRibosomal_L4_Bcoord: 111..310
score: 31.810806
IPR023574Ribosomal protein L4 domain superfamilyGENE3D3.40.1370.10coord: 89..315
e-value: 5.2E-79
score: 266.6
IPR023574Ribosomal protein L4 domain superfamilySUPERFAMILY52166Ribosomal protein L4coord: 106..308
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 121..306
e-value: 2.3E-67
score: 226.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..198

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G2416.T1Cucsat.G2416.T1mRNA
Cucsat.G2416.T2Cucsat.G2416.T2mRNA
Cucsat.G2416.T3Cucsat.G2416.T3mRNA
Cucsat.G2416.T5Cucsat.G2416.T5mRNA
Cucsat.G2416.T4Cucsat.G2416.T4mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome