Cucsat.G21029 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G21029
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RNA-binding protein pno1-like
Location	ctg910: 476773 .. 478947 (-)
RNA-Seq Expression	Cucsat.G21029
Synteny	Cucsat.G21029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATATTTTCGAAAAAAAACCCGGAAATCTAAAGGATTAAAATATTATTTATTGATGTTACCAAATTACTATTTTACCATAGCAGGTTGGCCAATACTCGTCGAAGATTTAGGACAAAATCGTAATTTGCAAAATAAAAATAGAAAATGAAATCACAATCAGAGTTTGCCCTAATTTATGACTTTGATTTCATTCTTCTCCTTCCTCTTCTCTTTGAGATTCAATCCTTCACTTCACCTTCTCGGCTCTGATTCATACTACCTCCACTGCTCCGCCAGCTACTCTCTGCGACTAAATTTTCCGTCCTCACTGAGCGGTGGCTCTCCCATTCAAGCTTTAGCCGATACCTTACTGTGACGCTCCCGTTCTTCTCTCAACTTCTCATCCGCCCTCGTCTCTCACCGTCGCAGGTTTCTACCTCTCGTATTCTTGGGGTTATATAATTTGTTTGGTTTTCGATTCATACTGGGGATTGTTGGTTTTGGGTTCATGATTTCTGCAAGTTTTCTTTTTCTGGGGTGCTATGTTTTTCATTTGATAATCGTTGATTGCTTGACTGGAGTATTGTTGTTATCGTCTGCATTCCAGTTTGATTTGGTATGAAGGCGAATTCATGCCTTATTGGCTGAAAAGTAACGCGGGTAGACTTTTGTTTTTCCTCTTAAATTTGATCCTTTTCAATTTTTTGCTGTACTCTGTTTCTGTGACTTTCTTCCTGTTGATTTGTGACGTGTAGTTTGTTTTTGCTGAATAATTTGTCTCGAATTTCTGCGCTTTTGAAAGGATTTCTGGTGGATTGGGTAATTAGAAGAGCTAGCTTTTGAAGGGTTCTTTTTTTTAAAGTCTTTTTTCAAATCGCAATTGAGTATTGTTTCTTGGGAGGAATACTATTCACCTCATCCTTTCTGCAAGTTGATGTTTTGGGGCGTTCCATTTTCATTTTACAATACATTTTGGTAGACTTCTATATTCTGAGGTTATACGTGTGTGTACTACCTTATTATGAGACCTTTAAAAGGTCAAGGTATAATCTTCTCACTGGGGATTTTATTATAATTTTACTTCGTTTGCTTTTTCCTTTTTTTTTTTTTTTTTCTAGGAGGGTGGGGGTGGAGATTTATGCCTTCTATTGTGCTGCCTTTCGTGTTGATGGCTTTCTAATCCATCTAATCTTTCACTCGGATATTGCTCACATATTGTTGTCTAATGGGAGCTATTTGGTTGTTTGCAGGGTGGAACTCAGCAAAATTTCATAATGCAGTCTACTGAAGTTCCCGTTTCCATGGAAGTGGAAACAGTTTCAAGCAAAACAGTAACTGAAATTGGGACCTTGCCGCCAAAACCGCAGTTTGATCCTCTAAAGCCTCATGAGATGAACGATGGCCGAGTTCAGTTCCGAAAGGTATCTGTTCCTCCACATCGATATTCTCCTCTCAAGAAAGCATGGATGGAAATCTACACCCCAATATATGATCAGATGAAAATTGACATCCGTATGAACCTCAAGGCTCGTAAAGTTGAACTGAAAACAAGAGCAGACACACCCGACGTTAGTAACTTGCAAAAGTGTGCAGATTTTGTTCATGCTTTCATGCTTGGTTTTGATGTAATCGATGCCATTGCACTCTTACGAGTGGATGAGCTCTATGTAGAATCTTTTGAGATCAAAGATGTTAAGACGCTTCGAGGTGAGCACTTGTCCCGTGCCATTGGCAGATTGTCTGGTAAAGCTGGTAAAACAAAGTTTGCCATTGAAAACGCTACAAAGACAAGGATAGTTATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATAAAAATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCTCCGGCTGGAAAAGTTTATTCAAAACTTAGAGCAGTTACAGCCAGATTGGCAGAAAGGTTTTGATCTTTTATGATTTTTGCATACCTAGTTATTTGAGGAATAGTGTAACTTTATTTAAATGCTTATGCATTAAAGTTTTGTCCTAGATACCAATTATTAATCAATACACATCGTCACTAAATGAGTATAAGGTGATTGGTATTTAGATTGGTGTGCTGATTGAAGTTACTTGATATCTGTTCTGTTTAAAGCCGGTTAAATAGTGTGTTTATCATTTTGCTTCAATTTATTAGCTTTGCTCAATATCA

Coding sequence (CDS)

ATGCAGTCTACTGAAGTTCCCGTTTCCATGGAAGTGGAAACAGTTTCAAGCAAAACAGTAACTGAAATTGGGACCTTGCCGCCAAAACCGCAGTTTGATCCTCTAAAGCCTCATGAGATGAACGATGGCCGAGTTCAGTTCCGAAAGGTATCTGTTCCTCCACATCGATATTCTCCTCTCAAGAAAGCATGGATGGAAATCTACACCCCAATATATGATCAGATGAAAATTGACATCCGTATGAACCTCAAGGCTCGTAAAGTTGAACTGAAAACAAGAGCAGACACACCCGACGTTAGTAACTTGCAAAAGTGTGCAGATTTTGTTCATGCTTTCATGCTTGGTTTTGATGTAATCGATGCCATTGCACTCTTACGAGTGGATGAGCTCTATGTAGAATCTTTTGAGATCAAAGATGTTAAGACGCTTCGAGGTGAGCACTTGTCCCGTGCCATTGGCAGATTGTCTGGTAAAGCTGGTAAAACAAAGTTTGCCATTGAAAACGCTACAAAGACAAGGATAGTTATTGCAGACACCAAGATTCACATATTAGGATCCTTTGCCAACATAAAAATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCTCCGGCTGGAAAAGTTTATTCAAAACTTAGAGCAGTTACAGCCAGATTGGCAGAAAGGTTTTGA

Protein sequence

MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF

Homology

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BLAST of Cucsat.G21029 vs. ExPASy Swiss-Prot
Match: Q9VR89 (RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.7e-66
Identity = 121/187 (64.71%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 37  PHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADT 96
           P +    R + RKVSVPPHRYS LK+ WM+I+TP+ + MK+ IR N+KAR+VEL+   +T
Sbjct: 53  PPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPET 112

Query: 97  PDVSNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLS 156
           PD++NLQ+ ADFV AF+ GF+V DA+ALLR+++L+VESFEIKDVKTLRG+H SRAIGRL+
Sbjct: 113 PDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLA 172

Query: 157 GKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAV 216
           GK G+TKF IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LRAV
Sbjct: 173 GKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAV 232

Query: 217 TARLAER 224
            +RL+ER
Sbjct: 233 ASRLSER 239

[Close]

BLAST of Cucsat.G21029 vs. ExPASy Swiss-Prot
Match: A7RP64 (RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.4e-65
Identity = 121/214 (56.54%), Postives = 164/214 (76.64%), Query Frame = 0


Query: 11  EVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTP 70
           E++TV S+          +P F P+K  ++  G+ + RK+ VP HRY+PLK+ WM+I+TP
Sbjct: 34  EMDTVESRA---------RPSFPPVKAQKLAGGKSETRKIPVPSHRYTPLKENWMKIFTP 93

Query: 71  IYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVIDAIALLRVDEL 130
           + + +K+ IR NL +R VE++   +T D+  +QK ADFV AF+LGF+V DA+AL+R+D+L
Sbjct: 94  VVEHLKLQIRFNLGSRHVEIRASKETSDIGAVQKAADFVQAFILGFEVEDALALIRLDDL 153

Query: 131 YVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANI 190
           ++ESFEI DVK L+G+HLSRAIGR++GK GKTKF IEN TKTRIV+A+TKIHILGSF NI
Sbjct: 154 FLESFEIADVKPLKGDHLSRAIGRVAGKGGKTKFTIENVTKTRIVLAETKIHILGSFQNI 213

Query: 191 KIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           KIAR ++C+LILGSP  KVY  +RAV +R AERF
Sbjct: 214 KIARTAICNLILGSPPSKVYGNMRAVASRSAERF 238

[Close]

BLAST of Cucsat.G21029 vs. ExPASy Swiss-Prot
Match: Q29IG6 (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.4e-65
Identity = 118/178 (66.29%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 46  QFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKC 105
           + RKVSVPPHRYS LK+ WM+I+TP+ + MK+ IR N+KAR+VEL+   +TPD++NLQK 
Sbjct: 60  ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQKG 119

Query: 106 ADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFA 165
           ADFV AF+ GF+V DA+ALLR+++L+VE+FEIKDVKTLRG+H SRAIGRL+GK G+TKF 
Sbjct: 120 ADFVKAFLCGFEVDDALALLRLEDLFVETFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFT 179

Query: 166 IENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAER 224
           IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LR+V +RL+ER
Sbjct: 180 IENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGSPPSKVYGNLRSVASRLSER 237

[Close]

BLAST of Cucsat.G21029 vs. ExPASy Swiss-Prot
Match: Q5F414 (RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.4e-63
Identity = 121/210 (57.62%), Postives = 162/210 (77.14%), Query Frame = 0


Query: 16  SSKTVTEIGTLPPK-PQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQ 75
           ++++    G  P K P F PL    +  G+ + RKV VP +RY+PLK+ WM+I+TPI + 
Sbjct: 33  AAESAEAAGPQPSKRPAFPPLPAAALGVGKGEVRKVPVPANRYTPLKENWMKIFTPIVEH 92

Query: 76  MKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVIDAIALLRVDELYVES 135
           +++ IR NLK R VE+KT ++T D+S L K ADFV AF+LGF V DA+AL+R+D+L++ES
Sbjct: 93  LQLQIRFNLKTRNVEIKTCSETKDLSALTKAADFVKAFILGFQVEDALALIRLDDLFLES 152

Query: 136 FEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIAR 195
           FE+ DVK L+G+HLSRAIGR++GK GKTKF IEN T+TRIV+AD+KIHILGSF NIK+AR
Sbjct: 153 FEVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADSKIHILGSFQNIKMAR 212

Query: 196 DSLCSLILGSPAGKVYSKLRAVTARLAERF 225
            ++C+LILGSP  KVY  +RAV +R AERF
Sbjct: 213 TAICNLILGSPPSKVYGNIRAVASRAAERF 242

[Close]

BLAST of Cucsat.G21029 vs. ExPASy Swiss-Prot
Match: Q8AVH4 (RNA-binding protein PNO1 OS=Xenopus laevis OX=8355 GN=pno1 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.4e-63
Identity = 117/204 (57.35%), Postives = 159/204 (77.94%), Query Frame = 0


Query: 22  EIGTLPPK-PQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIR 81
           ++G  P K P F P+   ++   + + RK+ VP HRY+PLK+ WM+I+TPI + +++ +R
Sbjct: 33  DMGEQPSKRPDFPPISGDKLMGDKDEMRKIPVPSHRYTPLKENWMKIFTPIVEHLQLQVR 92

Query: 82  MNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDV 141
            NLK+R VE+KT  +T DV  L K ADFV AF+LGF V DA+AL+R+D+L++ESFE+ DV
Sbjct: 93  FNLKSRNVEIKTCKETTDVGALTKAADFVRAFILGFQVEDALALVRLDDLFLESFEVTDV 152

Query: 142 KTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSL 201
           K L+G+HLSRAIGR++GK GKTKF IEN TKTRIV+AD+KIHI+GSF NIK+AR ++C+L
Sbjct: 153 KPLKGDHLSRAIGRIAGKGGKTKFTIENVTKTRIVLADSKIHIMGSFQNIKMARTAICNL 212

Query: 202 ILGSPAGKVYSKLRAVTARLAERF 225
           ILGSP  KVY  +RAV +R A+RF
Sbjct: 213 ILGSPPSKVYGNIRAVASRAADRF 236

[Close]

BLAST of Cucsat.G21029 vs. NCBI nr
Match: XP_004145908.1 (RNA-binding protein pno1 [Cucumis sativus] >KGN49911.1 hypothetical protein Csa_000276 [Cucumis sativus])

HSP 1 Score: 438 bits (1126), Expect = 9.30e-155
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Cucsat.G21029 vs. NCBI nr
Match: XP_008437547.1 (PREDICTED: RNA-binding protein pno1-like [Cucumis melo] >XP_016903508.1 PREDICTED: RNA-binding protein pno1-like [Cucumis melo])

HSP 1 Score: 433 bits (1114), Expect = 6.28e-153
Identity = 219/224 (97.77%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVETVSSKTVTE+GT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRA+TPD+SNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Cucsat.G21029 vs. NCBI nr
Match: KAA0042585.1 (RNA-binding protein pno1-like [Cucumis melo var. makuwa] >TYK05988.1 RNA-binding protein pno1-like [Cucumis melo var. makuwa])

HSP 1 Score: 433 bits (1114), Expect = 1.12e-152
Identity = 219/224 (97.77%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVETVSSKTVTE+GT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 17  MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 76

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRA+TPD+SNLQKCADFVHAFMLGFDVID
Sbjct: 77  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 136

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 137 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 196

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 197 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 240

[Close]

BLAST of Cucsat.G21029 vs. NCBI nr
Match: XP_038874451.1 (RNA-binding protein pno1-like [Benincasa hispida])

HSP 1 Score: 431 bits (1109), Expect = 3.63e-152
Identity = 217/224 (96.88%), Postives = 222/224 (99.11%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE VSSKT TE+GTLPPKP+FDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVSSKTATEVGTLPPKPKFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKID+RMNLKARKVELKTRADTPD+SNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Cucsat.G21029 vs. NCBI nr
Match: XP_022157181.1 (RNA-binding protein pno1-like [Momordica charantia])

HSP 1 Score: 423 bits (1087), Expect = 8.21e-149
Identity = 211/224 (94.20%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTE P SMEVE +S+K +TE+GTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEAPTSMEVEAMSTKPITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTP+Y+QMKIDIRMNLKARKVELKTR DTPD+SNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPVYEQMKIDIRMNLKARKVELKTREDTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Cucsat.G21029 vs. ExPASy TrEMBL
Match: A0A0A0KQC5 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139880 PE=3 SV=1)

HSP 1 Score: 438 bits (1126), Expect = 4.50e-155
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Cucsat.G21029 vs. ExPASy TrEMBL
Match: A0A1S3AUA6 (RNA-binding protein pno1-like OS=Cucumis melo OX=3656 GN=LOC103482927 PE=3 SV=1)

HSP 1 Score: 433 bits (1114), Expect = 3.04e-153
Identity = 219/224 (97.77%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVETVSSKTVTE+GT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRA+TPD+SNLQKCADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Cucsat.G21029 vs. ExPASy TrEMBL
Match: A0A5D3C450 (RNA-binding protein pno1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00840 PE=3 SV=1)

HSP 1 Score: 433 bits (1114), Expect = 5.42e-153
Identity = 219/224 (97.77%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPVSMEVETVSSKTVTE+GT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 17  MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 76

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRA+TPD+SNLQKCADFVHAFMLGFDVID
Sbjct: 77  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 136

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 137 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 196

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 197 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 240

[Close]

BLAST of Cucsat.G21029 vs. ExPASy TrEMBL
Match: A0A6J1DX80 (RNA-binding protein pno1-like OS=Momordica charantia OX=3673 GN=LOC111023957 PE=3 SV=1)

HSP 1 Score: 423 bits (1087), Expect = 3.97e-149
Identity = 211/224 (94.20%), Postives = 219/224 (97.77%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTE P SMEVE +S+K +TE+GTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEAPTSMEVEAMSTKPITEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTP+Y+QMKIDIRMNLKARKVELKTR DTPD+SNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPVYEQMKIDIRMNLKARKVELKTREDTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of Cucsat.G21029 vs. ExPASy TrEMBL
Match: A0A6J1K1S8 (RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111490946 PE=3 SV=1)

HSP 1 Score: 422 bits (1086), Expect = 5.65e-149
Identity = 212/224 (94.64%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE V SK++TE+G LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSITEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPD+SNLQKCADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

The following BLAST results are available for this feature:

BLAST of Cucsat.G21029 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VR89	6.7e-66	64.71	RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV...	[more]
A7RP64	4.4e-65	56.54	RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1	[more]
Q29IG6	7.4e-65	66.29	RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l...	[more]
Q5F414	1.4e-63	57.62	RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1	[more]
Q8AVH4	1.4e-63	57.35	RNA-binding protein PNO1 OS=Xenopus laevis OX=8355 GN=pno1 PE=2 SV=1	[more]

BLAST of Cucsat.G21029 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145908.1	9.30e-155	100.00	RNA-binding protein pno1 [Cucumis sativus] >KGN49911.1 hypothetical protein Csa_...	[more]
XP_008437547.1	6.28e-153	97.77	PREDICTED: RNA-binding protein pno1-like [Cucumis melo] >XP_016903508.1 PREDICTE...	[more]
KAA0042585.1	1.12e-152	97.77	RNA-binding protein pno1-like [Cucumis melo var. makuwa] >TYK05988.1 RNA-binding...	[more]
XP_038874451.1	3.63e-152	96.88	RNA-binding protein pno1-like [Benincasa hispida]	[more]
XP_022157181.1	8.21e-149	94.20	RNA-binding protein pno1-like [Momordica charantia]	[more]

BLAST of Cucsat.G21029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQC5	4.50e-155	100.00	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139880 PE=3 SV=...	[more]
A0A1S3AUA6	3.04e-153	97.77	RNA-binding protein pno1-like OS=Cucumis melo OX=3656 GN=LOC103482927 PE=3 SV=1	[more]
A0A5D3C450	5.42e-153	97.77	RNA-binding protein pno1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1DX80	3.97e-149	94.20	RNA-binding protein pno1-like OS=Momordica charantia OX=3673 GN=LOC111023957 PE=...	[more]
A0A6J1K1S8	5.65e-149	94.64	RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111490946 PE=3 S...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 129..202 e-value: 1.7E-4 score: 31.0
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 128..224 e-value: 1.1E-22 score: 81.9
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 129..223
IPR039912	Pre-rRNA-processing protein PNO1-like	PANTHER	PTHR12826:SF13	RNA-BINDING PROTEIN PNO1	coord: 9..224
None	No IPR available	PANTHER	PTHR12826	RIBONUCLEASE Y	coord: 9..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G21029.T1	Cucsat.G21029.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding